Skip to main content

Isolation of Exosome-Like Vesicles from Plants by Ultracentrifugation on Sucrose/Deuterium Oxide (D2O) Density Cushions

  • Protocol
  • First Online:

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1459))

Abstract

Exosomes are nanovesicles of endocytic origin that are about 30–100 nm in diameter, surrounded by a lipid bilayer membrane, and contain proteins, nucleic acids, and other molecules. Mammalian cells- and biological fluids-derived exosomes have become the subject for a wide range of investigations in biological and biomedical sciences. More recently, a new interest is on the verge of rising: the presence of nanovesicles in plants. Lipoprotein vesicles from apoplastic fluid and exosome-like vesicles (ELVs) from fruit juice have been isolated and shown that they could be loaded with drugs and uptaken by recipient cells. In order to explore and analyze the contents and functions of ELVs, they must be isolated and purified with intense care. Isolation of ELVs can be a tedious process and often characterized by the co-purification of undesired contaminants. Here we describe a method which isolates ELVs based on their buoyant density. The method utilizes differential centrifugation in step 1 and 1 and 2 M sucrose/deuterium oxide double-cushion ultracentrifugation in step 2, to purify two diverse ELV subpopulations. In this method fruit juice is used as an example of starting material, although this protocol can be used for the isolation of vesicles from apoplastic fluid too. The quality and the quantity of ELV preparations have been found appropriate for downstream biological and structural studies, like proteomics, transcriptomics, and lipidomics.

This is a preview of subscription content, log in via an institution.

Buying options

eBook
USD   39.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   54.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   54.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. Yáñez-Mó M, Siljander PR-M, Andreu Z, Zavec AB, Borràs FE, Buzas EI, Buzas K, Casal E, Cappello F, Carvalho J, Colás E, Cordeiro-da Silva A, Fais S, Falcon-Perez JM, Ghobrial IM, Giebel B, Gimona M, Graner M, Gursel I, Gursel M, Heegaard NHH, Hendrix A, Kierulf P, Kokubun K, Kosanovic M, Kralj-Iglic V, Krämer-Albers E-M, Laitinen S, Lässer C, Lener T, Ligeti E, Linē A, Lipps G, Llorente A, Lötvall J, Manček-Keber M, Marcilla A, Mittelbrunn M, Nazarenko I, Nolte-‘t Hoen ENM, Nyman TA, Driscoll L, Olivan M, Oliveira C, Pállinger É, del Portillo HA, Reventós J, Rigau M, Rohde E, Sammar M, Sánchez-Madrid F, Santarém N, Schallmoser K, Stampe Ostenfeld M, Stoorvogel W, Stukelj R, Van der Grein SG, Vasconcelos MH, Wauben MHM, De Wever O (2015) Biological properties of extracellular vesicles and their physiological functions. Journal of Extracellular Vesicles 4. doi:10.3402/jev.v4.27066

    Google Scholar 

  2. Yoon YJ, Kim OY, Gho YS (2014) Extracellular vesicles as emerging intercellular communicasomes. BMB Rep 47(10):531–539. doi:10.5483/BMBRep.2014.47.10.164

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Regente M, Pinedo M, Elizalde M, de la Canal L (2012) Apoplastic exosome-like vesicles: a new way of protein secretion in plants? Plant Signal Behav 7(5):544–546

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  4. Song Y, Zhang C, Ge W, Zhang Y, Burlingame AL, Guo Y (2011) Identification of NaCl stress-responsive apoplastic proteins in rice shoot stems by 2D-DIGE. J Proteomics 74(7):1045–1067

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Regente M, Corti-Monzón G, Maldonado AM, Pinedo M, Jorrín J, de la Canal L (2009) Vesicular fractions of sunflower apoplastic fluids are associated with potential exosome marker proteins. FEBS Lett 583(20):3363–3366. doi:10.1016/j.febslet.2009.09.041

    Article  CAS  PubMed  Google Scholar 

  6. Gonorazky G, Laxalt AM, Dekker HL, Rep M, Munnik T, Testerink C, de la Canal L (2012) Phosphatidylinositol 4-phosphate is associated to extracellular lipoproteic fractions and is detected in tomato apoplastic fluids. Plant Biol 14(1):41–49. doi:10.1111/j.1438-8677.2011.00488.x

    CAS  PubMed  Google Scholar 

  7. Ju S, Mu J, Dokland T, Zhuang X, Wang Q, Jiang H, Xiang X, Deng ZB, Wang B, Zhang L, Roth M, Welti R, Mobley J, Jun Y, Miller D, Zhang HG (2013) Grape exosome-like nanoparticles induce intestinal stem cells and protect mice from DSS-induced colitis. Mol Ther 21(7):1345–1357

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  8. Wang Q, Zhuang X, Mu J, Deng Z-B, Jiang H, Zhang L, Xiang X, Wang B, Yan J, Miller D, Zhang H-G (2013) Delivery of therapeutic agents by nanoparticles made of grapefruit-derived lipids. Nat Commun 4:1867. doi:10.1038/ncomms2886

    Article  PubMed  PubMed Central  Google Scholar 

  9. Reyes FC, Buono R, Otegui MS (2011) Plant endosomal trafficking pathways. Curr Opin Plant Biol 14(6):666–673. doi:10.1016/j.pbi.2011.07.009

    Article  CAS  PubMed  Google Scholar 

  10. An Q, van Bel AJ, Huckelhoven R (2007) Do plant cells secrete exosomes derived from multivesicular bodies? Plant Signal Behav 2(1):4–7

    Article  PubMed  PubMed Central  Google Scholar 

  11. Pocsfalvi G, Raj DAA, Fiume I, Vilasi A, Trepiccione F, Capasso G (2015) Urinary extracellular vesicles as reservoirs of altered proteins during the pathogenesis of polycystic kidney disease. Proteomics Clin Appl 9(5-6):552–567. doi:10.1002/prca.201400199

    Article  CAS  PubMed  Google Scholar 

  12. Raj DA, Fiume I, Capasso G, Pocsfalvi G (2012) A multiplex quantitative proteomics strategy for protein biomarker studies in urinary exosomes. Kidney Int 81(12):1263–1272. doi:10.1038/ki.2012.25

    Article  CAS  PubMed  Google Scholar 

  13. Joosten MAJ (2012) Isolation of apoplastic fluid from leaf tissue by the vacuum infiltration-centrifugation technique. In: Bolton MD, Thomma BPHJ (eds) Plant fungal pathogens, vol 835, Methods in molecular biology. Humana, New York, NY, pp 603–610. doi:10.1007/978-1-61779-501-5_38

    Chapter  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Gabriella Pocsfalvi .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2016 Springer Science+Business Media New York

About this protocol

Cite this protocol

Stanly, C., Fiume, I., Capasso, G., Pocsfalvi, G. (2016). Isolation of Exosome-Like Vesicles from Plants by Ultracentrifugation on Sucrose/Deuterium Oxide (D2O) Density Cushions. In: Pompa, A., De Marchis, F. (eds) Unconventional Protein Secretion. Methods in Molecular Biology, vol 1459. Humana Press, New York, NY. https://doi.org/10.1007/978-1-4939-3804-9_18

Download citation

  • DOI: https://doi.org/10.1007/978-1-4939-3804-9_18

  • Published:

  • Publisher Name: Humana Press, New York, NY

  • Print ISBN: 978-1-4939-3802-5

  • Online ISBN: 978-1-4939-3804-9

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics