Abstract
One-carbon (C1 unit) metabolism is essential to all eukaryotes and prokaryotes. In plants and fungi it supplies the C1 units required for the synthesis of amino acids, proteins, nucleic acids (purines), some vitamins, and methylated compounds such as lignin, alkaloids or betaines (Fig. 1).
Thus it is involved in such different physiological aspects such as regulation and differentiation via DNA and vitamin metabolism, cell wall formation and extension (lignin and pectin), osmoregulation (betaines), secondary plant metabolism (alkaloids), amino acid metabolism, internal and external detoxification (cyanides) or utilization of N- and C-containing solutes abundant in the external environment. Additionally it plays an important role in photorespiration of photosynthetic C3 plants.
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References
Aggelis G, Fakas S, Melissis S, Clonis YD (1999) Growth of Candida boidiniii in a methanol-limited continuous culture and the formation of methanol-degrading enzymes. J Biotechnol 72:127–139
Aggelis G, Margariti N, Kralli, C, Flouri F (2000) Growth of Candida boidinii on methanol and the activity of methanol-degrading enzymes as affected from formaldehyde and methylformate. J Biotechnol 80:119–125
Allen SJ, Holbrook JJ (1995) Isolation, sequence and overexpression of the gene encoding NAD-dependent formate dehydrogenase from the methylotrophic yeast Candida methylica. Gene 162:99–104
Appling DA (1991) Compartmentation of folate-mediated one-carbon metabolism in eu-karyotes. FASEB J 5:2645–2651
Appling DR, Kastanos E, Pasternack LB, Woldmann YY (1997) The use of 13C nuclear magnetic resonance to evaluate metabolic flux through folate one-carbon pools in Saccharomyces cerevisiae. Methods Enzymol 281:218–231
Atkins CA, Smith PMC, Storer PJ (1997) Reexamination of the intracellular localization of de novo purine synthesis in cowpea nodules. Plant Physiol 113:127–135
Atkinson IT, Nargang FE, Cossins EA (1995) Folylglutamate synthesis in Neurospora crassa: transformation of polyglutamate-deficient mutants. Phytochemistry 38:603–608
Atkinson IJ, Nargang FE, Cossins EA (1998) Folylpolyglutamate synthesis in Neurospora crassa: primary structure of the folylpolyglutamate synthetase gene and elucidation of the MET-6 mutation. Phytochemistry 49:2221–2232
Baerends RJS, Sulter GJ, Jeffries TW, Cregg JM, Veenhuis M (2002) Molecular characterization of the Hansenula polymorpha FLD1 gene encoding formaldehyde dehydrogenase. Yeasts 19:37–42
Barclay M, Hart A, Knowles CJ, Meeussen JCL, Tett VA (1998a) Biodegradation of metal cyanides by mixed and pure cultures of fungi. Enzyme Microbial Technol 22:223–231
Barclay M, Tett VA, Knowles CJ (1998b) Metabolism and enzymology of cyanide/ metallo-cyanide biodegradation by Fusarium solani under neutral and acidic conditions. Enzyme Microbial Technol 23:321–330
Barlowe CK, Appling DR (1990a) Isolation and characterization of a novel eukaryotic monofunctional DAD-dependent 5,10 mefhylenetetrahydrofolate dehydrogenase. Biochemistry 29:7089–7094
Barlowe CK, Appling DR (1990b) Molecular genetic analysis of Saccharomyces cerevisiae C-1-tetrahydrofolate synthase mutants reveals a noncatalytic function of the ADE3 gene product and an additional folate-dependent enzyme. Mol Cell Biol 10:5679–5687
Besson V, Rébeillé F, Neuburger M, Douce R, Cossins EA (1993) Effect of tetrahydrofolate polyglutamates on the kinetic parameters of serine hydroxymethyltransferase and glycine decarboxylase from pea mitochondria. Biochem J 292:425–430
Bird D, Bradshaw R (1997) Gene targeting is locus dependent in the filamentous fungus Aspergillus nidulans. Mol Gen Genet 255:219–225
Bird IF, Cornelius MJ, Keys AJ, Whittingham CP (1972) Oxidation and phosphorylation associated with the conversion of glycine to serine. Phytochemistry 11:1587–1594
Bourguignon J, Vauclare P, Merand V, Forest E, Neuburger M, Douce R (1993) Glycine decarboxylase complex from higher plants. Mol cloning, tissue distribution and mass spectrometry analysis of the T-protein. Eur J Biochem 217:377–386
Bourguignon J, Rébeillé F, Douce R (1999) Serine and glycine metabolism in higher plants. In: Singh BK (ed) Plant amino acids. Marcel Dekker, New York, pp 111–146
Brown DT, Turner PD, O’Reilly C (1995) Expression of the cyanide hydratase enzyme from Fusarium lateritium in Escherichia coli and identification of an essential cysteine residue. FEMS Microbiol Lett 134:143–146
Carandang JS, Gimmler H, Hahn T, Greiser A (2001) Characterization of an acid tolerant filamentous fungus (Deuteromycetes) coexisting with the extreme acid-resistant green alga Dunaliella acidophila at pH 1.0. Acta Manilana 49:5–23
Cella R, Parisi B (1993) Dihydrofolate reductase and thymilidate synthase in plants: an open problem. Physiol Plant 88:509–521
Chan PY, Dale PL, Cossins EA (1991) Purification and properties of Neurospora folylpoly-glutamate synthatase. Phytochemistry 30:3525–3532
Chapin FS, Moilanen L, Kielland K (1993) Preferential use of organic nitrogen for growth by a non-mycorrhizal arctic sedge. Nature 361:150–153
Chen JL, Kunz DA (1997) Cyanide utilization of Pseudomonas fluroescens NCIMB 11674 involves a putative siderophore. FEMS Microbiol Lett 156:61–67
Chen L, Chan SY, Cossins EA (1997) Distribution of folate derivates and enzymes for synthesis of 10-formyltetrahydrofolate in cytosolic and mitochondrial fractions of pea leaves. Plant Physiol 115:299–301
Cherest H, Thomas D, Surdin KY (2000) Polyglutamylation of folate enzymes is necessary for methionine biosynthesis and maintanance of intact mitochondrial genome in Sac-charomyces cerevisiae. J Biol Chem 275:14056–14063
Chistoserdova L, Gomelsky L, Vorholt JA, Gomelsky M, Tsygankov YD, Lidstrom ME (2000) Analysis of two formaldehyde oxidation pathways in Methlyobacillus flagellatus KT, a ribulose monophosphate cycle methylotroph. Microbiology 146:233–238
Chow CM, Rajbhandary UL (1993) Developmental regulation of the gene for formate dehydrogenase in Neurospora crassa. J Bacteriol 175:3703–3709
Cluness MJ, Turner PD, Clements E, Brown DT, O’Reilly C (1993) Purification and properties of cyanide hydratase from Fusarium lateritium and analysis of the corresponding chyl gene. J Gen Microbiol 139:1807–1815
Coulter C, Hamilton JTG, McRoberts WC, Kulakov L, Larkin MJ, Harper DB (1999) Ha-lomethane:bisulfide/halide ion mefhyltransferase, an unusual corrinoid enzyme of environmental significance isolated from an aerobic methylotroph using chloromethane as the sole carbon source. Appl Environ Microbiol 65:4301–43112
Cossins EA (1987) Folate biochemistry and the metabolism of one-carbon units. In: Conn EE, Stumpf PK (eds) The biochemistry of plants, vol 11. Academic Press, New York, pp 317–353
Cossins EA, Chen L (1997) Folates and one-carbon metabolism in plants and fungi. Phytochemistry 45:437–452
Cowan D, Cramp R, Pereira R, Graham D, Almatawah Q (1998) Biochemistry and biotechnology of mesophilic and thermophilic nitrile metabolizing enzyme. Extremophiles 2:207–216
DeSouza L, Shen Y, Bognar AL (2000) Disruption of cytoplasmic and mitochondrial folylpolyglutamate synthetase activity in Saccharomyces cerevisiae. Arch Biochem Bio-phys 376:299–312
Douce R, Neuburger M (1996) Biochemical dissection of photorespiration. Curr Opin Plant Biol 2:214–222
Douce R, Bourguignon J, Neuburger M, Rébeillé F (2001) The glycine decarboxylase system; a fascinating complex. Trends Plant Sci 6:167–176
Dumestre A, Bousserhin N, Berthelin J (1997a) Biodegradation of free cyanide by the fungi Fusarium solani: relation to pH and cyanide speciation in solution. Compt Rend Acad Sci Ser II A 325:133–138
Dumestre A, Chone T, Portal JM, Gerard M, Berthelin J (1997b) Cyanide degradation under alkaline conditions by a strain of Fusarium solani isolated from contaminated soils. Appl Environ Microbiol 63:2729–2734
Erikson KE, Nishida A (1988) Methanol oxidase of Phanerochaete chrysosporium. Methods in Enzymol 161:322–326
Falkengren-Grerup U, Mansson KF, Olsson MO (2000) Uptake capacity of amino acids by ten grasses and forbs in relation to soil acidity and nitrogen availability. Environ Exp Bot 44:207–219
Fall R, Benson AA (1996) Leaf methanol-the simplest natural product from plants. Trends Plant Sci 1:296–301
Ferry JG (1990) Formate dehydrogenase. FEMS-Microbiol Rev 87:377–382
Fetzner S (1998) Bacterial dehalogenation. Appl Microbiol Biotechnol 50:633–657
Fischer WN, André B, Rentsch D, Krolkiewicz S, Tegeder M, Breitkreuz K, Frommer WB (1998) Amino acid transport in plants. Trends Plant Sci 3:188–195
Fry WE, Evans PH (1977) Association of formamide hydrolyase with fungal pathogenicity to cyanogenic plants. Phytopathology 67:1001–1006
