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Applications of Image Registration in Human Genome Research

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Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 3117))

Abstract

Fluorescence microscopy has some limitations and imperfections that can affect some types of study in human genome research. Image registration methods can help overcome or reduce the effect of some of them. This paper is concentrated on several applications of image registration that are carried out in our laboratory. The concerned areas are: 1. chromatic aberration correction, which improves precision of colocalization studies, 2. registration of images after repeated acquisitions, which helps to enlarge the number of object types studied simultaneously, and 3. registration of tilted images in micro-axial tomography, which helps to improve optical resolution of light microscopy.

This research was funded by the Ministry of Education of the Czech Republic (Grant No. MSM-143300002) and by the Grant Agency of the Academy of Sciences of the Czech Republic (Grant No. A5004306).

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References

  1. Cremer, T., Kurz, A., Zirbel, R., Dietzel, S., Rinke, B., et al.: Role of chromosome territories in the functional compartmentalization of the cell nucleus. Cold Spring Harbor Symp. Quantitative Biology 58, 777–792 (1993)

    Google Scholar 

  2. Eils, R., Bertin, E., Saracoglu, K., Rinke, B., Schröck, E., Parazza, F., Usson, Y., Robert-Nicoud, M., Stelzer, E.H.K., Chassery, J.M., Cremer, T., Cremer, C.: Application of confocal laser microscopy and 3D Voronoi diagrams for volume and surface estimates of interphase chromosomes. J. Microsc. 177, 150–161 (1995)

    Google Scholar 

  3. Lukášová, E., Kozubek, S., Kozubek, M., Kroha, V., Marečková, A., Skalníková, M., Bártová, E., Slotová, J.: Chromosomes participating in translocations typical of malignant haemoblastosis are also involved in exchange aberrations induced by fast neutrons. Radiation Research 151, 375–384 (1999)

    Article  Google Scholar 

  4. Wählby, C., Erlandsson, F., Bengtsson, E., Zetterberg, A.: Sequential immunofluorescence staining and image analysis for detection of large numbers of antigens in individual cell nuclei. Cytometry 47, 32–41 (2002)

    Article  Google Scholar 

  5. Kozubek, M., Kozubek, S., Lukášová, E., Bártová, E., Skalníková, M., Matula, P., Matula, P., Jirsová, P., Cafourková, A., Koutná, I.: Combined confocal and widefield high-resolution cytometry of fluorescent in situ hybridization-stained cells. Cytometry 45, 1–12 (2001)

    Article  Google Scholar 

  6. Gustafsson, M.G.L.: Extended resolution fluorescence microscopy. Cur. Opin. Struct. Biol. 9, 627–634 (1999)

    Article  MathSciNet  Google Scholar 

  7. Kozubek, M., Matula, P.: An efficient algorithm for measurement and correction of chromatic aberrations in fluorescence microscopy. J. Microsc. 200, 206–217 (2000)

    Article  Google Scholar 

  8. Kozubek, M., Skalníková, M., Matula, P., Bártová, E., Rauch, J., Neuhaus, F., Eipel, H., Hausmann, M.: Automated micro axial tomography of cell nuclei after specific labelling by fluorescence in situ hybridization. Micron 33, 655–665 (2002)

    Article  Google Scholar 

  9. Matula, P., Kozubek, M., Steier, F., Hausmann, M.: Precise 3D image alignment in micro axial tomography. J. Microsc. 209 (2003)

    Google Scholar 

  10. Shaw, P.J., Agard, D.A., Hiraoka, Y., Sedat, J.W.: Tilted view reconstruction in optical microscopy: Three-dimensional reconstruction of drosophila melanogaster embryo nuclei. Biophysical Journal 55, 101–110 (1989)

    Article  Google Scholar 

  11. Cogswell, C.J., Larkin, K.G., Klemm, H.: Fluorescence microtomography: Multiangle image acquisition and 3D digital reconstruction. In: SPIE, vol. 2655, pp. 109–115 (1996)

    Google Scholar 

  12. Heintzmann, R., Cremer, C.: Axial tomographic confocal fluorescence microscopy. J. Microsc. 206, 7–23 (2002)

    Article  MathSciNet  Google Scholar 

  13. Horn, B.K.: Closed form solution of absolute orientation using unit quaternions. Journal of the Optical Society of America A 4, 629–642 (1987)

    Article  Google Scholar 

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© 2004 Springer-Verlag Berlin Heidelberg

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Matula, P., Kozubek, M., Matula, P. (2004). Applications of Image Registration in Human Genome Research. In: Sonka, M., Kakadiaris, I.A., Kybic, J. (eds) Computer Vision and Mathematical Methods in Medical and Biomedical Image Analysis. MMBIA CVAMIA 2004 2004. Lecture Notes in Computer Science, vol 3117. Springer, Berlin, Heidelberg. https://doi.org/10.1007/978-3-540-27816-0_32

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  • DOI: https://doi.org/10.1007/978-3-540-27816-0_32

  • Publisher Name: Springer, Berlin, Heidelberg

  • Print ISBN: 978-3-540-22675-8

  • Online ISBN: 978-3-540-27816-0

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