Skip to main content

Shape Spaces: From Geometry to Biological Plausibility

  • Reference work entry
  • First Online:
Handbook of Mathematical Models and Algorithms in Computer Vision and Imaging

Abstract

This chapter reviews several Riemannian metrics and evolution equations in the context of diffeomorphic shape analysis. After a short review of various approaches at building Riemannian spaces of shapes, with a special focus on the foundations of the large deformation diffeomorphic metric mapping algorithm, the attention is turned to elastic metrics and to growth models that can be derived from it. In the latter context, a new class of metrics, involving the optimization of a growth tensor, is introduced, and some of its properties are studied.

Nicolas Charon is partially supported by NSF 1945224 and NSF 1953267.

Laurent Younes is partially supported by NIH U19AG033655, R01NS102670, and R01AG055121.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 899.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Hardcover Book
USD 949.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  • Arguillere, S., Trélat, E.: Sub-Riemannian structures on groups of diffeomorphisms. J. Inst. Math. Jussieu 16(4), 745–785 (2017). Cambridge University Press

    Google Scholar 

  • Arguillère, S., Trélat, E., Trouvé, A., Younes, L.: Shape deformation and optimal control. ESAIM: Proc. Surv. 45, 300–307 (2014). EDP Sciences

    Google Scholar 

  • Arguillère, S., Trélat, E., Trouvé, A., Younes, L.: Shape deformation analysis from the optimal control viewpoint. Journal de mathématiques pures et appliquées 104(1), 139–178 (2015). Elsevier Masson

    Google Scholar 

  • Arnold, V.I.: Sur un Principe Variationnel pour les Ecoulements Stationnaires des Liquides Parfaits et ses Applications aux Problèmes de Stanbilité non linéaires. J. Mécanique 5, 29–43 (1966)

    MATH  Google Scholar 

  • Arnold, V.I.: Mathematical Methods of Classical Mechanics. Springer, New York, NY, (1978)

    Book  Google Scholar 

  • Arnold, V.I., Khesin, B.A.: Topological Methods in Hydrodynamics, vol. 125. Springer Nature, New York, NY, (2021)

    MATH  Google Scholar 

  • Aronszajn, N.: Theory of reproducing kernels. Trans. Am. Math. Soc. 68, 337–404 (1950)

    Article  MathSciNet  MATH  Google Scholar 

  • Bauer, M., Bruveris, M., Marsland, S., Michor, P.W.: Constructing reparameterization invariant metrics on spaces of plane curves. Diff. Geom. Appl. 34, 139–165 (2014a). Elsevier

    Google Scholar 

  • Bauer, M., Bruveris, M., Michor, P.W.: Overview of the geometries of shape spaces and diffeomorphism groups. J. Math. Imaging Vis. 50(1–2), 60–97 (2014b). Springer

    Google Scholar 

  • Bauer, M., Charon, N., Younes, L.: Metric registration of curves and surfaces using optimal control. In: Handbook of Numerical Analysis, vol 20, pp 613–646. Elsevier (2019)

    Google Scholar 

  • Bauer, M., Harms, P., Preston, S.C.: Vanishing distance phenomena and the geometric approach to SQG. Archive Ration. Mech. Anal. 235(3), 1445–1466 (2020). Springer

    Google Scholar 

  • Belongie, S., Malik, J., Puzicha, J.: Shape matching and object recognition using shape contexts. IEEE Trans. PAMI 24(24), 509–522 (2002)

    Article  Google Scholar 

  • Berkels, B., Effland, A., Rumpf, M.: Time discrete geodesic paths in the space of images. SIAM J. Imaging Sci. 8(3), 1457–1488 (2015). https://doi.org/10.1137/140970719

    Article  MathSciNet  MATH  Google Scholar 

  • Bressan, A., Lewicka, M.: A model of controlled growth. Archive Ration. Mech. Anal. 227(3), 1223–1266 (2018). ISSN 1432-0673

    Google Scholar 

  • Bronstein, A., Bronstein, M., Bruckstein, A., Kimmel, R.: Analysis of two-dimensional non-rigid shapes. Int. J. Comput. Vis. 78(1), 67–88 (2008a). ISSN 09205691

    Google Scholar 

  • Bronstein, A.M., Bronstein, M.M., Kimmel, R.: Numerical Geometry of Non-rigid Shapes. Springer Science & Business Media, New York, NY, (2008b)

    MATH  Google Scholar 

  • Cao, Y., Miller, M.I., Winslow, R.L., Younes, L.: Large deformation diffeomorphic metric mapping of vector fields. IEEE Trans. Med. Imaging 24(9), 1216–1230 (2005). IEEE