Gardeström P, Bergman A, Ericson L (1981) Inhibition of the conversion of glycine to serine in spinach leaf mitochondria. Physiol Plant 53:439–444
Gardeström P, Edwards GE, Henricson D, Ericson I. (1985) The localization of serine hydromethyltransferase in leaves of C3 and C4 species. Physiol Plant 64:29–33
Gimmler H (2000) GABA and the acid resistance of the filamentous fungus Bispora sp. Manila J Sci 3:1–8
Gimmler H (2001) Mutualistic relationships between algae and fungi (excluding lichens). Prog Bot 62:194–214
Gimmler H, De Jesus J, Greiser A (2001) Heavy metal resistance of the extreme acidotolerant filamentous fungus Bispora sp. Microbial Ecol 42:87–98
Gimmler H, Boots A, De Jesus J (2002) xAcetamide as potential C-and N-source of the extremely acid and heavy metal resistant filamentous fungus Bispora sp. Manila J Sci 3:1–8
Grabarse W, Vaupel M, Vorholt JA, Shima S, Thauer RK (1999) The crystal structure of methenyltetrahydromethanopterin cyclohydrolase from the hyperthermophilic ar-chaeon Methanopyrus kandleri. Struct Lond 7:1257–1268
Grey M, Schmidt M, Brendel M (1996) Overexpression of ADH1 confers hyper-resistance to formaldehyde in Saccharomyces cerevisiae. Curr Genet 29: 437–440
Griffin DH (1994) Fungal physiology, 2nd edn. Wiley and Liss Publisher, New York, p 81
Hanson AD, Shachar-Hill Y (2002) Assigning gene function in the Arabidopsis one (C1) metabolism network. Plant Physiol 129:409–410
Hanson AD, Gage DA, Shachar-Hill Y (2000) Plant one-carbon metabolism and its engineering. Trends Plant Sci 5:206–213
Hartung W, Ratcliffe RG (2002) Utilization of glycine and serine as nitrogene sources in the roots of Zea mays and Chamaegigas intrepidus. J Exp Bot 53:1–10
Heilmeier H, Hartung W (2001) Survival strategies under extreme and complex environmental conditions: the aquatic resurrection plant Chamaegigas intrepidus. Flora 196:245–260
Henry HAL, Jefferies RL (2002) Free amino acid, ammonium and nitrate concentrations in soil solutions of a grazed coastal marsh in relation to plant growth. Plant Cell Environ 25:665–676
Hourton-Cabasssa C, Ambard-Bretteville F, Moreau F, Davy de Virville J, Remy R, Colas des Francs-Small C (1998) Stress induction of mitochondrial formate dehydrogenase in potato leaves. Plant Physiol 116:627–635
Igambierdiev AU, Bykova NV, Kleczkowski LA (1999) Origins and metabolism of formate in higher plants. Plant Physiol Biochem 37:503–513
Illeova V, Certik M, Stefuca V, Bales V (1993) Formate dehydrogenases in methanol-utilizing yeasts. Microbios 76:29–33
Ishikawa M, Kuroyama H, Takeuchi Y, Tsumuraya Y (2000) Characterization of pectin methyl transferase from soybean hypocotyls. Plants 210:782–791
Jansen M, Hansen TA (2000) DMSP tetrahyrofolate methyltransferase from the marine sulfate-reducing bacterium strain WN. J Sea Res 43:225–231
Jansen M, Hansen TA (2001) Non-growth-associated demethylation of dimefhylsulfonio-proprionate by (homo)acetegenic bacteria. Appl Eviron Microbiol 67:300–306
Kastanos EK, Woldman YY, Appling DR (1997) Role of mitochondrial and cytoplasmic serine hydroxymethyltransferase isoenzymes in de novo synthesis in Saccharomyces cerevisiae. Biochemistry 36:14956–14964
Kato N (1990a) Formaldehyde dehydrogenase from mefhylotrophic yeasts. Methods Enzy-mol 188:455–459
Kato N (1990b).Formate dehydrogenase. Methods in Enzymol 188:459–462
Kayser MF, Ucurum Z, Vuilleumier S (2002) Dichromomefhane metabolism and C1 utilization in Methylobacteriutn strains. Microbiology 148:1915–1922
Kielland K (1994) Amino acid absorption by arctic plants: implications for plant nutrition and nitrogen cycling. Ecology 75:2373–2383
Kirksey TJ, Appling DR (1996) Site-directed mutagenesis of a highly conserved aspartate in the putative 10-formyltetrahydrofolate binding site of yeast C1-tetrahydrofolate synthase. Arch Biochem Biophys 333:251–259
Kobayashi M, Shimizu S (1998) Metalloenzyme nitrile hydratase: structure, regulation and application to biotechnology. Nat Biotechnol 16:733–736
Kruschwitz H, Schirch V (1994) Evidence that 5-formyltetrahydrofolate is a storage form of folate and one-carbon groups in Neurospora crassa. FASEB J 8:21–25
Kruschwitz HL, McDonald D, Cossins EA, Schirch V (1994) 5-Formyltetrahydroptero-poly-glutamates are the major folate derivates in Neurospora conidiospores. J Biol Chem 269:28757–28763
