Abstract
Drought is an inevitable consequence of climate change. Therefore, newer crop varieties are required which are resilient to drought stress. Though there are extensive breeding programs for numerous crops, traditional breeding process is slow. Phenotyping crops for physiological and morphological traits could be used as proxies for drought tolerance traits. However, extensive in-situ field data collection is constrained by time and resources. Remote data collection and machine learning techniques for analysis offer a high-throughput phenotyping (HTP) alternative to manual measurements that could help breeding for stress tolerance. In this chapter we would discuss recent advances and future of HTP techniques that could help in faster selection of desired genotypes. These techniques could be further extended to aid in variable rate input application such as irrigation and be a step towards precision agriculture. In this chapter we advocate for the use of newer technologies such as remote sensing, machine learning, and computer vision in plant breeding and agronomic decision making.
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References
Ahmad J, Alam D, Haseen MS (2011) Impact of climate change on agriculture and food security in India. Int J Agricult Environ Biotechnol 4(2):129–137
Araya A, Prasad P, Ciampitti I, Jha P (2021) Using crop simulation model to evaluate influence of water management practices and multiple cropping systems on crop yields: a case study for Ethiopian highlands. Field Crop Res 260:108004
Araya A, Jha PK, Zambreski Z, Faye A, Ciampitti IA, Min D, ... Prasad PVV (2022) Evaluating crop management options for sorghum, pearl millet and peanut to minimize risk under the projected midcentury climate scenario for different locations in Senegal. Clim Risk Manag 100436
Arunyanark A, Jogloy S, Akkasaeng C, Vorasoot N, Kesmala T, Nageswara Rao R, Wright G, Patanothai A (2008) Chlorophyll stability is an indicator of drought tolerance in peanut. J Agron Crop Sci 194(2):113–125
Ayyogari K, Sidhya P, Pandit MK (2014) Impact of climate change on vegetable cultivation-a review. Int J Agricult Environ Biotechnol 7(1):145
Balota M, Sarkar S (2020) Transpiration of Peanut in the field under Rainfed production. Paper presented at the American Peanut research and education society annual meeting 2020, Virtual
Balota M, Sarkar S, Cazenave A, Kumar N (2021a) Plant characteristics with significant contribution to Peanut yield under extreme weather conditions in Virginia, USA. Paper presented at the ASA, CSSA, SSSA international annual meeting, Salt Lake City, UT
Balota M, Sarkar S, Cazenave A, Burow M, Bennett R, Chamberlin K, Wang N, White M, Payton P, Mahan J (2021b) Vegetation indices enable indirect phenotyping of Peanut physiologic and agronomic characteristics. Paper presented at the American Peanut research and education society annual meeting, Virtual
Banerjee K, Krishnan P (2020) Normalized Sunlit Shaded Index (NSSI) for characterizing the moisture stress in wheat crop using classified thermal and visible images. Ecol Ind 110:105947
Basu S, Ramegowda V, Kumar A, Pereira A (2016) Plant adaptation to drought stress. F1000Research, 5
Behmann J, Schmitter P, Steinrücken J, Plümer L (2014) Ordinal classification for efficient plant stress prediction in hyperspectral data. In: International archives of the photogrammetry, remote sensing & spatial information sciences
Bell M, Wright G, Harch G (1993) Environmental and agronomic effects on the growth of four peanut cultivars in a sub-tropical environment II. Dry matter partitioning. Exp Agricult 29(4):491–501
Bendig J, Bolten A, Bareth G (2013) UAV-based imaging for multi-temporal, very high resolution crop surface models to monitor crop growth variability monitoring des Pflanzenwachstums mit Hilfe multitemporaler und hoch auflösender Oberflächenmodelle von Getreidebeständen auf Basis von Bildern aus UAV-Befliegungen. Photogrammetrie-Fernerkundung-Geoinformation 2013(6):551–562
