Abstract
Histones can be methylated on both lysine (K) and arginine (R) residues. Histone arginine methylation is a prevalent post-translational modification catalyzed by protein arginine methyltransferases (PRMTs). As an epigenetic modification, histone arginine methylation is associated with signal transduction, cell differentiation, cellular metabolism, tissue homeostasis, immune and inflammatory responses etc. Methylation at arginine residues alters the properties of the nucleosome to regulate gene transcription and the interaction between nucleosome and other regulatory proteins. Histone arginine methylation results in either transcriptional repression or activation. This review focuses on the biochemistry, regulatory mechanism, and the functional significance of histone arginine methylation.
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References
Abeywardana T, Oh M, Jiang L et al (2018) CARM1 suppresses de novo serine synthesis by promoting PKM2 activity. J Biol Chem 293:15290–15303
Akahoshi A, Suzue Y, Kitamatsu M et al (2011) Site-specific incorporation of arginine analogs into proteins using arginyl-tRNA synthetase. Biochem Biophys Res Commun 414:625–630
An W, Kim J, Roeder RG (2004) Ordered cooperative functions of PRMT1, p300, and CARM1 in transcriptional activation by p53. Cell 117:735–748
Bandyopadhyay S, Harris DP, Adams GN et al (2012) HOXA9 methylation by PRMT5 is essential for endothelial cell expression of leukocyte adhesion molecules. Mol Cell Biol 32:1202–1213
Bedford MT, Clarke SG (2009) Protein arginine methylation in mammals: who, what, and why. Mol Cell 33:1–13
Blanc RS, Vogel G, Chen T et al (2016) PRMT7 preserves satellite cell regenerative capacity. Cell Rep 14:1528–1539
Blanc RS, Vogel G, Li X et al (2017) Arginine methylation by PRMT1 regulates muscle stem cell fate. Mol Cell Biol 37:e00457-16
Bode-Boger SM, Scalera F, Kielstein JT et al (2006) Symmetrical dimethylarginine: a new combined parameter for renal function and extent of coronary artery disease. J Am Soc Nephrol 17:1128–1134
Bouras G, Deftereos S, Tousoulis D et al (2013) Asymmetric dimethylarginine (ADMA): a promising biomarker for cardiovascular disease? Curr Top Med Chem 13:180–200
Casadio F, Lu X, Pollock SB et al (2013) H3R42me2a is a histone modification with positive transcriptional effects. Proc Natl Acad Sci USA 110:14894–14899
Cesaro E, De Cegli R, Medugno L et al (2009) The Kruppel-like zinc finger protein ZNF224 recruits the arginine methyltransferase PRMT5 on the transcriptional repressor complex of the aldolase A gene. J Biol Chem 284:32321–32330
Cheung N, Chan LC, Thompson A et al (2007) Protein arginine-methyltransferase-dependent oncogenesis. Nat Cell Biol 9:1208–1215
Chin JW (2017) Expanding and reprogramming the genetic code. Nature 550:53–60
Covic M, Hassa PO, Saccani S et al (2005) Arginine methyltransferase CARM1 is a promoter-specific regulator of NF-kappaB-dependent gene expression. EMBO J 24:85–96
Dacwag CS, Bedford MT, Sif S et al (2009) Distinct protein arginine methyltransferases promote ATP-dependent chromatin remodeling function at different stages of skeletal muscle differentiation. Mol Cell Biol 29:1909–1921
Damez-Werno DM, Sun H, Scobie KN et al (2016) Histone arginine methylation in cocaine action in the nucleus accumbens. Proc Natl Acad Sci USA 113:9623–9628
Dhar SS, Lee SH, Kan PY et al (2012) Trans-tail regulation of MLL4-catalyzed H3K4 methylation by H4R3 symmetric dimethylation is mediated by a tandem PHD of MLL4. Genes Dev 26:2749–2762
Di Lorenzo A, Yang Y, Macaluso M et al (2014) A gain-of-function mouse model identifies PRMT6 as a NF-kappaB coactivator. Nucleic Acids Res 42:8297–8309
Dong F, Li Q, Yang C et al (2018) PRMT2 links histone H3R8 asymmetric dimethylation to oncogenic activation and tumorigenesis of glioblastoma. Nat Commun 9:4552
Elakoum R, Gauchotte G, Oussalah A et al (2014) CARM1 and PRMT1 are dysregulated in lung cancer without hierarchical features. Biochimie 97:210–218
Esse R, Florindo C, Imbard A et al (2013) Global protein and histone arginine methylation are affected in a tissue-specific manner in a rat model of diet-induced hyperhomocysteinemia. Biochim Biophys Acta 1832:1708–1714
