Abstract
There is a growing market demand for cured meat and a global increased need for animal products driven by demographic growth. However, supply chains are challenged by ethical concerns related to animal welfare, environmental impact and loss of biodiversity. In the short term, these challenges can be faced by following FAO recommendations for the sustainable intensification of livestock breeding, by exploiting advances in livestock housing, management and feeding. However, ongoing climate change is further threatening animal health and farming sustainability. This calls for sustainable changes in production systems to ensure food security globally. In this regard, genetics may provide long-term solutions to adapt animals to environmental condition and improve resilience to diseases, longevity, animal welfare and reproduction rates. To do this, a comprehensive knowledge of the genetic control of the traits of interest is necessary to facilitate genomic selection or to select targets for gene editing. The genetic characterization of local breeds, adapted to various environmental conditions, will help to identify the genes and genomic regions controlling the adaptation and valorize these breeds for use in sustainable farming. This chapter reviews research in the field of genetics related to sustainable livestock production in the cured meat supply chain and identifies the main new opportunities.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
Similar content being viewed by others
References
Ai, H., Fang, X., Yang, B., Huang, Z., Chen, H., Mao, L., Zhang, F., Zhang, L., Cui, L., He, W., et al. (2015). Adaptation and possible ancient interspecies introgression in pigs identified by whole-genome sequencing. Nature Genetics, 47(3), 217–225. https://doi.org/10.1038/ng.3199. [Accessed 2023 Feb 15].
Ai, H., Yang, B., Li, J., Xie, X., Chen, H., & Ren, J. (2014). Population history and genomic signatures for high-altitude adaptation in tibetan pigs. BMC Genomics, 15(1), 1–14. https://doi.org/10.1186/1471-2164-15-834/FIGURES/5. [Accessed 2023 Feb 16].
Amills, M., Ramírez, O., Galman-Omitogun, O., & Clop, A. (2013). Domestic pigs in Africa. African Archaeological Review, 30(1), 73–82. https://doi.org/10.1007/S10437-012-9111-2/TABLES/1. [Accessed 2023 Feb 17].
Ammirato, S., & Felicetti, A. M. (2013). The potential of agritourism in revitalizing rural communities: Some empirical results. IFIP Advances in Information and Communication Technology, 408, 489–497. https://doi.org/10.1007/978-3-642-40543-3_52/COVER. [Accessed 2023 Feb 14].
Bai, X., & Plastow, G. S. (2022). Breeding for disease resilience: Opportunities to manage polymicrobial challenge and improve commercial performance in the pig industry. CABI Agriculture and Bioscience, 3(1), 1–17. https://doi.org/10.1186/S43170-022-00073-Y. [Accessed 2023 Feb 16].
Berghof, T. V. L., Poppe, M., & Mulder, H. A. (2019). Opportunities to improve resilience in animal breeding programs. Frontiers in Genetics, 9, 1–15. https://doi.org/10.3389/fgene.2018.00692
Berihulay, H., Abied, A., He, X., Jiang, L., & Ma, Y. (2019). Adaptation mechanisms of small ruminants to environmental heat stress. Animals, 9(3), 75. https://doi.org/10.3390/ANI9030075. [Accessed 2023 Feb 15].
Bishop, S. C., & Woolliams, J. A. (2004). Genetic approaches and technologies for improving the sustainability of livestock production. Journal of the Science of Food and Agriculture, 84(9), 911–919. https://doi.org/10.1002/JSFA.1704. [Accessed 2023 Feb 17].
Bloemhof, S., van der Waaij, E. H., Merks, J. W. M., & Knol, E. F. (2008). Sow line differences in heat stress tolerance expressed in reproductive performance traits. Journal of Animal Science, 86(12), 3330–3337. https://doi.org/10.2527/JAS.2008-0862. [Accessed 2023 Feb 17].
Boddicker, N., Waide, E. H., Rowland, R. R. R., Lunney, J. K., Garrick, D. J., Reecy, J. M., & Dekkers, J. C. M. (2012). Evidence for a major QTL associated with host response to Porcine Reproductive and Respiratory Syndrome Virus challenge. Journal of Animal Science, 90(6), 1733–1746. https://doi.org/10.2527/JAS.2011-4464. [Accessed 2023 Feb 16].
Boddicker, N. J., Bjorkquist, A., Rowland, R. R., Lunney, J. K., Reecy, J. M., & Dekkers, J. C. M. (2014a). Genome-wide association and genomic prediction for host response to porcine reproductive and respiratory syndrome virus infection. Genetics Selection Evolution, 46(1), 1–14. https://doi.org/10.1186/1297-9686-46-18/FIGURES/6. [Accessed 2023 Feb 16].
Boddicker, N. J., Garrick, D. J., Rowland, R. R. R., Lunney, J. K., Reecy, J. M., & Dekkers, J. C. M. (2014b). Validation and further characterization of a major quantitative trait locus associated with host response to experimental infection with porcine reproductive and respiratory syndrome virus. Animal Genetics, 45(1), 48–58. https://doi.org/10.1111/AGE.12079. [Accessed 2023 Feb 16].