Bennett RS, Chamberlin K, Morningweg D, Wang N, Sarkar S, Balota M, Burow M, Chagoya J, Pham H (2021) Response to drought stress in a subset of the U.S. Peanut mini-core evaluated in three states. Peanut Sci 49(1). https://doi.org/10.3146/
Bhardwaj ML (2012) Effect of climate change on vegetable production in India. In: Vegetable production under changing climate scenario, pp 1–12
Blum A (2009) Effective use of water (EUW) and not water-use efficiency (WUE) is the target of crop yield improvement under drought stress. Field Crop Res 112(2–3):119–123
Blum A (2011) Plant breeding for water-limited environments. Springer
Boonekamp PM (2012) Are plant diseases too much ignored in the climate change debate? Eur J Plant Pathol 133(1):291–294
Braga P, Crusiol LGT, Nanni MR, Caranhato ALH, Fuhrmann MB, Nepomuceno AL, ... Mertz-Henning LM (2021) Vegetation indices and NIR-SWIR spectral bands as a phenotyping tool for water status determination in soybean. Precis Agricult 22(1):249–266
Branch W, Brenneman T, Hookstra G (2014) Field test results versus marker assisted selection for root-knot nematode resistance in peanut. Peanut Sci 41(2):85–89
Burow M, Balota M, Sarkar S, Bennett R, Chamberlin K, Wang N, White M, Payton P, Mahan J, Dobreva I (2021) Field measurements, yield, and grade of the U.S. Minicore under water deficit stress. Paper presented at the American Peanut Research and Education Society Annual Meeting 2021, Virtual
Casadesús J, Villegas D (2014) Conventional digital cameras as a tool for assessing leaf area index and biomass for cereal breeding. J Integr Plant Biol 56(1):7–14
Casadesús J, Kaya Y, Bort J, Nachit MM, Araus JL, Amor S, ... Villegas D (2007) Using vegetation indices derived from conventional digital cameras as selection criteria for wheat breeding in water‐limited environments. Ann Appl Biol 150(2):227–236
Chaerle L, Van Der Straeten D (2001) Seeing is believing: imaging techniques to monitor plant health. Biochimica et Biophysica Acta (BBA)-Gene Struct Exp 1519(3):153–166
Chaerle L, De Boever F, Montagu MV, Straeten DVD (2001) Thermographic visualization of cell death in tobacco and Arabidopsis. Plant Cell Environ 24(1):15–25
Chapin FS III, Autumn K, Pugnaire F (1993) Evolution of suites of traits in response to environmental stress. Am Nat 142:S78–S92
Chapu I, Kalule DO, Okello RC, Odong TL, Sarkar S, Balota M (2022) Re-designing late leaf spot and groundnut rosette disease phenotyping in groundnut breeding in Uganda. Front Plant Sci 13. https://doi.org/10.3389/fpls.2022.912332
Chaves MM, Oliveira MM (2004) Mechanisms underlying plant resilience to water deficits: prospects for water-saving agriculture. J Exp Bot 55(407):2365–2384
Chung S-Y, Vercellotti JR, Sanders TH (1997) Increase of glycolytic enzymes in peanuts during peanut maturation and curing: evidence of anaerobic metabolism. J Agric Food Chem 45(12):4516–4521
Collino D, Dardanelli J, Sereno R, Racca R (2001) Physiological responses of argentine peanut varieties to water stress.: Light interception, radiation use efficiency and partitioning of assimilates. Field Crops Res 70(3):177–184
Comas L, Becker S, Cruz VMV, Byrne PF, Dierig DA (2013) Root traits contributing to plant productivity under drought. Front Plant Sci 4:442
Condorelli GE, Maccaferri M, Newcomb M, Andrade-Sanchez P, White JW, French AN, Sciara G, Ward R, Tuberosa R (2018) Comparative aerial and ground based high throughput phenotyping for the genetic dissection of NDVI as a proxy for drought adaptive traits in durum wheat. Front Plant Sci 9(893). https://doi.org/10.3389/fpls.2018.00893
Costa JM, Tejero IFG, Zuazo VHD, da Lima RSN, Chaves MM, Patto MCV (2015) Thermal imaging to phenotype traditional maize landraces for drought tolerance. Comunicata Scientiae 6(3):334–343
Demir N, Sönmez NK, Akar T, Ünal S (2018) Automated measurement of plant height of wheat genotypes using a DSM derived from UAV imagery. Paper presented at the multidisciplinary digital publishing institute proceedings
De Swaef T, Maes WH, Aper J, Baert J, Cougnon M, Reheul D, Steppe K, Roldán-Ruiz I, Lootens P (2021) Applying RGB- and thermal-based vegetation indices from UAVs for high-throughput field phenotyping of drought tolerance in forage grasses. Remote Sens 13(1):147. https://www.mdpi.com/2072-4292/13/1/147