Kunz DA, Nagappan O, Silva-Avalos J, Delong GT (1992) Utilization of cyanide as a nitrogenous substrate by Pseudomonas fluorescens NCIMB 11764 evidence for multiple pathways of metabolic conversion. Appl Environ Microbiol 58:2022–2029
Kunz DA, Wang CS, Chen JL (1994) Alternative routes of enzymic cyanide metabolism in Pseudomonas fluorescens NCIMB 11764. Microbiology 140:1705–1712
Labrou NE (2000) Improved purification of Candida boidinii formate dehydrogenase. Bioseparation 9:99–104
Labrou NE, Clonis YD (1995) The interaction of Candida boidinii formate dehydrogenase with a new family of chimeric biomimetic dye-ligands. Arch Biochem Biophys 316:169–178
Labrou NE, Karagouni A, Clonis YD (1995) Biomimetic-dye affinity adsorbents for enzyme purification: application to the one-step purification of Candida boidinii formate dehydrogenase. Biotech Bioeng 48:278–288
Labrou NE, Ridgen DJ (2001) Active site characterization of Candida boidinii formate dehydrogenase. Biochem J 354:455–463
Leak DJ (1992) Biotechnological and applied aspects of methane and methanol utilizers. In: Murrell JC, Dalton H (eds) Biotechnology handbooks, vol 5. Plenum Press, New York, pp 245–279
Lee B, Yurimoto H, Sakai Y, Kato N (2002) Physiological rol of the glutathione-dependent formaldehyde dehydrogenase in the methylotrophic yeast Candida boidinii. Microbiology 148:2697–2704
Linardi VR, Dias JCT, Rosa CA (1996) Utilization of acetonitrile and other aliphatic nitriles by a Candida famata strain. Microbiol Lett 144:67–71
Lipson DA, Monson RK (1998) Plant-microbe competition for soil amino acids in the alpine tundra: effects of freeze-thaw and dry-rewet events. Oecologia 113:406–414
Lovell CA, Przybyla A, Ljungdahl LG (1990) Primary structure of the thermostable for-myltetrahydrofolate synthetase from Clostridium thermoaceticum. Biochemistry 29:5687–5694
Maaheimo H, Fiaux J, Cakar ZP, Bailey JE, Sauer U, Szyperski T (2001) Central carbon metabolism of Saccharomyces cerevisiae explored by biosynthetic fractional 13C labeling of common amino acids. Eur J Biochem 268:2464–2479
Maden BEH (2000) Tetrahydrofolate and tetrahydromethanopterin compared: functionally distinct carriers in C1 metabolism. Biochem J 350:609–629
Maier-Greiner UH, Obermaier-Skrobanek BMM, Estermaier LM, Kammerloher W, Freund C, Wülfling C, Burkert UI, Matern DH, Breuer M (1991) Isolation and properties of a nitrile hydratase from the soil fungus Myrothecium verrucaria that is highly specific for the fertilizer cyanamide and cloning of its gene. Proc Natl Acad Sci USA 88:4260–4264
Martinez FE, Benizez T (1994) The SAM2 gene product catalyzes the formation of S-adeno-syl-ethionine from ethionine in Saccharomyces cerevisiae. Curr Microbiol 28:339–343
Mautino MR, Goyon C, Rosa AL (1996) Cloning and sequence of the Ascobulus immersus S-adenosyl-L-methionine synthease encoding. Gene 170:155–156
McAnulla C, Woodall CA, McDonald IR, Studer A, Vuilleumier S, Leisinger T, Murrel JC (2001) Chloromethan utilization gene cluster from Hyphomicrobium chloromethanicum strain CM2T and development of functional gene probes to detect halomefhane-degrad-ing bacteria. Appl Environ Microbiol 67:307–316
McClung CR, Davis CR, Page KM, Denome SA (1992) Characterization of the formate FOR locus which encodes the cytosolic serine hydroxymethyltransferase of Neurospora crassa. Mol Cell Biol 12:1412–1421
McDonald D, Atkinson IJ, Cossins EA, Shane B (1995) Isolation of dihydrofolate and folylpolyglutamate synthetase activities from Neurospora. Phytochemistry 38:327–333
McNeil, JB, Mcintosh EM, Taylor BV, Zhang FR, Tang S, Bognar AL (1994) Cloning and molecular characterization of three genes, including two genes encoding serine hy-droxymefhyl transferases, whose inactivation is required to render yeast auxotrophic for glycine. J Biol Chem 269:9155–9165
McNeil JB, Bognar AL, Pearlman RE (1996) In vivo analysis of folate coenzymes and their compartmentation in Saccharomyces cerevisiae. Genetics 142:371–381
McNeil JB, Zhang FR,Taylor BV, Sinclair D, Pearlman RE, Bognar AL (1997) Cloning, and molecular characterization of the GCV1 gene encoding the glycine cleavage T-protein from Saccharomyces cerevisiae. Gene 186:13–20
