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Two-Stage Segmentation Framework with Parallel Decoders for the Kidney and Kidney Tumor Segmentation

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Kidney and Kidney Tumor Segmentation (KiTS 2023)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 14540))

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Abstract

Kidney cancer is one of the most common cancers worldwide. Automated segmentation of kidneys, tumors, and cysts from CT images is an important pathway to assist doctors in diagnosis. However, the diverse morphologies of tumors and cysts pose challenges regarding their difficult identification and unpredictable behavior. This paper proposes a two-stage segmentation method, proceeding from coarse to fine. In the first stage, we obtain the kidney region of interest (ROI) based on nnU-Net as input for the second stage. In the second stage, we design a parallel encoder structure. It employs a dual-stream end-to-end training approach, simultaneously monitoring and segmenting boundary information and targets. In particular, a residual channel attention mechanism was incorporated with the boundary prediction branch, highlighting the most relevant feature channels. The method has been experimentally demonstrated to be significantly superior to the baseline nnU-Net. On the official test set, our Kidney + Masses Dice and Tumor Dice are 0.936 and 0.670, respectively, ranking 14th on the leaderboard.

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References

  1. Chow, W.H., Dong, L.M., Devesa, S.S.: Epidemiology and risk factors for kidney cancer. Nat. Rev. Urol. 7(5), 245–257 (2010)

    Article  Google Scholar 

  2. Li, X., Liu, L., Heng, P.A.: H-Denseunet for kidney and tumor segmentation from CT scans (2019)

    Google Scholar 

  3. Yu, Q., Shi, Y., Sun, J., Gao, Y., Zhu, J., Dai, Y.: Crossbar-net: a novel convolutional neural network for kidney tumor segmentation in CT images. IEEE Trans. Image Process. 28(8), 4060–4074 (2019)

    Article  MathSciNet  Google Scholar 

  4. Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28

    Chapter  Google Scholar 

  5. Isensee, F., Jaeger, P.F., Kohl, S.A., Petersen, J., Maier-Hein, K.H.: nnu-net: a self-configuring method for deep learning-based biomedical image segmentation. Nat. Methods 18(2), 203–211 (2021)

    Article  Google Scholar 

  6. Zhao, Z., Chen, H., Wang, L.: A coarse-to-fine framework for the 2021 kidney and kidney tumor segmentation challenge. In: Heller, N., Isensee, F., Trofimova, D., Tejpaul, R., Papanikolopoulos, N., Weight, C. (eds.) KiTS 2021. LNCS, vol. 13168, pp. 53–58. Springer, Cham (2022). https://doi.org/10.1007/978-3-030-98385-7_8

    Chapter  Google Scholar 

  7. George, Y.: A coarse-to-fine 3D U-Net network for semantic segmentation of kidney CT scans. In: Heller, N., Isensee, F., Trofimova, D., Tejpaul, R., Papanikolopoulos, N., Weight, C. (eds.) KiTS 2021. LNCS, vol. 13168, pp. 137–142. Springer, Cham (2022). https://doi.org/10.1007/978-3-030-98385-7_18

    Chapter  Google Scholar 

  8. Zhao, Z., Chen, H., Li, J., Wang, L.: Boundary attention u-net for kidney and kidney tumor segmentation. In: 2022 44th Annual International Conference of the IEEE Engineering in Medicine & Biology Society (EMBC), pp. 1540–1543. IEEE (2022)

    Google Scholar 

  9. Fang, Y., Chen, C., Yuan, Y., Tong, K.: Selective feature aggregation network with area-boundary constraints for polyp segmentation. In: Shen, D., et al. (eds.) MICCAI 2019. LNCS, vol. 11764, pp. 302–310. Springer, Cham (2019). https://doi.org/10.1007/978-3-030-32239-7_34

    Chapter  Google Scholar 

  10. Murugesan, B., Sarveswaran, K., Shankaranarayana, S.M., Ram, K., Joseph, J., Sivaprakasam, M.: Psi-net: shape and boundary aware joint multi-task deep network for medical image segmentation. In: 2019 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), pp. 7223–7226. IEEE (2019)

    Google Scholar 

  11. Zhou, T., et al.: Cross-level feature aggregation network for polyp segmentation. Pattern Recogn. 140, 109555 (2023)

    Article  Google Scholar 

  12. Jin, Q., Meng, Z., Sun, C., Cui, H., Su, R.: Ra-UNet: A hybrid deep attention-aware network to extract liver and tumor in CT scans. Front. Bioeng. Biotechnol. 8, 605132 (2020)

    Article  Google Scholar 

  13. Oktay, O., et al.: Attention u-net: learning where to look for the pancreas. arXiv preprint arXiv:1804.03999 (2018)

  14. Li, C., et al.: Attention unet++: a nested attention-aware u-net for liver CT image segmentation. In: 2020 IEEE International Conference on Image Processing (ICIP), pp. 345–349. IEEE (2020)

    Google Scholar 

  15. Luu, H.M., Park, S.H.: Extending nn-UNet for brain tumor segmentation. In: Crimi, A., Bakas, S. (eds.) BrainLes 2021. LNCS, vol. 1263, pp. 173–186. Springer, Cham (2021). https://doi.org/10.1007/978-3-031-09002-8_16

    Chapter  Google Scholar 

  16. Gu, R., et al.: Ca-net: comprehensive attention convolutional neural networks for explainable medical image segmentation. IEEE Trans. Med. Imaging 40(2), 699–711 (2020)

    Article  Google Scholar 

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Acknowledgment

This work was supported in part by the National Natural Science Foundation of China (Grant No. 61976126). We want to express our gratitude to the organizers of KiTS2023 and the nnU-Net team for their assistance.

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Correspondence to Yanjun Peng .

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Li, Z., Peng, Y., Zhang, Z. (2024). Two-Stage Segmentation Framework with Parallel Decoders for the Kidney and Kidney Tumor Segmentation. In: Heller, N., et al. Kidney and Kidney Tumor Segmentation. KiTS 2023. Lecture Notes in Computer Science, vol 14540. Springer, Cham. https://doi.org/10.1007/978-3-031-54806-2_12

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  • DOI: https://doi.org/10.1007/978-3-031-54806-2_12

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  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-54805-5

  • Online ISBN: 978-3-031-54806-2

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