Feng Y, Maity R, Whitelegge JP et al (2013) Mammalian protein arginine methyltransferase 7 (PRMT7) specifically targets RXR sites in lysine- and arginine-rich regions. J Biol Chem 288:37010–37025
Ferreira de Freitas R, Eram MS, Szewczyk MM et al (2016) Discovery of a potent class I protein arginine methyltransferase fragment inhibitor. J Med Chem 59:1176–1183
Ganesh L, Yoshimoto T, Moorthy NC et al (2006) Protein methyltransferase 2 inhibits NF-kappaB function and promotes apoptosis. Mol Cell Biol 26:3864–3874
Garcia MM, Gueant-Rodriguez RM, Pooya S et al (2011) Methyl donor deficiency induces cardiomyopathy through altered methylation/acetylation of PGC-1alpha by PRMT1 and SIRT1. J Pathol 225:324–335
Greenblatt SM, Man N, Hamard PJ et al (2018) CARM1 is essential for myeloid leukemogenesis but dispensable for normal hematopoiesis. Cancer Cell 33:1111–1127.e5
Guccione E, Bassi C, Casadio F et al (2007) Methylation of histone H3R2 by PRMT6 and H3K4 by an MLL complex are mutually exclusive. Nature 449:933–937
Han HS, Jung CY, Yoon YS et al (2014) Arginine methylation of CRTC2 is critical in the transcriptional control of hepatic glucose metabolism. Sci Signal 7:ra19
Harrison MJ, Tang YH, Dowhan DH (2010) Protein arginine methyltransferase 6 regulates multiple aspects of gene expression. Nucleic Acids Res 38:2201–2216
Hashimoto M, Murata K, Ishida J et al (2016) Severe hypomyelination and developmental defects are caused in mice lacking protein arginine methyltransferase 1 (PRMT1) in the central nervous system. J Biol Chem 291:2237–2245
Hassa PO, Covic M, Bedford MT et al (2008) Protein arginine methyltransferase 1 coactivates NF-kappaB-dependent gene expression synergistically with CARM1 and PARP1. J Mol Biol 377:668–678
Hatanaka Y, Tsusaka T, Shimizu N et al (2017) Histone H3 methylated at arginine 17 is essential for reprogramming the paternal genome in zygotes. Cell Rep 20:2756–2765
Hou W, Nemitz S, Schopper S et al (2018) Arginine methylation by PRMT2 controls the functions of the actin nucleator cobl. Dev Cell 45:262–275 e268
Hu H, Qian K, Ho MC et al (2016) Small molecule inhibitors of protein arginine methyltransferases. Expert Opin Investig Drugs 25:335–358
Huang S, Litt M, Felsenfeld G (2005) Methylation of histone H4 by arginine methyltransferase PRMT1 is essential in vivo for many subsequent histone modifications. Genes Dev 19:1885–1893
Huang J, Vogel G, Yu Z et al (2011) Type II arginine methyltransferase PRMT5 regulates gene expression of inhibitors of differentiation/DNA binding Id2 and Id4 during glial cell differentiation. J Biol Chem 286:44424–44432
Iderzorig T, Kellen J, Osude C et al (2018) Comparison of EMT mediated tyrosine kinase inhibitor resistance in NSCLC. Biochem Biophys Res Commun 496:770–777
Ikenaka K, Miyata S, Mori Y et al (2006) Immunohistochemical and western analyses of protein arginine N-methyltransferase 3 in the mouse brain. Neuroscience 141:1971–1982
Infantino S, Light A, O'Donnell K et al (2017) Arginine methylation catalyzed by PRMT1 is required for B cell activation and differentiation. Nat Commun 8:891
Inoue M, Okamoto K, Terashima A et al (2018) Arginine methylation controls the strength of gammac-family cytokine signaling in T cell maintenance. Nat Immunol 19:1265–1276
Iwasaki H, Kovacic JC, Olive M et al (2010) Disruption of protein arginine N-methyltransferase 2 regulates leptin signaling and produces leanness in vivo through loss of STAT3 methylation. Circ Res 107:992–1001
James LI, Beaver JE, Rice NW et al (2013) A synthetic receptor for asymmetric dimethyl arginine. J Am Chem Soc 135:6450–6455
Jin Y, Zhou J, Xu F et al (2016) Targeting methyltransferase PRMT5 eliminates leukemia stem cells in chronic myelogenous leukemia. J Clin Invest 126:3961–3980
Karkhanis V, Wang L, Tae S et al (2012) Protein arginine methyltransferase 7 regulates cellular response to DNA damage by methylating promoter histones H2A and H4 of the polymerase delta catalytic subunit gene, POLD1. J Biol Chem 287:29801–29814