Meinhild AK, Klaerke DA, Zeuthen T (1998) Bidirectional water fluxes and specificity for small molecules in aquaporine 0-5. J Biol Chem 273:32446–32451
Mezentsev AV, Ustiniikova TB, Tikonova TV, Popov VO (1997) Isolation and kinectic mechnisms of NAD-dependent format dehydrogenase from the methylotrophic yeast Hansenula polymorpha. Prokladnaya Biokhim Mikrobiol 32:589–595
Miller JM, Conn EE (1980) Metabolism of hydrogen cyanide in higher plants. Plant Physiol 65:1199–1202
Miller JM, Gray DO (1982) The utilization of nitriles and amides by a Rhodococcus species. J Gen Microbiol 128:1803–1810
Miller LG, Kalin RM, McCauley SE, Hamilton JTG, Harper DB, Millet DB, Oremland RS, Goldstein AH (2001) Large carbon isotope fractionation associated with oxidation of methyl halides by methylotrophic bacteria. Proc Nat Acad Sci USA 98:5833–5837
Mira GJ, Garcia MP, Mira GAJ (1995) Identification of yeast by hydrolysis of amides. Mycoses 38:101–106
Mouillon JM, Aubert S, Bourguignon J, Gout E, Douce R, Rébeillé F (1999) Glycine and serine catabolism in non-photosynthetic higher plant cells: Their role in C1 metabolism. Plant J 20:197–205
Müller RH, Babel W (1991) Formaldehyde as a carbon and energy source in yeast growth. Zentralblatt Mikrobiol 146:25–33
Nadolska-Lutyk J, Balinska M, Paszewski A (1989) Interrelated regulation of sulfur-containing amino acid biosynthesis enzymes and folate metabolizing enzymes in Aspergillus nidulans. Eur J Biochem 181:231–236
Nagarajan L, Storms RK (1997) Molecular characterization of GCV3, the Saccharomyces cerevisiae gene coding for the glycine cleavage system hydrogen carrier protein. J Biol Chem 272:4444–4450
Narayanasamyk K, Shukla, S, Parekh LJ (1990) Utilizaton of acrylonitrile by bacteria isolated from petrochemical waste waters. Indian J Exp Biol 28:968–971
Näsholm T, Persson J (2001) Plant acquisition of organic nitrogen in boreal forests. Physiol Plant 111:419–426
Näsholm T, Ekblad A, Nordi, A, Giesler R, Högberg M, Högberg P (1998) Boreal forest plants take up organic nitrogen. Nature 392:914–916
Näsholm T, Huss-Danell K, Högberg P (2000) Uptake of organic nitrogen in the field by four agriculturally important plant species. Ecology 81:1155–1161
Näsholm T, Huss-Danell K, Högberg P (2001) Uptake of glycine by field-grown wheat. New Phytol 150:59–63
Naula N, Walther C, Baumann D, Schweingruber ME (2002) Two non-complementing genes encoding enzymatically active methylenetetrahydrofolate reductases control methionine requirement in fission yeast Schizosaccharomyces pombe. Yeast 19:881–848
Nauter GCC, Figueira MM, Linardi VR (1998) Degradation of cyano-metal complexes and nitriles by an Escherichia coli strain. Rev Microbiol 29:12–16
Nemecek-Marshall M, McDonald RC, Franzen JJ, Wojciechwski Cl, Fall R (1995) Methanol emission from leaves. Enzymatic detection of gas-phase methanol and relation of methanol fluxes to stomatal conductance and leaf development. Plant Physiol 108:1359–1368
Neuburger M, Rébeillé F, Jourdain A, Nakamura S, Douce R (1996) Mitochondria are a major site for folate and thymilidate synthesis in plants. J Biol Chem 271:9466–9472
Neuhauser W, Steininger M, Haltrich D, Kulbe HD, Nidetzky B (1998) Rapid preparation in high yield of pure formate dehydrogenase from Pichia angusta. Biotechnol Techniques 12:565–568
Nikiforov MA, Chandriani S, O’Connel B, Petrenko O, Kotenko J, Beavis A, Sedivy JM, Cole MD (2002) A functional screen for Myc-responsive genes reveals serine hydroxymefhyl-transferase, a major source of the one-carbone unit for cell metabolism. Mol Cell Biol 22:5793–5800
Nishida A, Erikson KE (1987) Formation, purification and partial characterization of methanol oxidase, a hydrogen peroxide producing enzyme in Phanerochaete chryso-sporium. Biotechnol Appl Biochem 9:325–328
Overkamp KM, Koetter P, van der Hoek R, Schoondermark SS, Luttik MAH, van Dijken JP Pronk JT (2002) Functional analysis of structural genes for NAD+-dependent formate dehydrogeanse in Saccharomyces cerevisiae. Yeast 19:509–520
Padmaja G, Balagopal C (1985) Cyanide degradation by Rhizopus oryzae. Can J Microbiol 31:663–669
Palenik B, Henson SE (1997) The use of amides and other nitrogen sources by the phyto-plankton Emiliana huxleyi. Limnol Oceanogr 42:1544–1551
Parker MS, Armbrust EV (2000) Idendification of a glycine decarboxylase gene in Thalliosira weissflogii: a probe for photorespiration in diatoms. J Phycol 36 (Suppl):53–54