    Google Scholar 

  • Cao, Y., Miller, M.I., Mori, S., Winslow, R.L., Younes, L.: Diffeomorphic matching of diffusion tensor images. In: 2006 Conference on Computer Vision and Pattern Recognition Workshop (CVPRW’06), p. 67. IEEE (2006)

    Google Scholar 

  • Charon, N., Charlier, B., Glaunès, J., Gori, P., Roussillon, P.: Fidelity metrics between curves and surfaces: currents, varifolds, and normal cycles. In: Riemannian Geometric Statistics in Medical Image Analysis, pp. 441–477. Elsevier (2020)

    Google Scholar 

  • Christensen, G.E., Rabbitt, R.D., Miller, M.I.: Deformable templates using large deformation kinematics. IEEE Trans. Image Proc., 5(10), 1435–1447, (1996)

    Article  Google Scholar 

  • Ciarlet, P.G.: Three-Dimensional Elasticity, vol. 20. Elsevier (1988)

    Google Scholar 

  • Dryden, I.L., Mardia, K.V.: Statistical Shape Analysis: With Applications in R, vol. 995. Wiley (2016)

    Google Scholar 

  • Dupuis, P., Grenander, U., Miller, M.I.: Variational problems on flows of diffeomorphisms for image matching. Q. Appl. Math. LVI(4), 587–600 (1998)

    Google Scholar 

  • Ebin, D.G., Marsden, J.E.: Groups of diffeomorphisms and the motion of an incompressible fluid. Ann. Math. 92, 102–163 (1970)

    Article  MathSciNet  MATH  Google Scholar 

  • Glaunès, J., Trouvé, A., Younes, L.: Diffeomorphic matching of distributions: a new approach for unlabelled point-sets and sub-manifolds matching. In: Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2004. CVPR 2004, vol. 2, p. II. IEEE (2004)

    Google Scholar 

  • Glaunès, J., Qiu, A., Miller, M.I., Younes, L.: Large deformation diffeomorphic metric curve matching. Int. J. Comput. Vis. 80(3), 317–336 (2008)

    Article  MATH  Google Scholar 

  • Gonzalez, O., Stuart, A.M.: A First Course in Continuum Mechanics, vol. 42. Cambridge University Press (2008)

    Google Scholar 

  • Goriely, A.: The Mathematics and Mechanics of Biological Growth, vol. 45. Springer, New York, (2017)

    MATH  Google Scholar 

  • Grenander, U.: General Pattern Theory. Oxford Science Publications (1993)

    Google Scholar 

  • Grenander, U., Keenan, D.M.: On the shape of plane images. Siam J. Appl. Math. 53(4), 1072–1094 (1991)

    Article  MathSciNet  MATH  Google Scholar 

  • Grenander, U., Miller, M.I.: Computational anatomy: an emerging discipline. Q. Appl. Math. 56(4), 617–694 (1998)

    Article  MathSciNet  MATH  Google Scholar 

  • Gris, B., Durrleman, S., Trouvé, A.: A sub-Riemannian modular framework for diffeomorphism-based analysis of shape ensembles. SIAM J. Imaging Sci. 11(1), 802–833 (2018). Society for Industrial and Applied Mathematics

    Google Scholar 

  • Gu, X.D., Yau, S.-T.: Computational Conformal Geometry, vol. 1. International Press Somerville (2008)

    Google Scholar 

  • Gu, X., Wang, Y., Chan, T.F., Thompson, P.M., Yau, S.-T.: Genus surface, z. conformal mapping and its application to brain surface mapping. IEEE Trans. Med. Imaging 23(8), 949–958 (2004)

    Google Scholar 

  • Holm, D.D., Marsden, J.E., Ratiu, T.S.: The Euler–Poincaré equations and semidirect products with applications to continuum theories. Adv. Math. 137(1), 1–81 (1998)

    Article  MathSciNet  MATH  Google Scholar 

  • Hsieh, D.-N.: On model-based diffeomorphic shape evolution and diffeomorphic shape registration. PhD thesis, Johns Hopkins University (2021)

    Google Scholar 

  • Hsieh, D.-N., Arguillère, S., Charon, N., Miller, M.I., Younes, L.: A model for elastic evolution on foliated shapes. In: International Conference on Information Processing in Medical Imaging, pp. 644–655. Springer, Cham (2019)

    Google Scholar 

  • Hsieh, D.-N., Arguillère, S., Charon, N., Younes, L.: Diffeomorphic shape evolution coupled with a reaction-diffusion PDE on a growth potential. Q. Appl. Math. (2021). ISSN 0033-569X, 1552-4485. https://doi.org/10.1090/qam/1600