Brito, L. F., Bedere, N., Douhard, F., Oliveira, H. R., Arnal, M., Peñagaricano, F., Schinckel, A. P., Baes, C. F., & Miglior, F. (2021). Review: Genetic selection of high-yielding dairy cattle toward sustainable farming systems in a rapidly changing world. Animal, 15, 100292. https://doi.org/10.1016/J.ANIMAL.2021.100292
Broom, D. M. (2010). Animal welfare: An aspect of care, sustainability, and food quality required by the public. Journal of Veterinary Medical Education, 37(1), 83–88. https://doi.org/10.3138/JVME.37.1.83. [Accessed 2023 Feb 17].
Bruford, M. W., Ginja, C., Hoffmann, I., Joost, S., Wengel, P. O., Alberto, F. J., Amaral, A. J., Barbato, M., Biscarini, F., Colli, L., et al. (2015). Prospects and challenges for the conservation of farm animal genomic resources, 2015–2025. Frontiers in Genetics, 6(OCT), 314. https://doi.org/10.3389/FGENE.2015.00314/BIBTEX
Calvert, J. G., Slade, D. E., Shields, S. L., Jolie, R., Mannan, R. M., Ankenbauer, R. G., & Welch, S.-K. W. (2007). CD163 expression confers susceptibility to porcine reproductive and respiratory syndrome viruses. Journal of Virology, 81(14), 7371–7379. https://doi.org/10.1128/JVI.00513-07/ASSET/9299FC66-405A-4185-9651-51C9319879DD/ASSETS/GRAPHIC/ZJV0140793870008.JPEG. [Accessed 2023 Feb 16].
Chen, R., Chu, Q., Shen, C., Tong, X., Gao, S., Liu, X., Zhou, B., & Schinckel, A. P. (2019). Identification of single nucleotide polymorphisms in porcine MAOA gene associated with aggressive behavior of weaned pigs after group mixing. Animals, 9(11), 952. https://doi.org/10.3390/ANI9110952. [Accessed 2023 Feb 17].
Cheng, J., Fernando, R., Cheng, H., Kachman, S. D., Lim, K. S., Harding, J. C. S., Dyck, M. K., Fortin, F., Plastow, G. S., Canada, P. G., & Dekkers, J. C. M. (2022). Genome-wide association study of disease resilience traits from a natural polymicrobial disease challenge model in pigs identifies the importance of the major histocompatibility complex region. G3 Genes|Genomes|Genetics, 12(3). https://doi.org/10.1093/G3JOURNAL/JKAB441. [Accessed 2023 Feb 16].
Cheng, J., Putz, A. M., Harding, J. C. S., Dyck, M. K., Fortin, F., Plastow, G. S., Canada, P. G., & Dekkers, J. C. M. (2020). Genetic analysis of disease resilience in wean-to-finish pigs from a natural disease challenge model. Journal of Animal Science, 98(8). https://doi.org/10.1093/JAS/SKAA244. [Accessed 2023 Feb 16].
Chiofalo, B., Liotta, L., Zumbo, A., & Chiofalo, L. (2003). Seasonal variations of free fatty acids in plasma of “Nero Siciliano” pigs living in extensive conditions. Veterinary Research Communications, 27(SUPPL. 1), 253–255. https://doi.org/10.1023/B:VERC.0000014153.61928.EC/METRICS. [Accessed 2023 Feb 13].
Crovetti, A., Bozzi, R., Nardi, L., Franci, O., & Fontanesi, L. (2016). Assessment of variability of genes associated with meat quality traits in Cinta Senese pigs. Italian Journal of Animal Science, 6(sup1), 101. https://doi.org/10.4081/IJAS.2007.1S.101. [Accessed 2023 Feb 17].
Crovetti, A., Sirtori, F., Pugliese, C., Franci, O., & Bozzi, R. (2013). Pedigree analysis of Cinta Senese and Mora Romagnola breeds. In: Acta argiculturae Slovenica, Supplement. Vol. 4. [place unknown]; p. 41–44.
D’Alessandro, E., Fontanesi, L., Liotta, L., Davoli, R., Chiofalo, V., & Russo, V. (2007). Analysis of the MC1R gene in the nero siciliano pig breed and usefulness of this locus for breed traceability. Veterinary Research Communications, 31(SUPPL. 1), 389–392. https://doi.org/10.1007/S11259-007-0063-Y/METRICS. [Accessed 2023 Feb 15].
D’Alessandro, E., Giosa, D., Sapienza, I., Giuffrè, L., Cigliano, R. A., Romeo, O., & Zumbo, A. (2019a). Whole genome SNPs discovery in Nero Siciliano pig. Genetics and Molecular Biology, 42(3), 594–602. https://doi.org/10.1590/1678-4685-GMB-2018-0169. [Accessed 2023 Feb 15].