Kawabe Y, Wang YX, McKinnell IW et al (2012) Carm1 regulates Pax7 transcriptional activity through MLL1/2 recruitment during asymmetric satellite stem cell divisions. Cell Stem Cell 11:333–345
Kim JD, Park KE, Ishida J et al (2015) PRMT8 as a phospholipase regulates Purkinje cell dendritic arborization and motor coordination. Sci Adv 1:e1500615
Krapivinsky G, Krapivinsky L, Renthal NE et al (2017) Histone phosphorylation by TRPM6’s cleaved kinase attenuates adjacent arginine methylation to regulate gene expression. Proc Natl Acad Sci USA 114:E7092–E7100
LeBlanc SE, Konda S, Wu Q et al (2012) Protein arginine methyltransferase 5 (Prmt5) promotes gene expression of peroxisome proliferator-activated receptor gamma2 (PPARgamma2) and its target genes during adipogenesis. Mol Endocrinol 26:583–597
Lee WC, Lin WL, Matsui T et al (2015) Protein arginine methyltransferase 8: tetrameric structure and protein substrate specificity. Biochemistry 54:7514–7523
Li J, Zhao Z, Carter C et al (2013) Coactivator-associated arginine methyltransferase 1 regulates fetal hematopoiesis and thymocyte development. J Immunol 190:597–604
Li S, Ali S, Duan X et al (2018) JMJD1B demethylates H4R3me2s and H3K9me2 to facilitate gene expression for development of hematopoietic stem and progenitor cells. Cell Rep 23:389–403
Liu F, Cheng G, Hamard PJ et al (2015) Arginine methyltransferase PRMT5 is essential for sustaining normal adult hematopoiesis. J Clin Invest 125:3532–3544
Liu F, Ma F, Wang Y et al (2017) PKM2 methylation by CARM1 activates aerobic glycolysis to promote tumorigenesis. Nat Cell Biol 19:1358–1370
Madreiter-Sokolowski CT, Klec C, Parichatikanond W et al (2016) PRMT1-mediated methylation of MICU1 determines the UCP2/3 dependency of mitochondrial Ca(2+) uptake in immortalized cells. Nat Commun 7:12897
Mitchell LH, Drew AE, Ribich SA et al (2015) Aryl pyrazoles as potent inhibitors of arginine methyltransferases: identification of the first PRMT6 tool compound. ACS Med Chem Lett 6:655–659
Mizutani S, Yoshida T, Zhao X et al (2015) Loss of RUNX1/AML1 arginine-methylation impairs peripheral T cell homeostasis. Br J Haematol 170:859–873
Neault M, Mallette FA, Vogel G et al (2012) Ablation of PRMT6 reveals a role as a negative transcriptional regulator of the p53 tumor suppressor. Nucleic Acids Res 40:9513–9521
Pal S, Vishwanath SN, Erdjument-Bromage H et al (2004) Human SWI/SNF-associated PRMT5 methylates histone H3 arginine 8 and negatively regulates expression of ST7 and NM23 tumor suppressor genes. Mol Cell Biol 24:9630–9645
Quan X, Yue W, Luo Y et al (2015) The protein arginine methyltransferase PRMT5 regulates Abeta-induced toxicity in human cells and Caenorhabditis elegans models of Alzheimer’s disease. J Neurochem 134:969–977
Ramon-Maiques S, Kuo AJ, Carney D et al (2007) The plant homeodomain finger of RAG2 recognizes histone H3 methylated at both lysine-4 and arginine-2. Proc Natl Acad Sci USA 104:18993–18998
Ratovitski T, Arbez N, Stewart JC et al (2015) PRMT5-mediated symmetric arginine dimethylation is attenuated by mutant huntingtin and is impaired in Huntington’s disease (HD). Cell Cycle 14:1716–1729
Rhein VF, Carroll J, Ding S et al (2013) NDUFAF7 methylates arginine 85 in the NDUFS2 subunit of human complex I. J Biol Chem 288:33016–33026
Sanchez SE, Petrillo E, Beckwith EJ et al (2010) A methyl transferase links the circadian clock to the regulation of alternative splicing. Nature 468:112–116
Selvi BR, Batta K, Kishore AH et al (2010) Identification of a novel inhibitor of coactivator-associated arginine methyltransferase 1 (CARM1)-mediated methylation of histone H3 Arg-17. J Biol Chem 285:7143–7152
Sha L, Daitoku H, Araoi S et al (2017) Asymmetric arginine dimethylation modulates mitochondrial energy metabolism and homeostasis in Caenorhabditis elegans. Mol Cell Biol 37:e00504-16
Shin HJ, Kim H, Oh S et al (2016) AMPK-SKP2-CARM1 signalling cascade in transcriptional regulation of autophagy. Nature 534:553–557
Simandi Z, Czipa E, Horvath A et al (2015) PRMT1 and PRMT8 regulate retinoic acid-dependent neuronal differentiation with implications to neuropathology. Stem Cells 33:726–741
