Skip to main content

Annotating the Inferior Alveolar Canal: The Ultimate Tool

  • Conference paper
  • First Online:
Image Analysis and Processing – ICIAP 2023 (ICIAP 2023)

Part of the book series: Lecture Notes in Computer Science ((LNCS,volume 14233))

Included in the following conference series:

  • 495 Accesses

Abstract

The Inferior Alveolar Nerve (IAN) is of main interest in the maxillofacial field, as an accurate localization of such nerve reduces the risks of injury during surgical procedures. Although recent literature has focused on developing novel deep learning techniques to produce accurate segmentation masks of the canal containing the IAN, there are still strong limitations due to the scarce amount of publicly available 3D maxillofacial datasets. In this paper, we present an improved version of a previously released tool, iacat (Inferior Alveolar Canal Annotation Tool), today used by medical experts to produce 3D ground truth annotation. In addition, we release a new dataset, ToothFairy, which is part of the homonymous MICCAI2023 challenge hosted by the Grand-Challenge platform, as an extension of the previously released Maxillo dataset, which was the only publicly available. With ToothFairy, the number of annotations has been increased as well as the quality of existing data.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 69.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 89.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Notes

  1. 1.

    At the moment of writing this paper, there is only one single dataset publicly available: https://ditto.ing.unimore.it/maxillo/.

  2. 2.

    https://www.photoshop.com.

  3. 3.

    https://www.anatomage.com/invivo.

  4. 4.

    Please note that the Maxillo dataset released a total of 343 CBCTs proving a 3D annotation only for 91 of them.

References

  1. Badrinarayanan, V., Kendall, A., Cipolla, R.: SegNet: a deep convolutional encoder-decoder architecture for image segmentation. IEEE Trans. Pattern Anal. Mach. Intell. 39(12), 2481–2495 (2017)

    Article  Google Scholar 

  2. Barraco, M., Stefanini, M., Cornia, M., Cascianelli, S., Baraldi, L., Cucchiara, R.: CaMEL: Mean Teacher Learning for Image Captioning. In: Proceedings of the International Conference on Pattern Recognition (2022)

    Google Scholar 

  3. Bolelli, F., Baraldi, L., Grana, C.: A hierarchical quasi-recurrent approach to video captioning. In: 2018 IEEE International Conference on Image Processing, Applications and Systems (IPAS), pp. 162–167. IEEE (Dec 2018)

    Google Scholar 

  4. Bontempo, G., Porrello, A., Bolelli, F., Calderara, S., Ficarra, E.: DAS-MIL: distilling Across Scales for MIL Classification of Histological WSIs. In: Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 (2023)

    Google Scholar 

  5. Chen, J., et al.: TransUNet: Transformers Make Strong Encoders for Medical Image Segmentation. arXiv preprint arXiv:2102.04306 (2021)

  6. Çiçek, Ö., Abdulkadir, A., Lienkamp, S.S., Brox, T., Ronneberger, O.: 3D U-Net: learning dense volumetric segmentation from sparse annotation. In: Ourselin, S., Joskowicz, L., Sabuncu, M.R., Unal, G., Wells, W. (eds.) MICCAI 2016. LNCS, vol. 9901, pp. 424–432. Springer, Cham (2016). https://doi.org/10.1007/978-3-319-46723-8_49

    Chapter  Google Scholar 

  7. Cipriano, M., Allegretti, S., Bolelli, F., Pollastri, F., Grana, C.: Improving segmentation of the inferior alveolar nerve through deep label propagation. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition (CVPR), pp. 21137–21146. IEEE (2022)

    Google Scholar 

  8. Crowson, M.G., et al.: A contemporary review of machine learning in otolaryngology-head and neck surgery. The Laryngoscope 130(1), 45–51 (2020)

    Article  Google Scholar 

  9. Di Bartolomeo, M., et al.: Inferior alveolar canal automatic detection with deep learning CNNs on CBCTs: development of a novel model and release of open-source dataset and algorithm. Appl. Sci. 13(5), 3271 (2023)

    Article  Google Scholar 

  10. Edelsbrunner, H., Kirkpatrick, D., Seidel, R.: On the shape of a set of points in the plane. IEEE Trans. Inf. Theor. 29(4), 551–559 (1983)

    Article  MathSciNet  MATH  Google Scholar 

  11. Guan, S., Khan, A.A., Sikdar, S., Chitnis, P.V.: Fully dense UNet for 2-D sparse photoacoustic tomography artifact removal. IEEE J. Biomed. Health Inf. 24(2), 568–576 (2019)

    Article  Google Scholar 

  12. Hatamizadeh, A., Nath, V., Tang, Y., Yang, D., Roth, H.R., Xu, D.: Swin UNETR: swin transformers for semantic segmentation of brain tumors in MRI images. In: Crimi, A., Bakas, S. (eds.) Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries. BrainLes 2021. Lecture Notes in Computer Science, vol. 12962. Springer, Cham (2022). https://doi.org/10.1007/978-3-031-08999-2_22

  13. Hwang, J.J., Jung, Y.H., Cho, B.H., Heo, M.S.: An overview of deep learning in the field of dentistry. Imaging Sci. Dent. 49(1), 1–7 (2019)

    Article  Google Scholar 

  14. Jaskari, J., et al.: Deep learning method for mandibular canal segmentation in dental cone beam computed tomography volumes. Sci. Rep. 10(1), 5842 (2020)

    Article  Google Scholar 

  15. Kwak, G.H., et al.: Automatic mandibular canal detection using a deep convolutional neural network. Sci. Rep. 10(1), 5711 (2020)