D’Alessandro, E., Sapienza, I., Giosa, D., Giuffrè, L., & Zumbo, A. (2019b). In silico analysis of meat quality candidate genes among Nero Siciliano, and Italian heavy pigs genomes. Large Animal Review, 25(4), 137–140. Accessed Feb 15, 2023, from https://www.largeanimalreview.com/index.php/lar/article/view/91
Dauphin, B., Rellstab, C., Wüest, R. O., Karger, D. N., Holderegger, R., Gugerli, F., & Manel, S. (2022). Re-thinking the environment in landscape genomics. Trends in Ecology and Evolution, 38(3), 261–274. https://doi.org/10.1016/j.tree.2022.10.010. [Accessed 2023 Feb 16].
Do, D. N., Strathe, A. B., Ostersen, T., Pant, S. D., & Kadarmideen, H. N. (2014). Genome-wide association and pathway analysis of feed efficiency in pigs reveal candidate genes and pathways for residual feed intake. Frontiers in Genetics, 5(AUG), 307. https://doi.org/10.3389/FGENE.2014.00307/
Duijvesteijn, N., Knol, E. F., Merks, J. W. M., Crooijmans, R. P. M. A., Groenen, M. A. M., Bovenhuis, H., & Harlizius, B. (2010). A genome-wide association study on androstenone levels in pigs reveals a cluster of candidate genes on chromosome 6. BMC Genet [Internet]., 11(1), 1–11. https://doi.org/10.1186/1471-2156-11-42/TABLES/3. [Accessed 2023 Feb 16].
Elayadeth-Meethal, M., Thazhathu Veettil, A., Maloney, S. K., Hawkins, N., Misselbrook, T. H., Sejian, V., Rivero, M. J., & Lee, M. R. F. (2018). Size does matter: Parallel evolution of adaptive thermal tolerance and body size facilitates adaptation to climate change in domestic cattle. Ecology and Evolution, 8(21), 10608–10620. https://doi.org/10.1002/ECE3.4550. [Accessed 2023 Feb 15].
Engblom, L., Lundeheim, N., Dalin, A. M., & Andersson, K. (2007). Sow removal in Swedish commercial herds. Livestock Science, 106(1), 76–86. https://doi.org/10.1016/J.LIVSCI.2006.07.002
Evans, G. J., Giuffra, E., Sanchez, A., Kerje, S., Davalos, G., Vidal, O., Illán, S., Noguera, J. L., Varona, L., Velander, I., et al. (2003). Identification of quantitative trait loci for production traits in commercial pig populations. Genetics, 164(2), 621–627. https://doi.org/10.1093/GENETICS/164.2.621. [Accessed 2023 Feb 16].
Fontanesi, L. (2016). Genetic authentication and traceability of food products of animal origin: new developments and perspectives. Italian Journal of Animal Science, 8(SUPPL. 2), 9–18. https://doi.org/10.4081/IJAS.2009.S2.9. [Accessed 2023 Feb 14].
Fontanesi, L., D’Alessandro, E., Scotti, E., Liotta, L., Crovetti, A., Chiofalo, V., & Russo, V. (2010). Genetic heterogeneity and selection signature at the KIT gene in pigs showing different coat colours and patterns. Animal Genetics, 41(5), 478–492. https://doi.org/10.1111/J.1365-2052.2010.02054.X. [Accessed 2023 Feb 15].
Franci, O., Gandini, G., & Bozzi, R. (2004). Why and how to select a local porcine breed: The case of the Cinta Senese. Options Méditerranéennes. [Accessed 2023 Feb 15]. www.anas.it
Franci, O., & Pugliese, C. (2016). Italian autochthonous pigs: progress report and research perspectives. Italian Journal of Animal Science, 6(SUPPL. 1), 663–671. https://doi.org/10.4081/IJAS.2007.1S.663. [Accessed 2023 Feb 15].
Fujii, J., Otsu, K., Zorzato, F., de Leon, S., Khanna, V. K., Weiler, J. E., O’Brien, P. J., & Maclennan, D. H. (1991). Identification of a mutation in porcine ryanodine receptor associated with malignant hyperthermia. Science (1979), 253(5018), 448–451. https://doi.org/10.1126/SCIENCE.1862346. [Accessed 2023 Feb 14].
Galanopoulos, K., Aggelopoulos, S., Kamenidou, I., & Mattas, K. (2006). Assessing the effects of managerial and production practices on the efficiency of commercial pig farming. Agricultural Systems, 88(2–3), 125–141. https://doi.org/10.1016/J.AGSY.2005.03.002
Gamborg, C., & Sandøe, P. (2005). Sustainability in farm animal breeding: A review. Livestock Production Science, 92(3), 221–231. https://doi.org/10.1016/J.LIVPRODSCI.2004.08.010
Gan, M., Shen, L., Fan, Y., Guo, Z., Liu, B., Chen, L., Tang, G., Jiang, Y., Li, X., Zhang, S., et al. (2019). High altitude adaptability and meat quality in Tibetan pigs: A reference for local pork processing and genetic improvement. Animals, 9(12), 1080. https://doi.org/10.3390/ANI9121080. [Accessed 2023 Feb 16].