Suchankova J, Legartova S, Sehnalova P et al (2014) PRMT1 arginine methyltransferase accumulates in cytoplasmic bodies that respond to selective inhibition and DNA damage. Eur J Histochem 58:2389
Sun Q, Liu L, Roth M et al (2015) PRMT1 upregulated by epithelial proinflammatory cytokines participates in COX2 expression in fibroblasts and chronic antigen-induced pulmonary inflammation. J Immunol 195:298–306
Swiercz R, Person MD, Bedford MT (2005) Ribosomal protein S2 is a substrate for mammalian PRMT3 (protein arginine methyltransferase 3). Biochem J 386:85–91
Swiercz R, Cheng D, Kim D et al (2007) Ribosomal protein rpS2 is hypomethylated in PRMT3-deficient mice. J Biol Chem 282:16917–16923
Tanaka H, Hoshikawa Y, Oh-hara T et al (2009) PRMT5, a novel TRAIL receptor-binding protein, inhibits TRAIL-induced apoptosis via nuclear factor-kappaB activation. Mol Cancer Res 7:557–569
Tikhanovich I, Zhao J, Olson J et al (2017) Protein arginine methyltransferase 1 modulates innate immune responses through regulation of peroxisome proliferator-activated receptor gamma-dependent macrophage differentiation. J Biol Chem 292:6882–6894
Tsai WW, Niessen S, Goebel N et al (2013) PRMT5 modulates the metabolic response to fasting signals. Proc Natl Acad Sci USA 110:8870–8875
Tsukada Y, Zhang Y (2006) Purification of histone demethylases from HeLa cells. Methods 40:318–326
Verma M, Charles RCM, Chakrapani B et al (2017) PRMT7 interacts with ASS1 and Citrullinemia mutations disrupt the interaction. J Mol Biol 429:2278–2289
Waldmann T, Izzo A, Kamieniarz K et al (2011) Methylation of H2AR29 is a novel repressive PRMT6 target. Epigenetics Chromatin 4:11
Wang YP, Lei QY (2017) Perspectives of reprogramming breast cancer metabolism. Adv Exp Med Biol 1026:217–232
Wang YP, Lei QY (2018) Metabolic recoding of epigenetics in cancer. Cancer Commun (Lond) 38:25
Wang SC, Dowhan DH, Eriksson NA et al (2012) CARM1/PRMT4 is necessary for the glycogen gene expression programme in skeletal muscle cells. Biochem J 444:323–331
Wang L, Zhao Z, Meyer MB et al (2014) CARM1 methylates chromatin remodeling factor BAF155 to enhance tumor progression and metastasis. Cancer Cell 25:21–36
Wang Y, Xiao M, Chen X et al (2015) WT1 recruits TET2 to regulate its target gene expression and suppress leukemia cell proliferation. Mol Cell 57:662–673
Wang YP, Zhou W, Wang J et al (2016) Arginine methylation of MDH1 by CARM1 inhibits glutamine metabolism and suppresses pancreatic cancer. Mol Cell 64:673–687
Yadav N, Cheng D, Richard S et al (2008) CARM1 promotes adipocyte differentiation by coactivating PPARgamma. EMBO Rep 9:193–198
Yamamoto T, Takano N, Ishiwata K et al (2014) Reduced methylation of PFKFB3 in cancer cells shunts glucose towards the pentose phosphate pathway. Nat Commun 5:3480
Yang Y, Lu Y, Espejo A et al (2010) TDRD3 is an effector molecule for arginine-methylated histone marks. Mol Cell 40:1016–1023
Ying Z, Mei M, Zhang P et al (2015) Histone arginine methylation by PRMT7 controls germinal center formation via regulating Bcl6 transcription. J Immunol 195:1538–1547
Young BD, Weiss DI, Zurita-Lopez CI et al (2012) Identification of methylated proteins in the yeast small ribosomal subunit: a role for SPOUT methyltransferases in protein arginine methylation. Biochemistry 51:5091–5104
Zhao Q, Rank G, Tan YT et al (2009) PRMT5-mediated methylation of histone H4R3 recruits DNMT3A, coupling histone and DNA methylation in gene silencing. Nat Struct Mol Biol 16:304–311
Zhong X, Yuan XM, Xu YY et al (2018) CARM1 methylates GAPDH to regulate glucose metabolism and is suppressed in liver cancer. Cell Rep 24:3207–3223
Zou L, Zhang H, Du C et al (2012) Correlation of SRSF1 and PRMT1 expression with clinical status of pediatric acute lymphoblastic leukemia. J Hematol Oncol 5:42
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Wang, TS., Cheng, JK., Lei, QY., Wang, YP. (2019). A Switch for Transcriptional Activation and Repression: Histone Arginine Methylation. In: Jurga, S., Barciszewski, J. (eds) The DNA, RNA, and Histone Methylomes. RNA Technologies. Springer, Cham. https://doi.org/10.1007/978-3-030-14792-1_21
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