Devries JD, Bennett J, Boote K, Albrecht S, Maliro C (1989a) Nitrogen accumulation and partitioning by three grain legumes in response to soil water deficits. Field Crop Res 22(1):33–44
Devries J, Bennett J, Albrecht S, Boote K (1989b) Water relations, nitrogenase activity and root development of three grain legumes in response to soil water deficits. Field Crop Res 21(3–4):215–226
Eeswaran R, Nejadhashemi AP, Kpodo J, Curtis ZK, Adhikari U, Liao H, Li S-G, Hernandez-Suarez JS, Alves FC, Raschke A (2021) Quantification of resilience metrics as affected by conservation agriculture at a watershed scale. Agr Ecosyst Environ 320:107612
El Bilali H, Callenius C, Strassner C, Probst L (2019) Food and nutrition security and sustainability transitions in food systems. Food Energy Secur 8(2):e00154
Elsayed S, Rischbeck P, Schmidhalter U (2015) Comparing the performance of active and passive reflectance sensors to assess the normalized relative canopy temperature and grain yield of drought-stressed barley cultivars. Field Crop Res 177:148–160
Falk KG, Jubery TZ, Mirnezami SV, Parmley KA, Sarkar S, Singh A, ... Singh AK (2020) Computer vision and machine learning enabled soybean root phenotyping pipeline. Plant Methods 16(1):1–19
Fonstad MA, Dietrich JT, Courville BC, Jensen JL, Carbonneau PE (2013) Topographic structure from motion: a new development in photogrammetric measurement. Earth Surf Proc Land 38(4):421–430
Freeman KW, Girma K, Arnall DB, Mullen RW, Martin KL, Teal RK, Raun WR (2007) By-plant prediction of corn forage biomass and nitrogen uptake at various growth stages using remote sensing and plant height. Agron J 99(2):530–536
Fukai S, Cooper M (1995) Development of drought-resistant cultivars using physiomorphological traits in rice. Field Crop Res 40(2):67–86
Furukawa Y, Ponce J (2010) Dense 3d motion capture from synchronized video streams. In: Image and geometry processing for 3-D cinematography. Springer, pp 193–211
Ghosal S, Zheng B, Chapman SC, Potgieter AB, Jordan DR, Wang X, Singh AK, Singh A, Hirafuji M, Ninomiya S (2019) A weakly supervised deep learning framework for sorghum head detection and counting. Plant Phenomics
Gitelson AA, Viña A, Arkebauer TJ, Rundquist DC, Keydan G, Leavitt B (2003) Remote estimation of leaf area index and green leaf biomass in maize canopies. Geophys Res Lett 30(5)
Han X, Thomasson JA, Bagnall C, Pugh NA, Horne DW, Rooney WL, Malambo L, Chang A, Jung J, Cope DA (2018) Calibrated plant height estimates with structure from motion from fixed-wing UAV images. Paper presented at the autonomous air and ground sensing systems for agricultural optimization and phenotyping III
Hasan MM, Chopin JP, Laga H, Miklavcic SJ (2018) Detection and analysis of wheat spikes using convolutional neural networks. Plant Methods 14(1):1–13
Hein NT, Ciampitti IA, Jagadish SVK (2021) Bottlenecks and opportunities in field-based high-throughput phenotyping for heat and drought stress. J Exp Bot 72(14):5102–5116. https://doi.org/10.1093/jxb/erab021
Henry A, Gowda VR, Torres RO, McNally KL, Serraj R (2011) Variation in root system architecture and drought response in rice (Oryza sativa): phenotyping of the OryzaSNP panel in rainfed lowland fields. Field Crop Res 120(2):205–214
Holman FH, Riche AB, Michalski A, Castle M, Wooster MJ, Hawkesford MJ (2016) High throughput field phenotyping of wheat plant height and growth rate in field plot trials using UAV based remote sensing. Remote Sens 8(12):1031
Huang S (2004) Global trade patterns in fruits and vegetables. USDA-ERS Agriculture and Trade Report No. WRS-04–06
Jackson RD, Idso SB, Reginato RJ, Pinter PJ Jr (1981) Canopy temperature as a crop water stress indicator. Water Resour Res 17(4):1133–1138
James MR, Robson S (2012) Straightforward reconstruction of 3D surfaces and topography with a camera: Accuracy and geoscience application. J Geophys Res: Earth Surf 117(F3):n/a–n/a. https://doi.org/10.1029/2011jf002289
Jha PK (2019) Agronomic management of corn using seasonal climate predictions, remote sensing, and crop simulation models. Michigan State University