Gandini, G., Orlandini, P., Franci, O., & Campodoni, G. (1998). Policies to decrease inbreeding in the Cinta Senese pig. Options Méditerranéennes. 35–37. https://om.ciheam.org/article.php?IDPDF=600110 [Accessed 2023 Feb 15]
Gourdine, J. L., Mandonnet, N., Giorgi, M., & Renaudeau, D. (2017). Genetic parameters for thermoregulation and production traits in lactating sows reared in tropical climate. Animal, 11(3), 365–374. https://doi.org/10.1017/S175173111600135X
Gourdine, J. L., Rauw, W. M., Gilbert, H., & Poullet, N. (2021). The genetics of thermoregulation in pigs: A review. Frontiers in Veterinary Science, 8, 1501. https://doi.org/10.3389/FVETS.2021.770480/BIBTEX
Groenen, M. A. M. (2016). A decade of pig genome sequencing: A window on pig domestication and evolution. Genetics Selection Evolution, 48(1), 1–9. https://doi.org/10.1186/S12711-016-0204-2/FIGURES/1. [Accessed 2023 Feb 15].
Groenen, M. A. M., Archibald, A. L., Uenishi, H., Tuggle, C. K., Takeuchi, Y., Rothschild, M. F., Rogel-Gaillard, C., Park, C., Milan, D., Megens, H. J., et al. (2012). Analyses of pig genomes provide insight into porcine demography and evolution. Nature, 491(7424), 393–398. https://doi.org/10.1038/nature11622. [Accessed 2023 Feb 15].
Harlizius, B., van Wijk, R., & Merks, J. W. M. (2004). Genomics for food safety and sustainable animal production. Journal of Biotechnology, 113(1–3), 33–42. https://doi.org/10.1016/J.JBIOTEC.2004.03.021
Hayes, B. (2013). Overview of statistical methods for genome-wide association studies (GWAS). Methods in Molecular Biology, 1019, 149–169. https://doi.org/10.1007/978-1-62703-447-0_6/FIGURES/00064. [Accessed 2022 Nov 28].
Hayes, B. J., Lewin, H. A., & Goddard, M. E. (2013). The future of livestock breeding: Genomic selection for efficiency, reduced emissions intensity, and adaptation. Trends in Genetics, 29(4), 206–214. https://doi.org/10.1016/J.TIG.2012.11.009
Herrero-Medrano, J. M., Megens, H. J., Groenen, M. A. M., Bosse, M., Pérez-Enciso, M., & Crooijmans, R. P. M. A. (2014). Whole-genome sequence analysis reveals differences in population management and selection of European low-input pig breeds. BMC Genomics, 15(1), 1–12. https://doi.org/10.1186/1471-2164-15-601/FIGURES/3. [Accessed 2023 Feb 15].
Homma, C., Hirose, K., Ito, T., Kamikawa, M., Toma, S., Nikaido, S., Satoh, M., & Uemoto, Y. (2021). Estimation of genetic parameter for feed efficiency and resilience traits in three pig breeds. Animal, 15(11). https://doi.org/10.1016/j.animal.2021.100384
Horodyska, J., Hamill, R. M., Varley, P. F., Reyer, H., & Wimmers, K. (2017). Genome-wide association analysis and functional annotation of positional candidate genes for feed conversion efficiency and growth rate in pigs. PLoS One, 12(6), e0173482. https://doi.org/10.1371/JOURNAL.PONE.0173482. [Accessed 2023 Feb 17].
Jensen, J. D., Foll, M., & Bernatchez, L. (2016). The past, present and future of genomic scans for selection. Molecular Ecology, 25(1), 1–4. https://doi.org/10.1111/MEC.13493. [Accessed 2023 Feb 16].
Kauffman, R. G., Cassens, R. G., Scherer, A., & Meeker, D. L. (1993). Variation sin pork quality: History, definition, extent, resolution. Health and Production.
Korte, A., & Farlow, A. (2013). The advantages and limitations of trait analysis with GWAS: A review. Plant Methods, 9(1), 1–9. https://doi.org/10.1186/1746-4811-9-29/FIGURES/4. [Accessed 2022 Nov 28].
Kumar, P., Abubakar, A. A., Verma, A. K., Umaraw, P., Adewale Ahmed, M., Mehta, N., Nizam Hayat, M., Kaka, U., & Sazili, A. Q. (2022). New insights in improving sustainability in meat production: Opportunities and challenges. https://doi.org/10.1080/10408398.2022.2096562.. [Accessed 2023 Jan 12]
Lauvie, A., Audiot, A., Couix, N., Casabianca, F., Brives, H., & Verrier, E. (2011). Diversity of rare breed management programs: Between conservation and development. Livestock Science, 140(1–3), 161–170. https://doi.org/10.1016/J.LIVSCI.2011.03.025
Lucot, K. L., Spangler, M. L., Trenhaile, M. D., Kachman, S. D., & Ciobanu, D. C. (2015). Evaluation of reduced subsets of single nucleotide polymorphisms for the prediction of age at puberty in sows. Animal Genetics, 46(4), 403–409. https://doi.org/10.1111/AGE.12310. [Accessed 2023 Feb 17].