    Article  Google Scholar 

  16. Lahoud, P.: Development and validation of a novel artificial intelligence driven tool for accurate mandibular canal segmentation on CBCT. J. Dent. 116, 103891 (2022)

    Article  Google Scholar 

  17. Lovino, M., Ciaburri, M.S., Urgese, G., Di Cataldo, S., Ficarra, E.: DEEPrior: a deep learning tool for the prioritization of gene fusions. Bioinformatics 36(10), 3248–3250 (2020)

    Article  Google Scholar 

  18. Lovino, M., Urgese, G., Macii, E., Di Cataldo, S., Ficarra, E.: A deep learning approach to the screening of oncogenic gene fusions in humans. Int. J. Mol. Sci. 20(7), 1645 (2019)

    Article  Google Scholar 

  19. Marconato, E., Bontempo, G., Ficarra, E., Calderara, S., Passerini, A., Teso, S.: Neuro symbolic continual learning: knowledge, reasoning shortcuts and concept rehearsal. In: International Conference on Machine Learning (ICML) (2023)

    Google Scholar 

  20. Mercadante, C., Cipriano, M., Bolelli, F., Pollastri, F., Anesi, A., Grana, C.: A cone beam computed tomography annotation tool for automatic detection of the inferior alveolar nerve canal. In: 16th International Conference on Computer Vision Theory and Applications-VISAPP 2021. vol. 4, pp. 724–731. SciTePress (2021)

    Google Scholar 

  21. Milletari, F., Navab, N., Ahmadi, S.A.: V-Net: fully convolutional neural networks for volumetric medical image segmentation. In: 2016 Fourth International Conference on 3D Vision (3DV), pp. 565–571. IEEE (2016)

    Google Scholar 

  22. Oktay, O., et al.: Attention U-Net: learning where to look for the pancreas. In: Medical Imaging with Deep Learning (2022)

    Google Scholar 

  23. Park, J.S., Chung, M.S., Hwang, S.B., Lee, Y.S., Har, D.H.: Technical report on semiautomatic segmentation using the Adobe Photoshop. J. Dig. Imaging 18, 333–343 (2005)

    Article  Google Scholar 

  24. Pielawski, N., Wählby, C.: Introducing Hann windows for reducing edge-effects in patch-based image segmentation. PloS one 15(3), e0229839 (2020)

    Article  Google Scholar 

  25. Pollastri, F., et al.: A deep analysis on high resolution dermoscopic image classification. IET Comput. Vis. 15(7), 514–526 (2021)

    Article  Google Scholar 

  26. Porrello, A., et al.: Spotting insects from satellites: modeling the presence of Culicoides imicola through Deep CNNs. In: 2019 15th International Conference on Signal-Image Technology & Internet-Based Systems (SITIS), pp. 159–166. IEEE (2019)

    Google Scholar 

  27. Reyes-Herrera, P.H., Ficarra, E.: Computational Methods for CLIP-seq Data Processing. Bioinform. Biol. Insights 8, BBI-S16803 (2014)

    Google Scholar 

  28. Ronneberger, O., Fischer, P., Brox, T.: U-Net: convolutional networks for biomedical image segmentation. In: Navab, N., Hornegger, J., Wells, W.M., Frangi, A.F. (eds.) MICCAI 2015. LNCS, vol. 9351, pp. 234–241. Springer, Cham (2015). https://doi.org/10.1007/978-3-319-24574-4_28

    Chapter  Google Scholar 

  29. Sun, J., Darbehani, F., Zaidi, M., Wang, B.: SAUNet: shape attentive U-Net for interpretable medical image segmentation. In: Martel, A.L. (ed.) MICCAI 2020. LNCS, vol. 12264, pp. 797–806. Springer, Cham (2020). https://doi.org/10.1007/978-3-030-59719-1_77

    Chapter  Google Scholar 

  30. Weissheimer, A., De Menezes, L.M., Sameshima, G.T., Enciso, R., Pham, J., Grauer, D.: Imaging software accuracy for 3-dimensional analysis of the upper airway. Am. J. Orthod. Dentofac. Orthop. 142(6), 801–813 (2012)

    Article  Google Scholar 

  31. Zhou, Z., Rahman Siddiquee, M.M., Tajbakhsh, N., Liang, J.: UNet++: a nested u-net architecture for medical image segmentation. In: Stoyanov, D. (ed.) DLMIA/ML-CDS -2018. LNCS, vol. 11045, pp. 3–11. Springer, Cham (2018). https://doi.org/10.1007/978-3-030-00889-5_1

    Chapter  Google Scholar 

Download references

Acknowledgements

This project has received funding from the Department of Engineering “Enzo Ferrari” of the University of Modena through the FARD-2022 (Fondo di Ateneo per la Ricerca 2022).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Federico Bolelli .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2023 The Author(s), under exclusive license to Springer Nature Switzerland AG

About this paper

Check for updates. Verify currency and authenticity via CrossMark

Cite this paper

Lumetti, L., Pipoli, V., Bolelli, F., Grana, C. (2023). Annotating the Inferior Alveolar Canal: The Ultimate Tool. In: Foresti, G.L., Fusiello, A., Hancock, E. (eds) Image Analysis and Processing – ICIAP 2023. ICIAP 2023. Lecture Notes in Computer Science, vol 14233. Springer, Cham. https://doi.org/10.1007/978-3-031-43148-7_44

Download citation

  • DOI: https://doi.org/10.1007/978-3-031-43148-7_44

  • Published:

  • Publisher Name: Springer, Cham

  • Print ISBN: 978-3-031-43147-0

  • Online ISBN: 978-3-031-43148-7

  • eBook Packages: Computer ScienceComputer Science (R0)

Publish with us

Policies and ethics