Jha PK, Kumar SN, Ines AV (2018) Responses of soybean to water stress and supplemental irrigation in upper Indo-Gangetic plain: field experiment and modelling approach. Field Crop Res 219:76–86
Jha PK, Ines AV, Singh MP (2021) A multiple and ensembling approach for calibration and evaluation of genetic coefficients of CERES-maize to simulate maize phenology and yield in Michigan. Environ Model Softw 135:104901
Jha PK, Ines AV, Han E, Cruz R, Prasad PV (2022) A comparison of multiple calibration and ensembling methods for estimating genetic coefficients of CERES-Rice to simulate phenology and yields. Field Crop Res 284:108560
Jones HG (1999) Use of infrared thermometry for estimation of stomatal conductance as a possible aid to irrigation scheduling. Agric for Meteorol 95(3):139–149
Jones HG, Vaughan RA (2010) Remote sensing of vegetation: principles, techniques, and applications. Oxford University Press
Julia C, Dingkuhn M (2013) Predicting temperature induced sterility of rice spikelets requires simulation of crop-generated microclimate. Eur J Agron 49:50–60
Kanning M, Kühling I, Trautz D, Jarmer T (2018) High-resolution UAV-based hyperspectral imagery for LAI and chlorophyll estimations from wheat for yield prediction. Remote Sens 10(12):2000
Kar S, Purbey VK, Suradhaniwar S, Korbu LB, Kholová J, Durbha SS, ... Vadez V (2021) An ensemble machine learning approach for determination of the optimum sampling time for evapotranspiration assessment from high-throughput phenotyping data. Comput Electron Agricult 182:105992
Karaba A, Dixit S, Greco R, Aharoni A, Trijatmiko KR, Marsch-Martinez N, Krishnan A, Nataraja KN, Udayakumar M, Pereira A (2007) Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene. Proc Natl Acad Sci 104(39):15270–15275
Kefauver SC, El-Haddad G, Vergara-Diaz O, Araus JL (2015) RGB picture vegetation indexes for high-throughput phenotyping platforms (HTPPs). In: Remote sensing for agriculture, ecosystems, and hydrology XVII, vol 9637. International Society for Optics and Photonics, p 96370J
Kefauver SC, Vicente R, Vergara-Díaz O, Fernandez-Gallego JA, Kerfal S, Lopez A, ... Araus JL (2017) Comparative UAV and field phenotyping to assess yield and nitrogen use efficiency in hybrid and conventional barley. Front Plant Sci 8:1733
Khan Z, Rahimi-Eichi V, Haefele S, Garnett T, Miklavcic SJ (2018) Estimation of vegetation indices for high-throughput phenotyping of wheat using aerial imaging. Plant Methods 14(1):1–11
Kim J, Kim K-S, Kim Y, Chung YS (2020) A short review: comparisons of high-throughput phenotyping methods for detecting drought tolerance. Scientia Agricola 78
Kiniry J, Simpson C, Schubert A, Reed J (2005) Peanut leaf area index, light interception, radiation use efficiency, and harvest index at three sites in Texas. Field Crop Res 91(2–3):297–306
Kipp S, Mistele B, Schmidhalter U (2013) Identification of stay-green and early senescence phenotypes in high-yielding winter wheat, and their relationship to grain yield and grain protein concentration using high-throughput phenotyping techniques. Funct Plant Biol 41(3):227–235
Kooyers NJ (2015) The evolution of drought escape and avoidance in natural herbaceous populations. Plant Sci 234:155–162
Ladoni M, Bahrami HA, Alavipanah SK, Norouzi AA (2010) Estimating soil organic carbon from soil reflectance: a review. Precision Agric 11(1):82–99
Lazarević B, Šatović Z, Nimac A, Vidak M, Gunjača J, Politeo O, Carović-Stanko K (2021) Application of phenotyping methods in detection of drought and salinity stress in basil (Ocimum basilicum L.). Front Plant Sci 12:174
Lee K, Seong J, Han Y, Lee WH (2020) Evaluation of applicability of various color space techniques of UAV images for evaluating cool roof performance. Energies 13(16):4213
Lin H, Chen Y, Zhang H, Fu P, Fan Z (2017) Stronger cooling effects of transpiration and leaf physical traits of plants from a hot dry habitat than from a hot wet habitat. Funct Ecol 31(12):2202–2211
Lottes P, Khanna R, Pfeifer J, Siegwart R, Stachniss C (2017) UAV-based crop and weed classification for smart farming. Paper presented at the 2017 IEEE international conference on robotics and automation (ICRA)