Luise, D., Motta, V., Bertocchi, M., Salvarani, C., Clavenzani, P., Fanelli, F., Pagotto, U., Bosi, P., & Trevisi, P. (2019). Effect of Mucine 4 and Fucosyltransferase 1 genetic variants on gut homoeostasis of growing healthy pigs. Journal of Animal Physiology and Animal Nutrition (Berlin), 103(3), 801–812. https://doi.org/10.1111/JPN.13063. [Accessed 2023 Feb 15].
Masson-Delmotte, V., Zhai, P., Pörtner, H.-O., Roberts, D., Skea, J., Shukla, P.R., Pirani, A., Moufouma-Okia, W., Péan, C., & Pidcock, R., et al. (2019). Global warming of 1.5°C An IPCC Special Report on the impacts of global warming of 1.5°C above pre-industrial levels and related global greenhouse gas emission pathways, in the context of strengthening the global response to the threat of climate change, sustainable development, and efforts to eradicate poverty. [Accessed 2023 Feb 17]. www.environmentalgraphiti.org
Mayorga, E. J., Renaudeau, D., Ramirez, B. C., Ross, J. W., & Baumgard, L. H. (2019). Heat stress adaptations in pigs. Animal Frontiers, 9(1), 54–61. https://doi.org/10.1093/AF/VFY035. [Accessed 2023 Feb 17].
McGlone, J. J., Aviles-Rosa, E. O., Archer, C., Wilson, M. M., Jones, K. D., Matthews, E. M., & Reyes, E. (2021). Understanding sow sexual behavior and the application of the boar pheromone to stimulate sow reproduction. Animal Reproduction in Veterinary Medicine. [Accessed 2023 Feb 16].
Meade, M., & Miller, M. (1990). The use of rapid chilling to reduce pale, soft and exudative pork from highly stressed market hogs. Journal of Animal Science.. [Accessed 2023 Feb 14].
Meisinger, J., & Berg, E. (2006). United States pork industry quality survey. [Accessed 2023 Feb 14].
Mellencamp, M. A., Galina-Pantoja, L., Gladney, C. D., & Torremorell, M. (2008). Improving pig health through genomics: A view from the industry. Developments in Biologicals (Basel), 132, 35–41. https://doi.org/10.1159/000317142. [Accessed 2023 Feb 16].
Merilä, J., & Sheldon, B. C. (2000). Lifetime reproductive success and heritability in nature. American Naturalist, 155(3), 307–310. https://doi.org/10.1086/303330/ASSET/IMAGES/LARGE/FG3.JPEG. [Accessed 2023 Feb 17].
Merks, J. W. M., Hanenberg, E. H. A. T., Bloemhof, S., & Knol, E. F. (2009). Genetic opportunities for pork production without castration. Animal Welfare, 18(4), 539–544. https://doi.org/10.1017/S0962728600000968. [Accessed 2023 Feb 17].
Merks, J. W. M., Mathur, P. K., & Knol, E. F. (2012). New phenotypes for new breeding goals in pigs. Animal, 6(4), 535–543. https://doi.org/10.1017/S1751731111002266
Meuwissen, T. H. E., Hayes, B. J., & Goddard, M. E. (2001). Prediction of total genetic value using genome-wide dense marker maps. Genetics, 157(4), 1819–1829. https://doi.org/10.1093/GENETICS/157.4.1819. [Accessed 2022 Dec 21].
Moretti, R., Criscione, A., Turri, F., Bordonaro, S., Marletta, D., Castiglioni, B., & Chessa, S. (2022). A 20-SNP panel as a tool for genetic authentication and traceability of pig breeds. Animals, 12(11), 1335. https://doi.org/10.3390/ANI12111335/S1. [Accessed 2023 Feb 15].
Moxley, R. A. (2000). Edema disease. Veterinary Clinics of North America: Food Animal Practice, 16(1), 175–185. https://doi.org/10.1016/S0749-0720(15)30142-0
Muñoz, M., Bozzi, R., García-Casco, J., Núñez, Y., Ribani, A., Franci, O., García, F., Škrlep, M., Schiavo, G., Bovo, S., et al. (2019). Genomic diversity, linkage disequilibrium and selection signatures in European local pig breeds assessed with a high density SNP chip. Scientific Reports, 9(1). https://doi.org/10.1038/s41598-019-49830-6
Nguyen, D. T., Kyooyeol, L., Choi, H., Choi, M. K., Le, M. T., Song, N., Kim, J. H., Seo, H. G., Oh, J. W., Lee, K., et al. (2012). The complete swine olfactory subgenome: Expansion of the olfactory gene repertoire in the pig genome. BMC Genomics, 13(1), 1–12. https://doi.org/10.1186/1471-2164-13-584/TABLES/6. [Accessed 2023 Feb 16].
