Abstract
Scalar-on-image regression aims to investigate changes in a scalar response of interest based on high-dimensional imaging data. We propose a novel Bayesian nonparametric scalar-on-image regression model that utilises the spatial coordinates of the voxels to group voxels with similar effects on the response to have a common coefficient. We employ the Potts-Gibbs random partition model as the prior for the random partition in which the partition process is spatially dependent, thereby encouraging groups representing spatially contiguous regions. In addition, Bayesian shrinkage priors are utilised to identify the covariates and regions that are most relevant for the prediction. The proposed model is illustrated using the simulated data sets.
Access this chapter
Tax calculation will be finalised at checkout
Purchases are for personal use only
References
Cerquetti, A.: Generalized Chinese restaurant construction of exchangeable Gibbs partitions and related results. arXiv:0805.3853 (2008)
Craddock, R.C., Holtzheimer, P.E., III., Hu, X.P., Mayberg, H.S.: Disease state prediction from resting state functional connectivity. Magn. Reson. Med. 62(6), 1619–1628 (2009)
Davatzikos, C., Shen, D., Gur, R.C., Wu, X., Liu, D., Fan, Y., Hughett, P., Turetsky, B.I., Gur, R.E.: Whole-brain morphometric study of schizophrenia revealing a spatially complex set of focal abnormalities. Arch. Gen. Psychiatry 62(11), 1218–1227 (2005)
Debois, D., Ongena, M., Cawoy, H., De Pauw, E.: MALDI-FTICR MS imaging as a powerful tool to identify Paenibacillus antibiotics involved in the inhibition of plant pathogens. J. Am. Soc. Mass Spectrom. 24(8), 1202–1213 (2013)
Fan, Y., Resnick, S.M., Wu, X., Davatzikos, C.: Structural and functional biomarkers of prodromal Alzheimer’s disease: a high-dimensional pattern classification study. NeuroImage 41(2), 277–285 (2008)
Ferguson, T.S.: A Bayesian analysis of some nonparametric problems. Ann. Stat. 1, 209–230 (1973)
Ferwerda, B., Schedl, M., Tkalcic, M.: Using instagram picture features to predict users’ personality. In: International Conference on Multimedia Modeling. Springer (2016)
Geman, S., Geman, D.: Stochastic relaxation, Gibbs distributions, and the Bayesian restoration of images. IEEE Trans. Pattern Anal. Mach. Intell. 6, 721–741 (1984)
Gnedin, A., Pitman, J.: Exchangeable Gibbs partitions and Stirling triangles. J. Math. Sci. 138(3), 5674–5685 (2006)
Goldsmith, J., Huang, L., Crainiceanu, C.M.: Smooth scalar-on-image regression via spatial Bayesian variable selection. J. Comput. Graph Stat. 23(1), 46–64 (2014)
Gundlach-Graham, A., Burger, M., Allner, S., Schwarz, G., Wang, H.A.O., Gyr, L., Grolimund, D., Hattendorf, B., Günther, D.: High-speed, high-resolution, multielemental laser ablation-inductively coupled plasma-time-of-flight mass spectrometry imaging: Part i. instrumentation and two-dimensional imaging of geological samples. Anal. Chem. 87(16), 8250–8258 (2015)
Henderson, J.V., Storeygard, A., Weil, D.N.: Measuring economic growth from outer space. National Bureau of Economic Research, Cambridge, Mass (2009)
Hu, G., Geng, J., Xue, Y., Sang, H.: Bayesian spatial homogeneity pursuit of functional data: an application to the U.S. income distribution. arXiv:2002.06663 (2020)
Huang, L., Goldsmith, J., Reiss, P.T., Reich, D.S., Crainiceanu, C.M.: Bayesian scalar-on-image regression with application to association between intracranial DTI and cognitive outcomes. NeuroImage 83, 210–223 (2013)
Hum, N.J., Chamberlin, P.E., Hambright, B.L., Portwood, A.C., Schat, A.C., Bevan, J.L.: A picture is worth a thousand words: a content analysis of Facebook profile photographs. Comput. Hum. Behav. 27(5), 1828–1833 (2011)
Kang, J., Reich, B.J., Staicu, A.M.: Scalar-on-image regression via the soft-thresholded Gaussian process. Biometrika 105(1), 165–184 (2018)
Kim, Y., Kim, J.H.: Using computer vision techniques on instagram to link users’ personalities and genders to the features of their photos: an exploratory study. Inf. Process. Manage. 54(6), 1101–1114 (2018)
Lee, K., Cao, X.: Bayesian group selection in logistic regression with application to MRI data analysis. Biometrics 77(2), 391–400 (2021)
Li, F., Zhang, T., Wang, Q., Gonzalez, M.Z., Maresh, E.L., Coan, J.A.: Spatial Bayesian variable selection and grouping for high-dimensional scalar-on-image regression. Ann. Appl. Stat. 9(2), 687–713 (2015)
Lijoi, A., Prünster, I.: Models beyond the Dirichlet process. In: Bayesian Nonparametrics (2010)
Lü, H., Arbel, J., Forbes, F.: Bayesian nonparametric priors for hidden Markov random fields. Stat. Comput. 30(4), 1015–1035 (2020)
Maloof, K.A., Reinders, A.N., Tucker, K.R.: Applications of mass spectrometry imaging in the environmental sciences. Curr. Opin. Environ. Sci. Health. 18, 54–62 (2020)
McCullagh, P., Nelder, J.A.: Generalized linear models. Routledge (2019)