Luis JM, Ozias-Akins P, Holbrook CC, Kemerait RC Jr, Snider JL, Liakos V (2016) Phenotyping peanut genotypes for drought tolerance. Peanut Sci 43(1):36–48
Ma L, Gardner F, Selamat A (1992) Estimation of leaf area from leaf and total mass measurements in peanut. Crop Sci 32(2):467–471
Maksimovic I, Ilin Z (2012) Effects of salinity on vegetable growth and nutrients uptake. Irrigat Syst Pract Challeng Environ 9
Mathews AJ, Jensen JL (2013) Visualizing and quantifying vineyard canopy LAI using an unmanned aerial vehicle (UAV) collected high density structure from motion point cloud. Remote Sens 5(5):2164–2183
Micheletti N, Chandler JH, Lane SN (2015a) Investigating the geomorphological potential of freely available and accessible structure-from-motion photogrammetry using a smartphone. Earth Surf Proc Land 40(4):473–486
Micheletti N, Lane SN, Chandler JH (2015b) Application of archival aerial photogrammetry to quantify climate forcing of alpine landscapes. Photogram Rec 30(150):143–165
Minaxi RP, Acharya KO, Nawale S (2011) Impact of climate change on food security. Int J Agricult Environ Biotechnol 4(2):125–127
Mishra AK, Singh VP (2010) A review of drought concepts. J Hydrol 391(1–2):202–216
Nigam S, Aruna R (2007) Improving breeding efficiency for early maturity in peanut. Plant Breeding Rev 30:295–322
Nigam S, Chandra S, Sridevi KR, Bhukta M, Reddy A, Rachaputi NR, Wright G, Reddy P, Deshmukh M, Mathur R (2005) Efficiency of physiological trait-based and empirical selection approaches for drought tolerance in groundnut. Ann Appl Biol 146(4):433–439
Nuruddin MM (2001) Effects of water stress on tomato at different growth stages
Nutter FW Jr, Littrell RH (1996) Relationships between defoliation, canopy reflectance and pod yield in the peanut-late leafspot pathosystem. Crop Prot 15(2):135–142
Oakes J, Balota M, Thomason WE, Cazenave AB, Sarkar S, Sadeghpour A (2019) Using unmanned aerial vehicles to improve n management in winter wheat. Paper presented at the ASA, CSSA, SSSA international annual meeting 2019, San Antonio, TX
Oakes J, Balota M, Thomason W, Cazenave A, Sarkar S (2020) Using UAVs to improve nitrogen management of winter wheat. In: Annual wheat newsletter, vol 66. Wheat Genetic and Genomic Resources Center at Kansas State University, p 103
Osakabe Y, Osakabe K, Shinozaki K, Tran LS (2014) Response of plants to water stress. Front Plant Sci 5:86. https://doi.org/10.3389/fpls.2014.00086
Pandey R, Herrera W, Villegas A, Pendleton J (1984) Drought response of grain legumes under irrigation gradient: III. Plant growth 1. Agron J 76(4):557–560
Parajuli R, Thoma G, Matlock MD (2019) Environmental sustainability of fruit and vegetable production supply chains in the face of climate change: a review. Sci Total Environ 650:2863–2879
Patil S, Kumar K, Jakhar DS, Rai A, Borle U, Singh P (2016) Studies on variability, heritability, genetic advance and correlation in maize (Zea mays L.). Int J Agricult Environ Biotechnol 9(6):1103–1108
Pineda M, Baron M, Perez-Bueno ML (2020) Thermal imaging for plant stress detection and phenotyping. Remote Sens 13(1):68
Prasad BVG, Chakravorty S (2015) Effects of climate change on vegetable cultivation-a review. Nat Environ Pollut Technol 14(4):923
Prashar A, Jones HG (2014) Infra-red thermography as a high-throughput tool for field phenotyping. Agronomy 4(3):397–417
Rai A, Sharma V, Heitholt J (2020) Dry bean [phaseolus vulgaris L.] growth and yield response to variable irrigation in the arid to semi-arid climate. Sustainability 12(9):3851
Rakshit A, Sarkar NC, Pathak H, Maiti RK, Makar AK, Singh PL (2009) Agriculture: a potential source of greenhouse gases and their mitigation strategies. In: IOP conference series. earth and environmental science, vol 6, no 24. IOP Publishing
Raza S-E-A, Smith HK, Clarkson GJ, Taylor G, Thompson AJ, Clarkson J, Rajpoot NM (2014) Automatic detection of regions in spinach canopies responding to soil moisture deficit using combined visible and thermal imagery. PloS One 9(6):e97612
