Abstract
Some surface properties of carbonate speleothems from Kirillov’s, Pionerskaya and Yaschik Pandory caves in the Republic of Khakasia, as well as Yuryevskaya Cave in the Republic of Tatarstan were investigated. The types of the speleothem samples such as crusts, drips, corallites, and moon milk were studied. All the samples were collected in cave aphotic zones at a wall temperature not higher than + 10 ºC. Differently polished marble onyx, gypsum and glass plates were taken as reference surfaces. The surfaces were processed by polishing, heating, etching chemicals, and adding R2A modified growth media. These modes simulated experimentally common natural processes in the system of “calcium carbonate−chemolithotrophic biofilm”. The speleothem samples under the cave microbial community, which can exist successfully in the upper soil layer, were considered against the background of the reference mineral surfaces. The captive bubble method, SEM, XRD, EDX, as well as DTG analyses were carried out to determine wettability, roughness, total organic matter content, and elemental and mineral compositions of the samples. The metagenome of the microbial community was estimated using 16S rRNA sequence analysis. The influence of fresh and long-lived biofilms on the carbonate surface properties is assessed. The assumption that biofilm dynamics affects the carbonate surface properties and its toughness is substantiated. Our work hypothesized that the part of organic matter can enter the gaps in growing carbonate crystals, then, is sealed with a new mineral phase, and later, is assimilated by heterotrophic and organotrophic organisms.
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References
Andryukov BG, Romashko RV, Efimov TA, Lyapun IN, Bynina MP, Matosova EV (2020) Mechanisms of adhesive-coadhesive interaction of bacteria in the formation of a biofilm. Molekulyarnaya Genetika, Mikrobiologiya i Virusologiya (Molecular Genetics, Microbiology and Virology) 35(4):195–201 (in Russian) https://doi.org/10.17116/molgen202038041155
Banks ED, Taylor NM, Gulley J, Lubbers BR, Giarrizo JG, Bullen HA, Hoehler TM and Barton HA (2010) Bacterial calcium carbonate precipitation in cave environments: a function of calcium homeostasis. Geomicrobiology Journal 27(5):444 — 454. https://doi.org/10.1080/01490450903485136
Callahan BJ, McMurdie PJ, Rosen MJ, Han AW, Johnson AJ, Holmes SP (2016) DADA2: High-resolution sample inference from Illumina amplicon data. Nat Methods 13(7):581-583. https://doi.org/10.1038/nmeth.3869
Daims H, Lebedeva EV, Pjevac P, Han P, Herbold C, Albertsen M, Jehmlich N, Palatinszky M, Vierheilig J, Bulaev A, Kirkegaard RH, von Bergen M, Rattei T, Bendinger B, Nielsen PH, Wagner M (2015) Complete nitrification by Nitrospira bacteria. Nature. 24;528(7583):504–9. https://doi.org/10.1038/nature16461
D'Angeli IM, Serrazanetti DI, Montanari C, Vannini L, Gardini F, De Waele J (2017) Geochemistry and microbial diversity of cave waters in the gypsum karst aquifers of Emilia Romagna region, Italy. Science of the Total Environment 598:538–552. https://doi.org/10.1016/j.scitotenv.2017.03.270
Glazovskaya M A and Dobrovolskaya N G (1984) Geochemical functions of microorganisms. Moscow State University, Moscow (in Russian)
Golovanova OA (2022) Crystallogenesis in the human body. Dostoevsky Omsk State University, Omsk (in Russian)
Gray CJ and Engel AS (2013) Microbial impact on aquifer carbonate geochemistry The ISME Journal. International Society for Microbial Ecology 7:325–337. https://doi.org/10.1038/ismej.2012.105
Guvensen NC, Demir S, Ozdemir G (2013) Effects of magnesium and calcium cations on biofilm formation by Sphingomonas paucimobilis from an industrial environment. Current Opinion in Biotechnology 24(1):S68. https://doi.org/10.1016/j.copbio.2013.05.185
Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glöckner FO (2013) Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic acids research 41(1): e1. https://doi.org/10.1093/nar/gks808