  • Hsieh, D.-N., Arguillère, S., Charon, N., Younes, L.: Mechanistic modeling of longitudinal shape changes: equations of motion and inverse problems. SIAM J. Appl. Dyn. Syst. 21(1), 80–101 (2022). SIAM

    Google Scholar 

  • Hytönen, T., Van Neerven, J., Veraar, M., Weis, L.: Analysis in Banach Spaces, vol. 12. Springer (2016)

    Google Scholar 

  • Jermyn, I.H., Kurtek, S., Klassen, E., Srivastava, A.: Elastic shape matching of parameterized surfaces using square root normal fields. In: European Conference on Computer Vision, pp. 804–817. Springer (2012)

    Google Scholar 

  • Kadri, H., Duflos, E., Preux, P., Canu, S., Rakotomamonjy, A., Audiffren, J.: Operator-valued kernels for learning from functional response data. J. Mach. Learn. Res. 17(20), 1–54 (2016)

    MathSciNet  MATH  Google Scholar 

  • Kaltenmark, I.: Geometrical Growth Models for Computational Anatomy. PhD thesis, Université Paris-Saclay (ComUE) (2016)

    Google Scholar 

  • Kaltenmark, I., Trouvé, A.: Estimation of a growth development with partial diffeomorphic mappings. Q. Appl. Math. 77(2), 227–267 (2019)

    Article  MathSciNet  MATH  Google Scholar 

  • Kendall, D.G.: Shape manifolds, Procrustean metrics and complex projective spaces. Bull. Lond. Math. Soc. 16, 81–121 (1984)

    Article  MATH  Google Scholar 

  • Klassen, E.P., Srivastava, A., Mio, W., Joshi, S.H.: Analysis of planar shapes using geodesic paths on shape spaces. IEEE Trans. Pattern Anal. Mach. Intell. 26(3), 372–383 (2004). ISSN 0162-8828

    Google Scholar 

  • Lacroix, L., Charlier, B., Trouvé, A., Gris, B.: IMODAL: creating learnable user-defined deformation models. In: Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, pp. 12905–12913 (2021)

    Google Scholar 

  • Lui, L.M., Zeng, W., Yau, S.-T., Gu, X.: Shape analysis of planar multiply-connected objects using conformal welding. IEEE Trans. Pattern Anal. Mach. Intell. 36(7), 1384–1401 (2014). IEEE

    Google Scholar 

  • Mémoli, F.: Gromov-Hausdorff distances in Euclidean spaces. In: CVPR Workshop on Nonrigid Shape Analysis (2008)

    Google Scholar 

  • Mémoli, F.: Gromov–wasserstein distances and the metric approach to object matching. Found. Comput. Math. 11(4), 417–487 (2011)

    Article  MathSciNet  MATH  Google Scholar 

  • Michor, P.W., Mumford, D.: Vanishing geodesic distance on spaces of submanifolds and diffeomorphisms. Doc. Math. 10, 217–245 (2005)

    Article  MathSciNet  MATH  Google Scholar 

  • Michor, P.W., Mumford, D.: An overview of the riemannian metrics on spaces of curves using the hamiltonian approach. Appl. Comput. Harmonic Anal. 23(1), 74–113 (2007)

    Article  MathSciNet  MATH  Google Scholar 

  • Miller, M.I., Younes, L.: Group actions, homeomorphisms, and matching: a general framework. Int. J. Comput. Vis. 41(1–2), 61–84 (2001). Kluwer Academic Publishers

    Google Scholar 

  • Miller, M.I., Joshi, S.C., Christensen, G.E.: Large deformation fluid diffeomorphisms for landmark and image matching. In: Toga, A. (ed.) Brain Warping, pp. 115–131. Academic Press (1999)

    Google Scholar 

  • Miller, M.I., Trouvé, A., Younes, L.: Hamiltonian systems and optimal control in computational anatomy: 100 years since D’Arcy Thompson. Annu. Rev. Biomed. Eng. 17, 447–509 (2015) Publisher: Annual Reviews.

    Google Scholar 

  • Mio, W., Srivastava, A., Joshi, S.: On shape of plane elastic curves. Int. J. Comput. Vis. 73(3), 307–324 (2007). Springer

    Google Scholar 

  • Mumford, D.B., Michor, P.W.: Riemannian geometries on spaces of plane curves. J. Eur. Math. Soc. 8(1), 1–48 (2006)

    MathSciNet  MATH  Google Scholar 

  • Needham, T., Kurtek, S.: Simplifying transforms for general elastic metrics on the space of plane curves. SIAM J. Imaging Sci. 13(1), 445–473 (2020)