Reddy T, Reddy V, Anbumozhi V (2003) Physiological responses of groundnut (Arachis hypogea L.) to drought stress and its amelioration: a critical review. Plant Growth Regulat 41(1):75–88
Remondino F, Spera MG, Nocerino E, Menna F, Nex F (2014) State of the art in high density image matching. Photogram Rec 29(146):144–166
Richards G, Lénia M, Mein K, Marques L, Mein K (2015) Summary for policymakers. In Stocker TF, Qin D, Plattner G-K, Tignor M, Allen SK, Boschung J, Nauels A, Xia Y, Bex V, Midgley PM (eds) Climate change 2013—the physical science basis: contribution of working group I to the fifth assessment report of the intergovernmental panel on climate change (Climate Change 2013—the physical science basis). Cambridge University Press/UNEP. https://doi.org/10.1017/CBO9781107415324.004
Romano G, Zia S, Spreer W, Sanchez C, Cairns J, Araus JL, Müller J (2011) Use of thermography for high throughput phenotyping of tropical maize adaptation in water stress. Comput Electron Agric 79(1):67–74
Rose JC, Paulus S, Kuhlmann H (2015) Accuracy analysis of a multi-view stereo approach for phenotyping of tomato plants at the organ level. Sensors 15(5):9651–9665
Rothermel M, Wenzel K, Fritsch D, Haala N (2012) SURE: photogrammetric surface reconstruction from imagery. Paper presented at the proceedings LC3D workshop, Berlin
Rutkoski J, Poland J, Mondal S, Autrique E, Pérez LG, Crossa J, ... Singh R (2016) Canopy temperature and vegetation indices from high-throughput phenotyping improve accuracy of pedigree and genomic selection for grain yield in wheat. G3: Genes Genomes Genet 6(9):2799–2808
Sadeghi-Tehran P, Sabermanesh K, Virlet N, Hawkesford MJ (2017) Automated method to determine two critical growth stages of wheat: heading and flowering. Front Plant Sci 8:252
Sadeghpour A, Oakes J, Sarkar S, Balota M (2017a) Precise Nitrogen management of biomass Sorghum using vegetation indices. Paper presented at the ASA, CSSA and SSSA international annual meetings 2017, Tampa, FL
Sadeghpour A, Oakes J, Sarkar S, Pitman R, Balota M (2017b) High throughput phenotyping of biomass sorghum using ground and aerial imaging. Paper presented at the ASA, CSSA and SSSA international annual meetings 2017, Tampa, FL
Sadeghpour A, Oakes J, Sarkar S, Balota M (2018) Seeding rate and harvesting time effect on biomass Sorghum production in Virginia. Paper presented at the ASA, CSSA and CSA international annual meetings 2018, Baltimore, MD
Sankaran S, Quirós JJ, Miklas PN (2019) Unmanned aerial system and satellite-based high resolution imagery for high-throughput phenotyping in dry bean. Comput Electron Agric 165:104965
Saravi B, Nejadhashemi AP, Jha P, Tang B (2021) Reducing deep learning network structure through variable reduction methods in crop modeling. Artif Intell Agricult 5:196–207
Sarkar S (2020) Development of high-throughput phenotyping methods and evaluation of morphological and physiological characteristics of peanut in a sub-humid environment. Virginia Polytechnic Institute and State University
Sarkar S (2021) High-throughput estimation of soil nutrient and residue cover: a step towards precision agriculture. In: Soil science: fundamentals to recent advances. Springer, Singapore, pp 581–596
Sarkar S, Jha PK (2020) Is precision agriculture worth it? Yes, may be. J Biotechnol Crop Sci 9(14):4–9
Sarkar S, Cazenave AB, Oakes J, McCall D, Thomason W, Abbot L, Balota M (2020) High-throughput measurement of peanut canopy height using digital surface models. Plant Phenome J 3(1):e20003
Sarkar S, Oakes J, Balota M (2018) High-throughput phenotyping of Peanut and biomass Sorghum using proximal sensing and aerial imaging for the mid-atlantic U.S. Paper presented at the 2018 GIS and remote sensing research symposium
Sarkar S, Oakes J, Balota M (2019) Use of proximal and remote sensing technologies for high-throughput phenotyping in peanuts. Paper presented at the advanced environmental, chemical, and biological sensing technologies XV
Sarkar S, Cazenave AB, Oakes J, McCall D, Thomason W, Abbot L, Balota M (2021a) Aerial high-throughput phenotyping of peanut leaf area index and lateral growth. Sci Rep 11(1):1–17.
