Abstract
Graph neural networks (GNNs) have been shown to be useful in a variety of graph classification tasks, from bioinformatics to social networks. However, most GNNs represent the graph using local neighbourhood aggregation. This mechanism is inherently difficult to learn about the global structure of a graph and does not have enough expressive power to distinguish simple non-isomorphic graphs. To overcome the limitation, here we propose multi-head heat kernel convolution for graph representation. Unlike the conventional approach of aggregating local information from neighbours using an adjacency matrix, the proposed method uses multiple heat kernels to learn the local information and the global structure simultaneously. The proposed algorithm outperforms the competing methods in most benchmark datasets or at least shows comparable performance.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Bacciu, D., Errica, F., Micheli, A., Podda, M.: A gentle introduction to deep learning for graphs. Neural Netw. 129, 203–221 (2020)
Chung, F.R., Graham, F.C.: Spectral graph theory. No. 92, American Mathematical Soc. (1997)
Dobson, P.D., Doig, A.J.: Distinguishing enzyme structures from non-enzymes without alignments. J. Mol. Biol. 330(4), 771–783 (2003)
Donnat, C., Zitnik, M., Hallac, D., Leskovec, J.: Learning structural node embeddings via diffusion wavelets. In: Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining, pp. 1320–1329 (2018)
Duvenaud, D., et al.: Convolutional networks on graphs for learning molecular fingerprints. arXiv preprint arXiv:1509.09292 (2015)
Fey, M., Lenssen, J.E.: Fast graph representation learning with PyTorch Geometric. In: ICLR Workshop on Representation Learning on Graphs and Manifolds (2019)
Garg, V., Jegelka, S., Jaakkola, T.: Generalization and representational limits of graph neural networks. In: International Conference on Machine Learning, pp. 3419–3430. PMLR (2020)
Gilmer, J., Schoenholz, S.S., Riley, P.F., Vinyals, O., Dahl, G.E.: Neural message passing for quantum chemistry. In: International Conference on Machine Learning, pp. 1263–1272. PMLR (2017)
Glorot, X., Bengio, Y.: Understanding the difficulty of training deep feedforward neural networks. In: Proceedings of the Thirteenth International Conference on Artificial Intelligence and Statistics, pp. 249–256. JMLR Workshop and Conference Proceedings (2010)
Grigor’Yan, A.: Heat kernels on manifolds, graphs and fractals. In: Casacuberta, C., Miro-Roig, R.M., Verdera, J., Xambo-Descamps, S. (eds.) European Congress of Mathematics. Progress in Mathematics, vol. 201, pp. 393–406. Birkhauser, Basel (2001). https://doi.org/10.1007/978-3-0348-8268-2_22
Hamilton, W.L., Ying, R., Leskovec, J.: Inductive representation learning on large graphs. arXiv preprint arXiv:1706.02216 (2017)
Kejani, M.T., Dornaika, F., Talebi, H.: Graph convolution networks with manifold regularization for semi-supervised learning. Neural Netw. 127, 160–167 (2020)
Kipf, T.N., Welling, M.: Semi-supervised classification with graph convolutional networks. arXiv preprint arXiv:1609.02907 (2016)
Kriege, N., Mutzel, P.: Subgraph matching kernels for attributed graphs. arXiv preprint arXiv:1206.6483 (2012)
Morris, C., et al.: Weisfeiler and leman go neural: higher-order graph neural networks. In: Proceedings of the AAAI Conference on Artificial Intelligence, vol. 33, pp. 4602–4609 (2019)
Nikolentzos, G., Dasoulas, G., Vazirgiannis, M.: k-hop graph neural networks. Neural Netw. 130, 195–205 (2020)
Wale, N., Watson, I.A., Karypis, G.: Comparison of descriptor spaces for chemical compound retrieval and classification. Knowl. Inf. Syst. 14(3), 347–375 (2008)
Wang, Y., Sun, Y., Liu, Z., Sarma, S.E., Bronstein, M.M., Solomon, J.M.: Dynamic graph CNN for learning on point clouds. ACM Trans. Graph. (tog) 38(5), 1–12 (2019)
Xiao, B., Hancock, E.R., Wilson, R.C.: Graph characteristics from the heat kernel trace. Pattern Recogn. 42(11), 2589–2606 (2009)
Xu, K., Hu, W., Leskovec, J., Jegelka, S.: How powerful are graph neural networks? arXiv preprint arXiv:1810.00826 (2018)
Xu, K., Li, C., Tian, Y., Sonobe, T., Kawarabayashi, K.J., Jegelka, S.: Representation learning on graphs with jumping knowledge networks. In: International Conference on Machine Learning, pp. 5453–5462. PMLR (2018)
Yanardag, P., Vishwanathan, S.: Deep graph kernels. In: Proceedings of the 21th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, pp. 1365–1374 (2015)
Ying, R., He, R., Chen, K., Eksombatchai, P., Hamilton, W.L., Leskovec, J.: Graph convolutional neural networks for web-scale recommender systems. In: Proceedings of the 24th ACM SIGKDD International Conference on Knowledge Discovery & Data Mining, pp. 974–983 (2018)
Ying, R., You, J., Morris, C., Ren, X., Hamilton, W.L., Leskovec, J.: Hierarchical graph representation learning with differentiable pooling. arXiv preprint arXiv:1806.08804 (2018)
Acknowledgments
This research was supported by Institute for Information communications Technology Promotion (IITP) grant funded by the Korea government (MSIT) (No. 2022-0-00653, Voice Phishing Information Collection and Processing and Development of a Big Data Based Investigation Support System), BK21 FOUR program of the National Research Foundation of Korea funded by the Ministry of Education(NRF5199991014091), the National Research Foundation of Korea (NRF) grant funded by the Korea government (MSIT) (No. 2021R1A2C2003474) and the Ajou University research fund.
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2024 The Author(s), under exclusive license to Springer Nature Switzerland AG
About this paper
Cite this paper
Jhee, J.H., Yeon, J., Kwak, Y., Shin, H. (2024). Multi-scale Heat Kernel Graph Network for Graph Classification. In: Nicosia, G., Ojha, V., La Malfa, E., La Malfa, G., Pardalos, P.M., Umeton, R. (eds) Machine Learning, Optimization, and Data Science. LOD 2023. Lecture Notes in Computer Science, vol 14506. Springer, Cham. https://doi.org/10.1007/978-3-031-53966-4_20
Download citation
DOI: https://doi.org/10.1007/978-3-031-53966-4_20
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-031-53965-7
Online ISBN: 978-3-031-53966-4
eBook Packages: Computer ScienceComputer Science (R0)