Abstract
In this chapter, we present an automatic object detection and segmentation framework based on Marginal Space Learning (MSL), which integrates the components described in previous chapters into a complete segmentation system. In addition, simple and efficient methods based on mesh resampling are developed to establish mesh point correspondence, required to train a mean shape for shape initialization and build a statistical shape model for object boundary delineation. We use the four-chamber heart segmentation in cardiac Computed Tomography (CT) data as an example to illustrate the segmentation framework. Most of the technologies developed for heart chamber segmentation are generic, therefore can be applied directly or adapted easily to segment other anatomies in different imaging modalities.
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References
Andreopoulos, A., Tsotsos, J.K.: Efficient and generalizable statistical models of shape and appearance for analysis of cardiac MRI. Medical Image Analysis 12(3), 335–357 (2008)
van Assen, H.C., Danilouchkine, M.G., Frangi, A.F., Ordas, S., Westernberg, J.J.M., Reiber, J.H.C., Lelieveldt, B.P.F.: SPASM: A 3D-ASM for segmentation of sparse and arbitrarily oriented cardiac MRI data. Medical Image Analysis 10(2), 286–303 (2006)
Bao, Z., Zhukov, L., Guskov, I., Wood, J., Breen, D.: Dynamic deformable models for 3D MRI heart segmentation. In: Proc. of SPIE Medical Imaging, pp. 398–405 (2002)
Belongie, S., Malik, J., Puzicha, J.: Shape matching and object recognition using shape contexts. IEEE Trans. Pattern Anal. Machine Intell. 24(4), 509–522 (2002)
von Berg, J., Lorenz, C.: Multi-surface cardiac modelling, segmentation, and tracking. In: Proc. Functional Imaging and Modeling of the Heart, pp. 1–11 (2005)
Bookstein, F.L.: Principal warps: Thin-plate splines and the decomposition of deformation. IEEE Trans. Pattern Anal. Machine Intell. 11(6), 567–585 (1989)
Chui, H., Rangarajan, A.: A new point matching algorithm for non-rigid registration. Computer Vision and Image Understanding 89(2–3), 114–141 (2003)
Cohen, L.D.: On active contour models and balloons. CVGIP: Image Understanding 53(2), 211–218 (1991)
Cootes, T.F., Taylor, C.J., Cooper, D.H., Graham, J.: Active shape models—their training and application. Computer Vision and Image Understanding 61(1), 38–59 (1995)
Corsi, C., Saracino, G., Sarti, A., Lamberti, C.: Left ventricular volume estimation for real-time three-dimensional echocardiography. IEEE Trans. Medical Imaging 21(9), 1202–1208 (2002)
Davies, R.H., Twining, C.J., Cootes, T.F., Waterton, J.C., Taylor, C.J.: A minimum description length approach to statistical shape modeling. IEEE Trans. Medical Imaging 21(5), 525–537 (2002)
Dollár, P., Tu, Z., Belongie, S.: Supervised learning of edges and object boundaries. In: Proc. IEEE Conf. Computer Vision and Pattern Recognition, pp. 1964–1971 (2006)
Dryden, I.L., Mardia, K.V.: Statistical Shape Analysis. John Wiley, Chichester (1998)
Ecabert, O., Peters, J., Weese, J.: Modeling shape variability for full heart segmentation in cardiac computed-tomography images. In: Proc. of SPIE Medical Imaging, pp. 1199–1210 (2006)
Frangi, A.F., Niessen, W.J., Viergever, M.A.: Three-dimensional modeling for functional analysis of cardiac images: A review. IEEE Trans. Medical Imaging 20(1), 2–25 (2001)
Frangi, A.F., Rueckert, D., Schnabel, J.A., Niessen, W.J.: Automatic construction of multiple-object three-dimensional statistical shape models: Application to cardiac modeling. IEEE Trans. Medical Imaging 21(9), 1151–1166 (2002)
Fritz, D., Krolla, J., Dillmann, R., Scheuring, M.: Automatic 4D-segmentation of the left ventricle in cardiac-CT-data. In: Proc. of SPIE Medical Imaging, pp. 1–11 (2007)