Nonneman, D. J., & Lents, C. A. (2022). Functional genomics of reproduction in pigs: Are we there yet? Molecular Reproduction and Development. https://doi.org/10.1002/MRD.23625.. [Accessed 2023 Feb 17]
Norris, D., Ng, J., & Olushola, J. A. (2014). Genetic selection for docility: A review. The Journal of Animal and Plant Science, 24(2) https://www.researchgate.net/publication/286098749 [Accessed 2023 Feb 17]
Nurk, S. et al (2022). The complete sequence of a human genome. Science, 376:44–53. https://doi.org/10.1126/science.abj6987
Olsen, P., & Borit, M. (2013). How to define traceability. Trends in Food Science and Technology, 29(2), 142–150. https://doi.org/10.1016/J.TIFS.2012.10.003
Owen, B. L., Montgomery, J. L., Ramsey, C. B., & Miller, M. F. (2000). Preslaughter resting and hot-fat trimming effects on the incidence of pale, soft and exudative (PSE) pork and ham processing characteristics. Meat Science, 54(3), 221–229. https://doi.org/10.1016/S0309-1740(99)00083-2. [Accessed 2023 Feb 14].
Patience, J. F., Rossoni-Serão, M. C., & Gutiérrez, N. A. (2015). A review of feed efficiency in swine: Biology and application. Journal of Animal Science and Biotechnology, 6(1), 1–9. https://doi.org/10.1186/S40104-015-0031-2/TABLES/4. [Accessed 2023 Feb 17].
Poklukar, K., Čandek-Potokar, M., Lukač, N. B., Tomažin, U., & Škrlep, M. (2020). Lipid deposition and metabolism in local and modern pig breeds: A review. Animals, 10(3), 424. https://doi.org/10.3390/ANI10030424. [Accessed 2023 Feb 16].
Putz, A. M., Harding, J. C. S., Dyck, M. K., Fortin, F., Plastow, G. S., & Dekkers, J. C. M. (2019). Novel resilience phenotypes using feed intake data from a natural disease challenge model in wean-to-finish pigs. Frontiers in Genetics, 10(JAN), 660. https://doi.org/10.3389/FGENE.2018.00660/BIBTEX
Ramos, A. M., Crooijmans, R. P. M. A., Affara, N. A., Amaral, A. J., Archibald, A. L., Beever, J. E., Bendixen, C., Churcher, C., Clark, R., Dehais, P., et al. (2009). Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology. PLoS One, 4(8), e6524. https://doi.org/10.1371/JOURNAL.PONE.0006524. [Accessed 2023 Feb 17].
Rauw, W. M., Rydhmer, L., Kyriazakis, I., Øverland, M., Gilbert, H., Dekkers, J. C. M., Hermesch, S., Bouquet, A., Gómez Izquierdo, E., Louveau, I., & Gomez-Raya, L. (2020). Prospects for sustainability of pig production in relation to climate change and novel feed resources. Journal of the Science of Food and Agriculture, 100(9), 3575–3586. https://doi.org/10.1002/jsfa.10338
Reiner, G. (2016). Genetic resistance – an alternative for controlling PRRS? Porcine Health Management, 2(1), 1–11. https://doi.org/10.1186/S40813-016-0045-Y. [Accessed 2023 Feb 16].
Robic, A., Larzul, C., & Bonneau, M. (2008). Genetic and metabolic aspects of androstenone and skatole deposition in pig adipose tissue: A review (Open Access publication). Genetics Selection Evolution, 40(1), 1–15. https://doi.org/10.1186/1297-9686-40-1-129. [Accessed 2023 Feb 17].
Rohrer, G. A., Brown-Brandl, T., Rempel, L. A., Schneider, J. F., & Holl, J. (2013). Genetic analysis of behavior traits in swine production. Livestock Science, 157(1), 28–37. https://doi.org/10.1016/J.LIVSCI.2013.07.002
Rothschild, M. F., & Plastow, G. S. (2014). Applications of genomics to improve livestock in the developing world. Livestock Science, 166(1), 76–83. https://doi.org/10.1016/J.LIVSCI.2014.03.020
Russo, V., Fontanesi, L., Davoli, R., Chiofalo, L., Liotta, L., & Zumbo, A. (2004). Analisi di alcune mutazioni puntiformi in geni maggiori e geni candidati per caratteri produttivi nella razza suina nero siciliano. Italian Journal of Animal Science, 3(1), 19–29. https://doi.org/10.4081/IJAS.2004.19. [Accessed 2023 Feb 13].