Sarkar S, Ramsey AF, Cazenave A-B, Balota M (2021b) Peanut leaf wilting estimation from RGB color indices and logistic models. Front Plant Sci 12:713
Sarkar S, Shekoofa A, McClure A, Gillman JD (2022a) Phenotyping and Quantitative Trait Locus analysis for the limited transpiration trait in an upper-mid south soybean recombinant inbred line population (‘Jackson’בKS4895’): high throughput aquaporin inhibitor screening. Front Plant Sci 3175
Sarkar S, Wedegaertner K, Shekoofa A (2022b) Using aerial imagery to optimize the efficiency of PGR application in cotton. Paper presented at the Beltwide cotton conference 2022b, San Antonio, TX
Schanda J (2007) Colorimetry: understanding the CIE system. Wiley
Serraj R, Sinclair T (2002) Osmolyte accumulation: can it really help increase crop yield under drought conditions? Plant Cell Environ 25(2):333–341
Shekoofa A, Sheldon K, Sarkar S, Raper TB (2022) Variety selection: a valuable tool in the management of water relations in cotton production. Paper presented at the Beltwide cotton conference 2022, San Antonio, TX
Simko I, Jimenez-Berni JA, Sirault XR (2017) Phenomic approaches and tools for phytopathologists. Phytopathology 107(1):6–17
Singh JP, Lal SS (2010) Climate change and potato production in India. ISPRS Archives XXXVIII-8. In: W3 workshop proceedings: impact of climate change on agriculture, pp 115–117
Snavely N, Seitz SM, Szeliski R (2008) Skeletal graphs for efficient structure from motion. Paper presented at the 2008 IEEE conference on computer vision and pattern recognition
Stebbins GL Jr (1952) Aridity as a stimulus to plant evolution. Am Nat 86(826):33–44
Su W, Zhang M, Bian D, Liu Z, Huang J, Wang W, ... Guo H (2019) Phenotyping of corn plants using unmanned aerial vehicle (UAV) images. Remote Sens 11(17):2021
Sung C, Balota M, Sarkar S, Bennett R, Chamberlin K, Wang N, Payton P, Mahan J, Chagoya J, Burow M (2021) Genome-wide association study on Peanut water deficit stress tolerance using the U.S. minicore to develop improvement for breeding. Paper presented at the American Peanut research and education society annual meeting 2021, Virtual
Taiz L, Zeiger E, Møller IM, Murphy A (2015) Plant physiology and development. Sinauer Associates Incorporated
Tattaris M, Reynolds MP, Chapman SC (2016) A direct comparison of remote sensing approaches for high-throughput phenotyping in plant breeding. Front Plant Sci 7:1131
Tester M, Langridge P (2010) Breeding technologies to increase crop production in a changing world. Science 327(5967):818–822
Tian M, Ban S, Chang Q, You M, Luo D, Wang L, Wang S (2016) Use of hyperspectral images from UAV-based imaging spectroradiometer to estimate cotton leaf area index. Trans Chin Soc Agricult Eng 32(21):102–108
Travlos I, Mikroulis A, Anastasiou E, Fountas S, Bilalis D, Tsiropoulos Z, Balafoutis A (2017) The use of RGB cameras in defining crop development in legumes. Adv Anim Biosci 8(2):224–228
Trussell HJ, Saber E, Vrhel M (2005) Color image processing: Basics and special issue overview. IEEE Signal Process Mag 22(1)
Venkateswarlu B, Maheswari M, Saharan N (1989) Effects of water deficit on N2 (C2H2) fixation in cowpea and groundnut. Plant Soil 114(1):69–74
Vergara-Diaz O, Kefauver SC, Elazab A, Nieto-Taladriz MT, Araus JL (2015) Grain yield losses in yellow-rusted durum wheat estimated using digital and conventional parameters under field conditions. Crop J 3(3):200–210
Vergara-Díaz O, Zaman-Allah MA, Masuka B, Hornero A, Zarco-Tejada P, Prasanna BM, … Araus JL (2016) A novel remote sensing approach for prediction of maize yield under different conditions of nitrogen fertilization.Front Plant Sci 7:666
Vollmann J, Walter H, Sato T, Schweiger P (2011) Digital image analysis and chlorophyll metering for phenotyping the effects of nodulation in soybean. Comput Electron Agric 75(1):190–195