    Article  MathSciNet  MATH  Google Scholar 

  • Ovsjanikov, M., Mérigot, Q., Mémoli, F., Guibas, L.: One point isometric matching with the heat kernel. In: Computer Graphics Forum, vol 29-5, pp. 1555–1564. Wiley Online Library (2010)

    Google Scholar 

  • Palais, R.S.: Foundations of Global Non-linear Analysis. Benjamin, New York (1968)

    MATH  Google Scholar 

  • Srivastava, A., Klassen, E.P.: Functional and Shape Data Analysis. Springer, New York, NY, (2016)

    Book  MATH  Google Scholar 

  • Su, Z., Bauer, M., Preston, S.C., Laga, H., Klassen, E.: Shape analysis of surfaces using general elastic metrics. J. Math. Imaging Vis. 62(8), 1087–1106 (2020)

    Article  MathSciNet  MATH  Google Scholar 

  • Thompson, D.W: On Growth and Form. Dover Publications, New York, (1917)

    Book  Google Scholar 

  • Trouvé, A.: Action de groupe de dimension infinie et reconnaissance de formes. Comptes Rendus de l’Académie des Sciences. Série I. Mathématique 321(8), 1031–1034 (1995). ISSN 0764-4442

    Google Scholar 

  • Trouvé, A.: Diffeomorphism groups and pattern matching in image analysis. Int. J. Comput. Vis. 28(3), 213–221 (1998)

    Article  Google Scholar 

  • Trouvé, A., Younes, L.: Metamorphoses through lie group action. Found. Comput. Math. 5(2), 173–198 (2005). Springer

    Google Scholar 

  • Vaillant, M., Glaunès, J.: Surface matching via currents. In: Christensen, G.E., Sonka, M. (eds.) Proceedings of Information Processing in Medical Imaging (IPMI 2005). Lecture Notes in Computer Science. Springer (2005). Issue: 3565

    Google Scholar 

  • Wirth, B., Bar, L., Rumpf, M., Sapiro, G.: A continuum mechanical approach to geodesics in shape space. Int. J. Comput. Vis. 93(3), 293–318 (2011). ISSN 1573-1405. https://doi.org/10.1007/s11263-010-0416-9

  • Younes, L.: A distance for elastic matching in object recognition. Comptes rendus de l’Académie des sciences. Série 1, Mathématique 322(2), 197–202 (1996)

    Google Scholar 

  • Younes, L.: Computable elastic distances between shapes. SIAM J. Appl. Math. 58(2), 565–586 (1998). Society for Industrial and Applied Mathematics

    Google Scholar 

  • Younes, L.: Elastic distance between curves under the metamorphosis viewpoint. arXiv preprint arXiv:1804.10155 (2018a)

    Google Scholar 

  • Younes, L.: Hybrid riemannian metrics for diffeomorphic shape registration. Ann. Math. Sci. Appl. 3(1), 189–210 (2018b)

    Article  MathSciNet  MATH  Google Scholar 

  • Younes, L.: Shapes and Diffeomorphisms. Applied Mathematical Sciences, 2nd edn. Springer, Berlin/Heidelberg (2019). ISBN 978-3-662-58495-8. https://doi.org/10.1007/978-3-662-58496-5

  • Younes, L., Michor, P.W., Shah, J., Mumford, D.: A metric on shape space with explicit geodesics. Rend. Lincei Math. Appl. 19, 25–57 (2008)

    MathSciNet  MATH  Google Scholar 

  • Younes, L., Gris, B., Trouvé, A.: Sub-Riemannian methods in shape analysis. In: Handbook of Variational Methods for Nonlinear Geometric Data, pp. 463–495. Springer, Cham (2020)

    Google Scholar 

  • Zeng, W., Gu, X.D.: Registration for 3D surfaces with large deformations using quasi-conformal curvature flow. In: 2011 IEEE Conference on Computer Vision and Pattern Recognition (CVPR), pp. 2457–2464. IEEE (2011)

    Google Scholar 

  • Zeng, W., Lui, L.M., Luo, F., Fan-Cheong Chan, T., Yau, S.-T., Gu, D.X.: Computing quasiconformal maps using an auxiliary metric and discrete curvature flow. Numer. Math. 121(4), 671–703 (2012). Springer

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Laurent Younes .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2023 Springer Nature Switzerland AG

About this entry

Check for updates. Verify currency and authenticity via CrossMark

Cite this entry

Charon, N., Younes, L. (2023). Shape Spaces: From Geometry to Biological Plausibility. In: Chen, K., Schönlieb, CB., Tai, XC., Younes, L. (eds) Handbook of Mathematical Models and Algorithms in Computer Vision and Imaging. Springer, Cham. https://doi.org/10.1007/978-3-030-98661-2_118

Download citation

Publish with us

Policies and ethics