Fritz, D., Rinck, D., Dillmann, R., Scheuring, M.: Segmentation of the left and right cardiac ventricle using a combined bi-temporal statistical model. In: Proc. of SPIE Medical Imaging, pp. 605–614 (2006)
Fritz, D., Rinck, D., Unterhinninghofen, R., Dillmann, R., Scheuring, M.: Automatic segmentation of the left ventricle and computation of diagnostic parameters using regiongrowing and a statistical model. In: Proc. of SPIE Medical Imaging, pp. 1844–1854 (2005)
Gerard, O., Billon, A.C., Rouet, J.M., Jacob, M., Fradkin, M., Allouche, C.: Efficient model-based quantification of left ventricular function in 3-D echocardiography. IEEE Trans. Medical Imaging 21(9), 1059–1068 (2002)
van Ginneken, B., Frangi, A.F., Staal, J.J., ter Haar Romeny, B.M., Viergever, M.A.: Active shape model segmentation with optimal features. IEEE Trans. Medical Imaging 21(8), 924–933 (2002)
Girosi, F., Jones, M., Poggio, T.: Regularization theory and neural networks architectures. Neural Computation 7(2), 219–269 (1995)
Goldfarb, G., Idnani, A.: A numerically stable dual method for solving strictly convex quadratic programs. Mathematical Programming 27(1), 1–33 (1983)
Hong, W., Georgescu, B., Zhou, X.S., Krishnan, S., Ma, Y., Comaniciu, D.: Database-guided simultaneous multi-slice 3D segmentation for volumetric data. In: Proc. European Conf. Computer Vision, pp. 397–409 (2006)
Jolly, M.P.: Automatic segmentation of the left ventricle in cardiac MR and CT images. Int. J. Computer Vision 70(2), 151–163 (2006)
Kass, M., Witkin, A., Terzopoulos, D.: Snakes: Active contour models. Int. J. Computer Vision 1(4), 321–331 (1988)
Kelm, B.M., Wels, M., Zhou, S.K., Seifert, S., Suehling, M., Zheng, Y., Comaniciu, D.: Spine detection in CT and MR using iterated marginal space learning. Medical Image Analysis 17(8), 1283–1292 (2013)
Kelm, B.M., Zhou, S.K., Suehling, M., Zheng, Y., Wels, M., Comaniciu, D.: Detection of 3D spinal geometry using iterated marginal space learning. In: Proc. MICCAI Workshop Medical Computer Vision — Recognition Techniques and Applications in Medical Imaging, pp. 96–105 (2010)
Li, K., Wu, X., Chen, D.Z., Sonka, M.: Optimal surface segmentation in volumetric images—A graph-theoretic approach. IEEE Trans. Pattern Anal. Machine Intell. 28(1), 119–134 (2006)
Ling, H., Zhou, S.K., Zheng, Y., Georgescu, B., Suehling, M., Comaniciu, D.: Hierarchical, learning-based automatic liver segmentation. In: Proc. IEEE Conf. Computer Vision and Pattern Recognition, pp. 1–8 (2008)
Lorenz, C., von Berg, J.: A comprehensive shape model of the heart. Medical Image Analysis 10(4), 657–670 (2006)
Lorenz, C., Krahnstover, N.: Generation of point based 3D statistical shape models for anatomical objects. Computer Vision and Image Understanding 77(2), 175–191 (2000)
Lötjönen, J., Kivistö, S., Koikkalainen, J., Smutek, D., Lauerma, K.: Statistical shape model of atria, ventricles and epicardium from short- and long-axis MR images. Medical Image Analysis 8(3), 371–386 (2004)
Lu, X., Georgescu, B., Zheng, Y., Otsuki, J., Bennett, R., Comaniciu, D.: AutoMPR: Automatic detection of standard planes from three dimensional echocardiographic data. In: Proc. IEEE Int’l Sym. Biomedical Imaging, pp. 1279–1282 (2008)
Martin, D., Fowlkes, C., Malik, J.: Learning to detect natural image boundaries using local brightness, color and texture cues. IEEE Trans. Pattern Anal. Machine Intell. 26(5), 530–549 (2004)
McInerney, T., Terzopoulos, D.: A dynamic finite element surface model for segmentation and tracking in multidimensional medical images with application to cardiac 4D image analysis. Computerized Medical Imaging and Graphics 19(1), 69–83 (1995)
Mitchell, S.C., Bosch, J.G., Lelieveldt, B.P.F., van Geest, R.J., Reiber, J.H.C., Sonka, M.: 3-D active appearance models: Segmentation of cardiac MR and ultrasound images. IEEE Trans. Medical Imaging 21(9), 1167–1178 (2002)
