Abstract
Alzheimer’s disease (AD) is the most common age-related dementia, which significantly affects an individual’s daily life and impact socioeconomics. It remains a challenge to identify the individuals at risk of dementia for precise management. Brain MRI offers a non-invasive biomarker to detect brain aging. Previous evidence shows that the structural brain network generated from the diffusion MRI promises to classify dementia accurately based on deep learning models. However, the limited availability of diffusion MRI challenges the model training of deep learning. We propose the BrainNetGAN, a variant of the generative adversarial network, to efficiently augment the structural brain networks for dementia classifying tasks. The BrainNetGAN model is trained to generate fake brain connectivity matrices, which are expected to reflect the latent distribution and topological features of the real brain network data. Numerical results show that the BrainNetGAN outperforms the benchmarking algorithms in augmenting the brain networks for AD classification tasks.
C. Li and Y. Wei—Equal Contribution.
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Ahmed, M.R., Zhang, Y., Feng, Z., Lo, B., Inan, O.T., Liao, H.: Neuroimaging and machine learning for dementia diagnosis: recent advancements and future prospects. IEEE Rev. Biomed. Eng. 12, 19–33 (2018)
Ajilore, O., Lamar, M., Kumar, A.: Association of brain network efficiency with aging, depression, and cognition. Am. J. Geriatr. Psychiatry 22(2), 102–110 (2014)
Antoniou, A., Storkey, A., Edwards, H.: Data augmentation generative adversarial networks. arXiv preprint arXiv:1711.04340 (2017)
Avants, B.B., Tustison, N., Song, G.: Advanced normalization tools (ants). Insight j 2(365), 1–35 (2009)
Chawla, N.V., Bowyer, K.W., Hall, L.O., Kegelmeyer, W.P.: Smote: synthetic minority over-sampling technique. J. Artif. Intell. Res. 16, 321–357 (2002)
Fey, M., Lenssen, J.E.: Fast graph representation learning with PyTorch geometric. In: ICLR Workshop on Representation Learning on Graphs and Manifolds (2019)
Goodfellow, I.J., et al.: Generative adversarial networks. arXiv preprint arXiv:1406.2661 (2014)
Griffa, A., Baumann, P.S., Thiran, J.P., Hagmann, P.: Structural connectomics in brain diseases. Neuroimage 80, 515–526 (2013)
Gulrajani, I., Ahmed, F., Arjovsky, M., Dumoulin, V., Courville, A.: Improved training of Wasserstein GANs. arXiv preprint arXiv:1704.00028 (2017)
He, H., Bai, Y., Garcia, E.A., Li, S.: ADASYN: adaptive synthetic sampling approach for imbalanced learning. In: 2008 IEEE International Joint Conference on Neural Networks (IEEE World Congress On Computational Intelligence), pp. 1322–1328. IEEE (2008)
Kawahara, J., et al.: BrainNetCNN: convolutional neural networks for brain networks; towards predicting neurodevelopment. Neuroimage 146, 1038–1049 (2017)
Lemaître, G., Nogueira, F., Aridas, C.K.: Imbalanced-learn: a python toolbox to tackle the curse of imbalanced datasets in machine learning. J. Mach. Learn. Res. 18(17), 1–5 (2017). http://jmlr.org/papers/v18/16-365
Mattson, M.P.: Pathways towards and away from Alzheimer’s disease. Nature 430(7000), 631–639 (2004)
Mori, S., Crain, B.J., Chacko, V.P., Van Zijl, P.C.: Three-dimensional tracking of axonal projections in the brain by magnetic resonance imaging. Ann. Neurol.: Off. J. Am. Neurol. Assoc. Child Neurol. Soc. 45(2), 265–269 (1999)
Morris, C., Ritzert, M., Fey, M., Hamilton, W.L., Lenssen, J.E., Rattan, G., Grohe, M.: Weisfeiler and leman go neural: higher-order graph neural networks. In: Proceedings of the AAAI Conference on Artificial Intelligence, vol. 33, pp. 4602–4609 (2019)
Rubinov, M., Sporns, O.: Complex network measures of brain connectivity: uses and interpretations. Neuroimage 52(3), 1059–1069 (2010)
Song, T.A., et al.: Graph convolutional neural networks for Alzheimer’s disease classification. In: 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019), pp. 414–417. IEEE (2019)
Tzourio-Mazoyer, N., et al.: Automated anatomical labeling of activations in SPM using a macroscopic anatomical parcellation of the MNI MRI single-subject brain. Neuroimage 15(1), 273–289 (2002)
Wei, Y., Li, C., Price, S.: Quantifying structural connectivity in brain tumor patients. medRxiv (2021)
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Li, C., Wei, Y., Chen, X., Schönlieb, CB. (2021). BrainNetGAN: Data Augmentation of Brain Connectivity Using Generative Adversarial Network for Dementia Classification. In: Engelhardt, S., et al. Deep Generative Models, and Data Augmentation, Labelling, and Imperfections. DGM4MICCAI DALI 2021 2021. Lecture Notes in Computer Science(), vol 13003. Springer, Cham. https://doi.org/10.1007/978-3-030-88210-5_9
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DOI: https://doi.org/10.1007/978-3-030-88210-5_9
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