Parpinello G, Berardi E, Strabbioli R (1998) A regulatory mutant of Hansenula polymorpha exhibiting methanol utilization metabolism and peroxisome proliferation in glucose. J Bacteriol 180:2958–2967
Pasternack LB, Laude DA Jr, Appling DR (1992) Carbon-13 NMR detection of folate-medi-ated serine and glycine synthesis in vivo in Saccharomyces cerevisiae. Biochemistry 31: 8713–8719
Pasternack LB, Laude DA Jr, Appling DR (1994a) 13C NMR analysis of intercompartmental flow of one-carbon units into choline and purines in Saccharomyces cerevisiae. Biochemistry 33:74–82
Pasternack LB, Laude DA Jr, Appling DR (1994b) Whole-cell detection by 13C NMR of metabolic flux through the C1-tetrahydrofolate synthase/serine hydroxymethyl transferase enzyme system and effect of antifolate exposure in Saccharomyces cerevisiae. Biochemistry 33:7166–7173
Pasternack LB, Littlepage LE, Laude DA Jr, Appling DR (1996) 13C-NMR analysis of the use of alternative donors to the tetrahydrofolate-dependent one-carbon pools in Sac-charomyces cerevisiae. Arch Biochem Biophys 326:158–165
Pennincksx M (2000) A short review on the role of glutathione in the response of yeasts to nutritional, environmental and oxidative stresses. Enzyme Microbial Technol 26:737–742
Pereira PT, Monteiro de Carvalho M, Arrabaca JD, Amaral CMT, Roseiro JC (1997) Alternative respiratory system and formamide hydrolyase activity as the key components of the cyanide-resistance mechanism in Fusarium oxysporum. Can J Microbiol 43:929–936
Pichinoty F (1988) Utilization of acetamide by Bacillus gordonae I. Isolation and characteristics of mutants able to use this compound as a source of carbon and energy. C R Seances Soc Biol Fil 182:177–180
Pomper BK, Vorholt JA, Chistoserdova L, Lidstrom ME, Thauer RK (1999) A methenyl tetrahydromethanopterin cyclohydrolase and a methenyl tetrahydrofolate cyclohydro-lase in Methylobacterium extorquens AM1. Eur J Biochem 261:475–480
Raab TK, Lipson DA, Monson RK (1999) Soil amino acid utilization among species of the Cyperaceae: plant and soil processes. Ecology 80:2408–2419
Ramirez F, Monroy O, Favela E, Guyot JP, Cruz F (1998) Acetamide degradation by a continuous-fed batch culture of Bacillus sphaericus. Appl Biochem Biotechnol 70-72:215–223
Ratcliffe RG, Shachar-Hill Y (2001) Probing plant metabolism with NMR. Ann Rev Plant Physiol Plant Mol Biol 52:499–526
Ravanel S, Cherest H, Jabrin S, Grunwald D, Surdin KY, Douce R, Rebeille F (2001) Tetrahydrofolate biosynthesis in plants: molecular and functional characterization of dihydrofolate synthestase and three isoformes of folylpolyglutamate synthetase in Arabi-dopsis thaliana. Proc Natl Acad Sci USA 98:15360–15365
Rebéillé F, Douce R (1999) Folate synthesis and compartmentation in higher plants. In: Kruger NJ (ed) Regulation of primary metabolic pathways in plants. Kluwer Academic Press, Amsterdam, pp 53–99
Rezende RP, Dias JCT, Rosa CA, Carazza F, Linardi VR. (1999) Utilization of nitriles by yeasts isolated from a Brazilian gold mine. J Gen Appl Microbiol 45:185–192
Rhodes D, Gage DA, Cooper AJL, Hanson AD (1997) S-Methylmethionine conversion to di-methylsulfonioproprionate: evidence for an unusual transamination reaction. Plant Physiol 115:1541–1548
Rhodes D, Verslues PE, Sharp RE (1999) In: Singh BJ (ed) Plant amino acids. Marcel Dekker, New York, pp 319–356
Rissler JF, Millar RL (1977) Contribution of a cyanide insensitive alternate respiratory system to increases in formamide hydrolyase activity and to growth in Stemphylium loti in vitro. Plant Physiol 60:857–861
Rosario FM, Biosca JA, Norin A, Jornvall H, Pares X (1995) Class III alcohol dehydrogenase from Saccharomyces cerevisiae: structural and enzymatic features differ toward the human/mammalian forms in a manner consistent with functional needs in formaldehyde detoxification. FEBS Lett 370:23–26
Rover JC, Christianos LM, Yoder WT, Gembetaa GA, Klotz AV, Morris CL, Brody H, Otani S (1999) Deletion of the trichodiene synthase gene of Fusarium venenatum: two systems for repeated gene deletions. Fungal Genet Biol 28:68–78
Sakai Y, Murdanoto AP, Konishi T, Iwamatsu A (1997) Regulation of the formate dehydrogenase gene, FDH1, in the methyltrophic yeast Candida bidinii and growth characeter-sitics of an FHD1-disrupted strain on methanol, methylamine and choline. J Bacteriol 179:4480–4485