Mehrotra, S., Maity, A.: Simultaneous variable selection, clustering, and smoothing in function-on-scalar regression. Can. J, Stat (2021)
Miller, J.W., Harrison, M.T.: Mixture models with a prior on the number of components. J. Am. Stat. Assoc. 113(521), 340–356 (2018)
Naik, N., Kominers, S.D., Raskar, R., Glaeser, E.L., Hidalgo, C.A.: Computer vision uncovers predictors of physical urban change. Proc. Natl. Acad. Sci. U.S.A. 114(29), 7571–7576 (2017)
Naik, N., Raskar, R., Hidalgo, C.A.: Cities are physical too: using computer vision to measure the quality and impact of urban appearance. Am. Econ. Rev. 106(5), 128–132 (2016)
Neal, R.M.: Markov chain sampling methods for Dirichlet process mixture models. J. Comput. Graph Stat. 9(2), 249–265 (2000)
Orbanz, P., Buhmann, J.M.: Nonparametric Bayesian image segmentation. Int. J. Comput. Vis. 77(1–3), 25–45 (2007)
O’Neill, S.J.: Image matters: climate change imagery in US. UK and Australian newspapers. Geoforum 49, 10–19 (2013)
O’Neill, S.J., Boykoff, M., Niemeyer, S., Day, S.A.: On the use of imagery for climate change engagement. Glob. Environ. Change 23(2), 413–421 (2013)
Pan, T., Hu, G., Shen, W.: Identifying latent groups in spatial panel data using a Markov random field constrained product partition model. arXiv:2012.10541 (2020)
Perman, M., Pitman, J., Yor, M.: Size-biased sampling of Poisson point processes and excursions. Probab. Theory Relat. Fields 92(1), 21–39 (1992)
Pitman, J.: Some developments of the Blackwell-Macqueen urn scheme. Lect. Notes-Monograph Ser. 30, 245–267 (1996)
Pitman, J.: Lecture Notes in Mathematics. Springer (2006)
Potts, R.B., Domb, C.: Some generalized order-disorder transformations. Math. Proc. Cambridge Philos. Soc. 48(1), 106 (1952). https://doi.org/10.1017/S0305004100027419
Reiss, P., Mennes, M., Petkova, E., Huang, L., Hoptman, M., Biswal, B., Colcombe, S., Zuo, X., Milham, M.: Extracting information from functional connectivity maps via function-on-scalar regression. NeuroImage 56, 140–148 (2011)
Samany, N.N.: Automatic landmark extraction from geo-tagged social media photos using deep neural network. Cities 93, 1–12 (2019)
Shi, J., Lepore, N., Gutman, B., Thompson, P., Baxter, L., Caselli, R., Wang, Y.: Genetic influence of apolipoprotein E4 genotype on hippocampal morphometry: an N = 725 surface-based Alzheimer’s disease neuroimaging initiative study. Hum. Brain Mapp. 35(8), 3903–3918 (2014)
Smith, M., Fahrmeir, L.: Spatial Bayesian variable selection with application to functional magnetic resonance imaging. J. Am. Stat. Assoc. 102(478), 417–431 (2007)
Song, Q., Liang, F.: Nearly optimal Bayesian shrinkage for high dimensional regression. arXiv:1712.08964 (2017)
Sun, D., van Erp, T.G., Thompson, P.M., Bearden, C.E., Daley, M., Kushan, L., Hardt, M.E., Nuechterlein, K.H., Toga, A.W., Cannon, T.D.: Elucidating a magnetic resonance imaging-based neuroanatomic biomarker for psychosis: Classification analysis using probabilistic brain atlas and machine learning algorithms. Biol. Psychiatry (1969) 66(11), 1055–1060 (2009)
Swendsen, R.H., Wang, J.S.: Nonuniversal critical dynamics in Monte Carlo simulations. Phys. Rev. Lett. 58(2), 86–88 (1987)
Van Walderveen, M., Kamphorst, W., Scheltens, P., Van Waesberghe, J., Ravid, R., Valk, J., Polman, C., Barkhof, F.: Histopathologic correlate of hypointense lesions on T1-weighted spin-echo MRI in multiple sclerosis. Neurology 50(5), 1282–1288 (1998)
Wade, S., Ghahramani, Z.: Bayesian cluster analysis: Point estimation and credible balls (with discussion). Bayesian Anal. 13(2), 559–626 (2018)
Wang, X., Zhu, H., Initiative, A.D.N.: Generalized scalar-on-image regression models via total variation. J. Am. Stat. Assoc. 112(519), 1156–1168 (2017)
Xu, R.Y.D., Caron, F., Doucet, A.: Bayesian nonparametric image segmentation using a generalized Swendsen-Wang algorithm. arXiv:1602.03048 (2016)
Zhao, P., Yang, H.C., Dey, D.K., Hu, G.: Bayesian spatial homogeneity pursuit regression for count value data. arXiv:2002.06678 (2020)
Author information
Authors and Affiliations
Corresponding author
Editor information
Editors and Affiliations
Rights and permissions
Copyright information
© 2022 The Author(s), under exclusive license to Springer Nature Switzerland AG
About this paper
Cite this paper
Teo, M.S.X., Wade, S. (2022). Bayesian Nonparametric Scalar-on-Image Regression via Potts-Gibbs Random Partition Models. In: Argiento, R., Camerlenghi, F., Paganin, S. (eds) New Frontiers in Bayesian Statistics. BAYSM 2021. Springer Proceedings in Mathematics & Statistics, vol 405. Springer, Cham. https://doi.org/10.1007/978-3-031-16427-9_5
Download citation
DOI: https://doi.org/10.1007/978-3-031-16427-9_5
Published:
Publisher Name: Springer, Cham
Print ISBN: 978-3-031-16426-2
Online ISBN: 978-3-031-16427-9
eBook Packages: Mathematics and StatisticsMathematics and Statistics (R0)