Leonova LV, Kuz’mina LY, Ryabova AS, Simakova YS, Glavatskikh SP, Cherviatcova OY (2015) Modern nodules: mineralogical investigation and modelling experiments. Vestnik IG Komi SC UB RAS 10:45-51 https://doi.org/10.19110/2221-1381-2015-10-45-51
McMurdie PJ, Holmes S (2013) Phyloseq: An R package for reproducible interactive analysis and graphics of microbiome census data. PLoS ONE 8(4):e61217. https://doi.org/10.1371/journal.pone.0061217
Melim LA, Northup DE, Boston PJ, Spilde MN (2016) Preservation of fossil microbes and biofilm in cave pool carbonates and comparison to other microbial carbonate environments. PALAIOS 31:177–189. https://doi.org/10.2110/palo.2015.033
Mouraviev FA, Vinokurov VM, Galeev AA et al. (2006) Paramagnetism and the nature of dispersed organic matter in the Permian deposits of Tatarstan. Georesources 2(19):40-45 (in Russian)
Myszka B, Schußler M, Hurle K, Demmert B, Detsch R, Boccaccini AR, Wolf SE (2019) Phase-specific bioactivity and altered Ostwald ripening pathways of calcium carbonate polymorphs in simulated body fluid. Royal Soc of Chem Adv. 9:18232–18244
Nomokonov VE (1969) On the stratigraphy of the Upper Cambrian and Cambrian deposits in the region of Yefremkino and Malaya Syja settlements. Izvestiya Tomskogo politekhnicheskogo instituta 196:40-47 (in Russian)
Pronk GJ, Heister K, Vogel C et al. (2017) Interaction of minerals, organic matter, and microorganisms during biogeochemical interface formation as shown by a series of artificial soil experiments. Biology and Fertility of Soils 53:9–22. https://doi.org/10.1007/s00374-016-1161-1
Sofinskaya OA, Kosterin AV, Galeev AA (2022) Heterogeneity of Wetting Contact Angle in Hydrophobized Soils and Parent Rocks. Eurasian Soil Sc. 55:339–347. https://doi.org/10.1134/S1064229322030139
Trung TT, Bott NJ, Dai Lam N, Trung NN, Hoang Thi Dang O, Hoang Le D, Tung Le L, Hoang Chu H (2019) The role of pseudomonas in heterotrophic nitrification: a case study on shrimp ponds (Litopenaeus vannamei) in soc trang province. Microorganisms. 29:7(6):155. https://doi.org/10.3390/microorganisms7060155
Tugarova MA (2021) Indicator signs of carbonate microbialites in black shale formations: isotopic composition and biomarkers. Vestnik of geosciences 11(323):55-61. https://doi.org/10.19110/geov.2021.11.5
Turrini P, Tescari M, Visaggio D, Pirolo M, Lugli GA, Ventura M, Frangipani E, Visca P (2020) The microbial community of a biofilm lining the wall of a pristine cave in Western New Guinea Microbiological Research 241:126584
Wagner M and Horn H (2017) Optical coherence tomography in biofilm research: A comprehensive review. Biotechnology and Bioengineering 114(7):1386-1402. https://doi.org/10.1002/bit.26283
Wiseschart A, Mhuantong W, Tangphatsornruang S, Chantasingh D, Pootanakit K (2019) Shotgun metagenomic sequencing from Manao-Pee cave, Thailand, reveals insight into the microbial community structure and its metabolic potential. BMC Microbiol. 19:144
Zorina AS, Maksimova YG, Demakov VA (2019) Biofilm formation by monocultures and mixed cultures of Alcaligenes Faecalis 2 and Rhodococcus Ruber Gt 1. Microbiology 88(2):164-171. https://doi.org/10.1134/S0026261719020140
Acknowledgements
This paper has been supported by the Kazan Federal University Strategic Academic Leadership Program (PRIORITY-2030).
Funding
This study was funded by Russian Foundation for Basic Research, project number 20–05-00,151.
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Sofinskaya, O.A. et al. (2023). Surface Properties of Carbonate Speleothems in Karst Caves Changing Under Biofilms. In: Frank-Kamenetskaya, O.V., Vlasov, D.Y., Panova, E.G., Alekseeva, T.V. (eds) Biogenic—Abiogenic Interactions in Natural and Anthropogenic Systems 2022. BIOCOS 2022. Springer Proceedings in Earth and Environmental Sciences. Springer, Cham. https://doi.org/10.1007/978-3-031-40470-2_29
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