Wang X, Singh D, Marla S, Morris G, Poland J (2018) Field-based high-throughput phenotyping of plant height in sorghum using different sensing technologies. Plant Methods 14(1):53
Wang J, Badenhorst P, Phelan A, Pembleton L, Shi F, Cogan N, … Smith K (2019a) Using sensors and unmanned aircraft systems for high-throughput phenotyping of biomass in perennial ryegrass breeding trials. Front Plant Sci 1381
Wang X, Xuan H, Evers B, Shrestha S, Pless R, Poland J (2019b) High-throughput phenotyping with deep learning gives insight into the genetic architecture of flowering time in wheat. GigaScience 8(11):giz120
Watanabe K, Guo W, Arai K, Takanashi H, Kajiya-Kanegae H, Kobayashi M, Yano K, Tokunaga T, Fujiwara T, Tsutsumi N, Iwata H (2017) High-throughput phenotyping of sorghum plant height using an unmanned aerial vehicle and its application to genomic prediction modeling. Front Plant Sci 8(421). https://doi.org/10.3389/fpls.2017.00421
Welch E, Moorhead R, Owens JK (1991, April) Image processing using the HSI color space. In: IEEE proceedings of the SOUTHEASTCON’91. IEEE, pp 722–725
Wenting H, Yu S, Tengfei X, Xiangwei C, Ooi SK (2014) Detecting maize leaf water status by using digital RGB images. Int J Agricult Biol Eng 7(1):45–53
Westoby MJ, Brasington J, Glasser NF, Hambrey MJ, Reynolds JM (2012) ‘Structure-from-Motion’ photogrammetry: a low-cost, effective tool for geoscience applications. Geomorphology 179:300–314. https://doi.org/10.1016/j.geomorph.2012.08.021
Williams JH, Phillips TD, Jolly PE, Stiles JK, Jolly CM, Aggarwal D (2004) Human aflatoxicosis in developing countries: a review of toxicology, exposure, potential health consequences, and interventions. Am J Clin Nutr 80(5):1106–1122
Xiong X, Duan L, Liu L, Tu H, Yang P, Wu D, Chen G, Xiong L, Yang W, Liu Q (2017) Panicle-SEG: a robust image segmentation method for rice panicles in the field based on deep learning and superpixel optimization. Plant Methods 13(1):1–15
Yadav MR, Choudhary M, Singh J, Lal MK, Jha PK, Udawat P, … Prasad PV (2022) Impacts, tolerance, adaptation, and mitigation of heat stress on wheat under changing climates. Int J Mol Sci 23(5):2838
Yam KL, Papadakis SE (2004) A simple digital imaging method for measuring and analyzing color of food surfaces. J Food Eng 61(1):137–142
Yin X, McClure MA, Jaja N, Tyler DD, Hayes RM (2011) In-season prediction of corn yield using plant height under major production systems. Agron J 103(3):923–929
Yuan H, Yang G, Li C, Wang Y, Liu J, Yu H, Feng H, Xu B, Zhao X, Yang X (2017) Retrieving soybean leaf area index from unmanned aerial vehicle hyperspectral remote sensing: analysis of RF, ANN, and SVM regression models. Remote Sens 9(4):309
Yuan W, Li J, Bhatta M, Shi Y, Baenziger PS, Ge Y (2018) Wheat height estimation using LiDAR in comparison to ultrasonic sensor and UAS. Sensors 18(11):3731
Zakaluk R, Ranjan R (2008) Predicting the leaf water potential of potato plants using RGB reflectance. Canadian Biosyst Eng 50
Zhang L, Niu Y, Zhang H, Han W, Li G, Tang J, Peng X (2019) Maize canopy temperature extracted from UAV thermal and RGB imagery and its application in water stress monitoring. Front Plant Sci 10:1270
Zhou J, Zhou J, Ye H, Ali ML, Nguyen HT, Chen P (2020) Classification of soybean leaf wilting due to drought stress using UAV-based imagery. Comput Electron Agric 175:105576
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Sarkar, S., Rai, A., Jha, P.K. (2022). Remote Sensing and High-Throughput Techniques to Phenotype Crops for Drought Tolerance. In: Dubey, S.K., Jha, P.K., Gupta, P.K., Nanda, A., Gupta, V. (eds) Soil-Water, Agriculture, and Climate Change. Water Science and Technology Library, vol 113. Springer, Cham. https://doi.org/10.1007/978-3-031-12059-6_7
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