Sakamoto M, Masuda T, Yanagimoto Y, Nakano Y, Kitaoka S (1991) Purification and characterization of cytosolic serine hydroxymethyltransferase from Euglena gracilis Z. Agr Biol Chem 55: 2243–2250
Sarojini G, Oliver DJ (1985) Inhibition of glycine oxidation by carboxymethoxylamine, methoxylamine and acethydrazide. Plant Physiol 77:786–789
Saxena D, Aouad S, Attieh J, Sain HS (1998) Biochemical charaterization of chloromethane emission from the wood-rotting fungus Phellinus pomaceus. Appl Environ Michrobiol 64:2831–2835
Schmidt SGR (1999) Glycine metabolism by plant roots and its occurrence in Australian plant communities. Aust J Plant Physiol 26:253–264
Schmidt S, Stewart GR (1999) Waterlogging and fire impacts on nitrogen availability and utilization in a subtropical wet heathland (wallum). Plant Cell Environ 20:1231–1241
Serov AE, Popova AS, Fedorchuk VV, Tishov VI (2002) Engineering of coenzyme specificity of formate dehydrogenase from Saccharomyces cerevisiae. Biochem J 367:841–847
Shen S, Sulter G, Jeffries TW, Cregg JM (1998) A strong nitrogen source regulated promoter for controlled expression of foreign genes in the yeast Pichia pastoris. Gene 216:93–102
Shah MM, Grover TA, Aust SD (1991) Metabolism of cyanides by Phanerochaete chryso-sporium. Arch Biochem Biophys 290:173–178
Shanker R, Ramakrishna C, Seth PK (1990) Microbial degradation of acrylamide monomer. Arch Microbiol 154:192–198
Sigler LJW, Carmichael JW (1974) Acidophilic Scytalidium acidophilum new species. Can J Microbiol 20:267–268
Silva-Avalos J, Richmond MG, Nagappan O, Kunz DD (1990) Degradation of the metal cyano complex tetracyanonickelat II by cyanide utilizing bacterial isolates. Appl Environ Microbiol 56:3664–3670
Song JM, Rabinowitz JC (1993) Function of yeast cytoplasmic C-1-tetrahydrofolate synthase. Proc Natl Acad Sci USA 90:2636–2640
Streeter T, Bol R, Bardgett RD (2000) Amino acids as a nitrogen source in temperate upland grasslands: the use of dual labelled (13C, 15C) glycine to test for direct uptake by dominant grasses. Rapid Comm Mass Spectrom 14:1351–1355
Studer A, Vuilleumier S, Leisinger T (1999) Properties of the methylcobalamin:H4folatemethyltransferase involved in chloromethane utilization by Methylbacterium sp. strain. CM4. Eur J Biochem 264:242–249
Studer A, Stupperich E, Vuilleumier S, Leisinger T (2001) Chloromethane: tetrahydrofolate methyl transfer by two proteins from Methylobacterium chloromethanicum strain CM4. Eur J Biochem 268:2931–2938
Studer A, McAnulla C, Buchele R, Leisinger T, Vuilleumier S (2002) Chloromethane-induced genes define a third C1 utilization pathway in Methylbacterium chloromethnicum CM4. J Bacteriol 184:3476–3484
Suarez de Mata Z, Rabinowitz JC (1980) Formylmethionyl methylene tetrahhydrofolate synthetase combined from yeast Saccharomyces cerevisiae. Biochemical characterization of the protein from an ADE-3 mutant lacking the formyl tetrahydrofolate synthetase function. J Biol Chem 253:2569–2577
Summers PS, Nolte KD, Cooper AJL, Borgeas H, Leustek T, Rhodes D, Hanson AD (1998) Identification and stereospecifity of the first three enzymes of 3-dimethylsulfoniopro-prionate biosynthesis in a chlorophytic alga. Plant Physiol 116:369–378
Suzuki K, Itai R, Suzuki K, Nakanishi H, Nishikawa NK, Yoshimura E, Mori S (1998) Formate dehydrogenase, an enzyme of anaerobic metabolism, is induced by iron deficiency in barley roots. Plant Physiol 116:725–732
Thornton B (2001) Uptake of glycine by non-mycorrhizal Lolium perenne. J Exp Bot 52: 1315–1322
Todd RB, Murphy RL, Martin HM, Sharp JA, Davis MA, Katz ME, Hynes MJ (1997) The acetate regulatory gene facB of Aspergillus nidulants encodes a Zn(II)2Cys6 transcriptional activator. Mol Gen Genet 254:495–504
Tonon F, Priorde CC, Odier E (1990) Nitrogen and carbon regulation of lignin peroxidase and enzymes of nitrogen metabolism in Phanerochaete chrysosporium. Exp Mycol 14:243–254
Toyama H, Anthony C, Lidstrom ME (1998) Construction of insertion and deletion mxa-mutants of Methylobacterium extorquens AM1 by electroporation. FEMS Microbiol 166:1–7
Trapp S, Larsen M, Christiansen H (2001) Experimente zum Verbleib von Cyanid nach Aufnahme in Pflanzen. Umweltwiss Schadstoff Forschl 3:29–37