Rydhmer, L., & Canario, L. (2022). Behavioral genetics in pigs and relations to welfare. Genetics and the Behavior of Domestic Animals, 3rd ed. 325–375. https://doi.org/10.1016/B978-0-323-85752-9.00008-1.
Samorè, A. B., & Fontanesi, L. (2016). Genomic selection in pigs: State of the art and perspectives. Italian Journal of Animal Science, 15(2), 211–232. https://doi.org/10.1080/1828051X.2016.1172034. [Accessed 2023 Feb 17].
Sanglard, L. P., Fernando, R. L., Gray, K. A., Linhares, D. C. L., Dekkers, J. C. M., Niederwerder, M. C., & Serão, N. V. L. (2020). Genetic analysis of antibody response to porcine reproductive and respiratory syndrome vaccination as an indicator trait for reproductive performance in commercial sows. Frontiers in Genetics, 11, 1011. https://doi.org/10.3389/FGENE.2020.01011/BIBTEX
Saravanan, K. A., Panigrahi, M., Kumar, H., Bhushan, B., Dutt, T., & Mishra, B. P. (2020). Selection signatures in livestock genome: A review of concepts, approaches and applications. Livestock Science, 241, 104257. https://doi.org/10.1016/J.LIVSCI.2020.104257
Schiavo, G., Bovo, S., Muñoz, M., Ribani, A., Alves, E., Araújo, J. P., Bozzi, R., Čandek-Potokar, M., Charneca, R., Fernandez, A. I., et al. (2021). Runs of homozygosity provide a genome landscape picture of inbreeding and genetic history of European autochthonous and commercial pig breeds. Animals Genetics, 52(2), 155–170. https://doi.org/10.1111/AGE.13045. [Accessed 2023 Feb 15].
Schwartz, R., & Teramo, K. A. (2000). A DNA polymorphism influencing α(1,2)fucosyltransferase activity of the pig FUT1 enzyme determines susceptibility of small intestinal epithelium to Escherichia coli F18 adhesion. Immunogenetics, 52(1–2), 129–136. https://doi.org/10.1007/S002510000263/METRICS. [Accessed 2023 Feb 15].
Serão, N. V. L., Kemp, R. A., Mote, B. E., Willson, P., Harding, J. C. S., Bishop, S. C., Plastow, G. S., & Dekkers, J. C. M. (2016). Genetic and genomic basis of antibody response to porcine reproductive and respiratory syndrome (PRRS) in gilts and sows. Genetics Selection Evolution, 48(1), 1–15. https://doi.org/10.1186/S12711-016-0230-0/FIGURES/4. [Accessed 2023 Feb 16].
Serão, N. V. L., Matika, O., Kemp, R. A., Harding, J. C. S., Bishop, S. C., Plastow, G. S., & Dekkers, J. C. M. (2014). Genetic analysis of reproductive traits and antibody response in a PRRS outbreak herd. Journal of Animal Science, 92(7), 2905–2921. https://doi.org/10.2527/JAS.2014-7821. [Accessed 2023 Feb 16].
Sharmaa, A., Lee, J. S., Dang, C. G., Sudrajad, P., Kim, H. C., Yeon, S. H., Kang, H. S., & Lee, S. H. (2015). Stories and challenges of genome wide association studies in livestock – A review. Asian Australasian Journal of Animal Sciences, 28(10), 1371. https://doi.org/10.5713/AJAS.14.0715. [Accessed 2022 Nov 28].
Soleimani, T., Hermesch, S., & Gilbert, H. (2021). Economic and environmental assessments of combined genetics and nutrition optimization strategies to improve the efficiency of sustainable pork production. Journal of Animal Science, 99(3), 1–14. https://doi.org/10.1093/JAS/SKAB051. [Accessed 2023 Feb 17].
Spötter, A., & Distl, O. (2006). Genetic approaches to the improvement of fertility traits in the pig. The Veterinary Journal, 172(2), 234–247. https://doi.org/10.1016/J.TVJL.2005.11.013
Stalder, K. J., Lacy, R. C., Cross, T. L., & Conatser, G. E. (2003). Financial impact of average parity of culled females in a breed-to-wean swine operation using replacement gilt net present value analysis. Journal of Swine Health and Production, 11(2), 69–74. http://www.farmdoc.uiuc.edu/marketing/livestockoutlook/0401hog_text.html [Accessed 2023 Feb 17]
St-Pierre, N. R., Cobanov, B., & Schnitkey, G. (2003). Economic losses from heat stress by US livestock industries. Journal of Dairy Science, 86(SUPPL. 1), E52–E77. https://doi.org/10.3168/JDS.S0022-0302(03)74040-5
Tait-Burkard, C., Doeschl-Wilson, A., McGrew, M. J., Archibald, A. L., Sang, H. M., Houston, R. D., Whitelaw, C. B., & Watson, M. (2018). Livestock 2.0 – Genome editing for fitter, healthier, and more productive farmed animals. Genome Biology, 19(1), 1–11. https://doi.org/10.1186/S13059-018-1583-1/TABLES/2. [Accessed 2023 Feb 13].
Tart, J. K., Johnson, R. K., Bundy, J. W., Ferdinand, N. N., McKnite, A. M., Wood, J. R., Miller, P. S., Rothschild, M. F., Spangler, M. L., Garrick, D. J., et al. (2013). Genome-wide prediction of age at puberty and reproductive longevity in sows. Animal Genetics, 44(4), 387–397. https://doi.org/10.1111/AGE.12028. [Accessed 2023 Feb 17].
Tinarelli, S., Ribani, A., Utzeri, V. J., Taurisano, V., Bovo, C., Dall’olio, S., Nen, F., Bovo, S., Schiavo, G., Gallo, M., & Fontanesi, L. (2021). Redefinition of the mora Romagnola pig breed herd book standard based on DNA markers useful to authenticate its “mono-breed” products: An example of sustainable conservation of a livestock genetic resource. Animals, 11(2), 1–16. https://doi.org/10.3390/ani11020526
Travers, A., & Muskhelishvili, G. (2015). DNA structure and function. FEBS Journal, 282(12), 2279–2295. https://doi.org/10.1111/FEBS.13307. [Accessed 2023 Feb 6].
Trevisan, L., & Brum, J. S. (2020). Incidence of pale, soft and exudative (PSE) pork meat in reason of extrinsic stress factors. An Acad Bras Cienc, 92(3), 1–9. https://doi.org/10.1590/0001-3765202020190086. [Accessed 2023 Feb 14].
VanderWaal, K., & Deen, J. (2018). Global trends in infectious diseases of swine. Proceedings of the National Academy of Sciences, 115(45), 11495–11500. https://doi.org/10.1073/PNAS.1806068115/SUPPL_FILE/PNAS.1806068115.SD01.CSV. [Accessed 2023 Feb 16].
Vögeli, P., Meijerink, E., Fries, R., Neuenschwander, S., Vorländer, N., Stranzinger, G., & Bertschinger, H. U. (1997). A molecular test for the detection of E. coli F18 receptors: a breakthrough in the struggle against edema disease and post-weaning diarrhea in swine. Schweiz Arch Tierheilkd, 139(11), 479–484. https://europepmc.org/article/med/9480539 [Accessed 2023 Feb 16]
Walker, L. R., Engle, T. B., Vu, H., Tosky, E. R., Nonneman, D. J., Smith, T. P. L., Borza, T., Burkey, T. E., Plastow, G. S., Kachman, S. D., & Ciobanu, D. C. (2018). Synaptogyrin-2 influences replication of Porcine circovirus 2. PLoS Genet, 14(10), e1007750. https://doi.org/10.1371/JOURNAL.PGEN.1007750. [Accessed 2023 Feb 16].
Whitworth, K. M., Rowland, R. R. R., Ewen, C. L., Trible, B. R., Kerrigan, M. A., Cino-Ozuna, A. G., Samuel, M. S., Lightner, J. E., McLaren, D. G., Mileham, A. J., et al. (2016). Gene-edited pigs are protected from porcine reproductive and respiratory syndrome virus. Nature Biotechnology, 34(1), 20–22. https://doi.org/10.1038/NBT.3434. [Accessed 2023 Feb 16].
Zak, L. J., Gaustad, A. H., Bolarin, A., Broekhuijse, M. L. W. J., Walling, G. A., & Knol, E. F. (2017). Genetic control of complex traits, with a focus on reproduction in pigs. Molecular Reproduction and Development, 84(9), 1004–1011. https://doi.org/10.1002/MRD.22875. [Accessed 2023 Feb 17].
Zhao, F., McParland, S., Kearney, F., Du, L., & Berry, D. P. (2015). Detection of selection signatures in dairy and beef cattle using high-density genomic information. Genetics Selection Evolution, 47(1), 1–12. https://doi.org/10.1186/S12711-015-0127-3/TABLES/4. [Accessed 2023 Feb 16].
Zumbo, A., Sutera, A. M., Tardiolo, G., & D’Alessandro, E. (2020). Sicilian black pig: An overview. Animals, 10(12), 2326. https://doi.org/10.3390/ANI10122326. [Accessed 2023 Feb 15].
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2023 The Author(s), under exclusive license to Springer Nature Switzerland AG
About this chapter
Cite this chapter
Passamonti, M.M., Negrini, R., Ajmone-Marsan, P. (2023). Genomics for Sustainable Cured Pork Supply Chain. In: Fellegara, A.M., Torelli, R., Caccialanza, A. (eds) Sustainable Transition of Meat and Cured Meat Supply Chain. CSR, Sustainability, Ethics & Governance. Springer, Cham. https://doi.org/10.1007/978-3-031-34977-5_5
Download citation
DOI: https://doi.org/10.1007/978-3-031-34977-5_5
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-031-34976-8
Online ISBN: 978-3-031-34977-5
eBook Packages: Business and ManagementBusiness and Management (R0)