Triglia TL, Cowman AF (1994) Primary structure and expression of dihydropteroate synthase gene of Plasmodium falciparum. Proc Natl Acad USA 91:7149–7153
Trassat C, Nolte KD, Hanson AD (1996) Evidence that the pathway of dimethylsulfoniopro-prionate biosynthesis begins in the cytosol and ends in the chloroplast. Plant Physiol 111:985–973
Vallini V, Berardi E, Strabbioli R (2000) Mutations affecting the expr4ession of the MOX gene encoding peroxisomal methanol oxidase in Hansenula polymorpha. Curr Genet 38:163–170
Van den Berg M, Steensma HY (1997) Expression casettes for formaldehyde and fluoroacetate resistance, two dominant markers in Saccharomyces cerevisiae. Yeast 13:551–559
Van der Walt JP, Brewis EA, Prior B (1993) A note on the utilization of aliphatic nitriles by yeasts. Syst Appl Microbiol 16:330–332
Van Ophem PW, Duine JA (1994) NAD-and co-substrate (GSH or factor)-dependent formaldehyde dehydrogenase from methylotrophic microorganisms act as a class III alcohol dehydrogenase. FEMS Lett 116:87–93
Vannelli T, Studer A, Kertesz M, Leisinger T (1998) Chloromethane metabolism by Methylobacterium sp. strain CM4. Appl Environ Microbiol 64:1933–1936
Wahls WP, Song JM, Smith GR (1993) Single-standed DNA binding activity of C-1-tetrahy-drofolate synthase enzymes. J Biol Chem 268:23792–23798
Walton NJ, Woolhouse HW (1986) Enzymes of serine and glycine metabolism in leaves and non-photosynthetic tissues of Pisum sativum L. Planta 167:119–128
Wang P, Vanetten HD (1992) Cloning and properties of a cyanide hydratase gene form the phytopathogenic fungus Gloeocercospora sorghi. Biochem Biophys Res Comm 187:1048–1054
Wang P, Matthews DE, Vanetten HD (1992) Purification and characterization of cyanide hydratase form the phytopathogenic fungus Gloeocercospora sorghi. Arch Biochem Biophys 298:569–575
Watling R, Harper DB (1998) Chloromethane production by wood-rotting fungi and an estimate of the global flux to the atmosphere. Mycol Res 102:769–787
Wehner EP, Rao E, Brendel M (1993) Molecular structure and genetic regulation of SFA, a gene responsible for resistance to formaldehyde in Saccharomyces cerevisiae and characterization of its protein product. Mol Gen Genet 237:351–358
West MG, Barlowe CK, Appling DR (1993) Cloning and characterization of the Saccharomyces cerevisiae gene encoding NAD-dependent 5,10-methylenetetrahydrofolate dehydrogenase. J Biol Chem 268:153–160
West MG, Horne DW, Appling DR (1996) Metabolic role of cytoplasmic isoenzymes of 5.10-methylenetetrahydrofolate dehydrogenase in Saccharomyces cerevisiae. Biochemistry 35:3122–3132
Whatley FR, Greenaway W, Dunstan RH (1986) Glycine metabolism in carrot suspension culture cells investigated by gas chromatography/mass spectrometry. Physiol Vegetale 24:3–13
Whitlow M, Howard AJ, Stewart D, Hardmann KD, Kuyper LF (1997) X-ray cristallographic studies of Candida albicans dihydrofolate reductase: high resolution structures of the holoenzymes and an inhibited ternary complex. J Biol Chem 272:30289–30298
Whitlow M, Howard AJ, Stewart D, Hardmann KD, Chan JH, Baccanari DP, Tansik RL, Hong JS, Kuyper LF (2001) X-ray crystal structure of Candida albicans dihydrofolate reductase: high resolution ternary complexes in which the dihydronicotinamide moiety of NADPS is displaced by an inhibitor. J Med Chem 44:2928–2932
Wingler A, Lea PJ, Leegood RC (1999) Photorespiratory metabolism of glycolate and formate in glycine-accumulation mutants of barley and Amaranthus edulis. Planta 207:518–526
Wu S, Fallon RD, Payne MS (1999) Engineering Pichia pastoris for stereo selective nitrile hydrolysis by co-producing heterologous proteins. Appl Microbiol Biotechnol 52:186–190
Yanase H, Sakamoto A, Okomoto K, Kit K, Sato Y (2000) Degradation of the metal-cyano complex tetracyanonickelate (II) by Fusarium oxysporum N-10. Appl Microbiol Biotechnol 53:328–334
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Gimmler, H., Hartung, W. (2004). Nutritional Aspects of C1 Unit Metabolism in Heterotrophic Tissues and Organisms (Excluding Prokaryotes) Under Particular Respect to Dissolved Organic Nitrogen (DON) from the Environment. In: Esser, K., Lüttge, U., Beyschlag, W., Murata, J. (eds) Progress in Botany. Progress in Botany, vol 65. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-642-18819-0_11
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