Moré, J.J., Toraldo, G.: On the solutions of large quadratic programming problems with bound constraints. SIAM J. Optimization 1(1), 93–113 (1991)
Neubauer, A., Wegenkiltl, R.: Analysis of four-dimensional cardiac data sets using skeleton-based segmentation. In: Proc. Int’l Conf. in Central Europe on Computer Graphics and Visualization, pp. 330–337 (2003)
Park, K., Montillo, A., Metaxas, D., Axel, L.: Volumetric heart modeling and analysis. Communications of the ACM 48(2), 43–48 (2005)
Schwing, A., Zheng, Y.: Reliable extraction of the mid-sagittal plane in 3D brain MRI via hierarchical landmark detection. In: Proc. IEEE Int’l Sym. Biomedical Imaging, pp. 1–4 (2014)
Seifert, S., Barbu, A., Zhou, K., Liu, D., Feulner, J., Huber, M., Suehling, M., Cavallaro, A., Comaniciu, D.: Hierarchical parsing and semantic navigation of full body CT data. In: Proc. of SPIE Medical Imaging, pp. 1–8 (2009)
Taubin, G.: Curve and surface smoothing without shrinkage. In: Proc. Int’l Conf. Computer Vision, pp. 852–857 (1995)
Taubin, G.: Optimal surface smoothing as filter design. In: Proc. European Conf. Computer Vision, pp. 283–292 (1996)
Tu, Z.: Probabilistic boosting-tree: Learning discriminative methods for classification, recognition, and clustering. In: Proc. Int’l Conf. Computer Vision, pp. 1589–1596 (2005)
Wahba, G.: Spline Models for Observational Data. Soc. Industrial and Applied Math. (1990)
Wels, M., Zheng, Y., Carneiro, G., Huber, M., Hornegger, J., Comaniciu, D.: Fast and robust 3-D MRI brain structure segmentation. In: Proc. Int’l Conf. Medical Image Computing and Computer Assisted Intervention, vol. 2, pp. 575–583 (2009)
Yang, L., Georgescu, B., Zheng, Y., Foran, D.J., Comaniciu, D.: A fast and accurate tracking algorithm of left ventricles in 3D echocardiography. In: Proc. IEEE Int’l Sym. Biomedical Imaging, pp. 221–224 (2008)
Yang, L., Georgescu, B., Zheng, Y., Meer, P., Comaniciu, D.: 3D ultrasound tracking of the left ventricles using one-step forward prediction and data fusion of collaborative trackers. In: Proc. IEEE Conf. Computer Vision and Pattern Recognition, pp. 1–8 (2008)
Yang, L., Georgescu, B., Zheng, Y., Wang, Y., Meer, P., Comaniciu, D.: Prediction based collaborative trackers (PCT): A robust and accurate approach toward 3D medical object tracking. IEEE Trans. Medical Imaging 30(11), 1921–1932 (2011)
Zheng, Y., Barbu, A., Georgescu, B., Scheuering, M., Comaniciu, D.: Fast automatic heart chamber segmentation from 3D CT data using marginal space learning and steerable features. In: Proc. Int’l Conf. Computer Vision, pp. 1–8 (2007)
Zheng, Y., Barbu, A., Georgescu, B., Scheuering, M., Comaniciu, D.: Four-chamber heart modeling and automatic segmentation for 3D cardiac CT volumes using marginal space learning and steerable features. IEEE Trans. Medical Imaging 27(11), 1668–1681 (2008)
Zheng, Y., Georgescu, B., Comaniciu, D.: Marginal space learning for efficient detection of 2D/3D anatomical structures in medical images. In: Proc. Information Processing in Medical Imaging, pp. 411–422 (2009)
Zheng, Y., Georgescu, B., Ling, H., Zhou, S.K., Scheuering, M., Comaniciu, D.: Constrained marginal space learning for efficient 3D anatomical structure detection in medical images. In: Proc. IEEE Conf. Computer Vision and Pattern Recognition, pp. 194–201 (2009)
Zheng, Y., Georgescu, B., Vega-Higuera, F., Zhou, S.K., Comaniciu, D.: Fast and automatic heart isolation in 3D CT volumes: Optimal shape initialization. In: Proc. MICCAI Workshop Machine Learning in Medical Imaging, pp. 84–91 (2010)
Zheng, Y., John, M., Liao, R., Nottling, A., Boese, J., Kempfert, J., Walther, T., Brockmann, G., Comaniciu, D.: Automatic aorta segmentation and valve landmark detection in C-arm CT for transcatheter aortic valve implantation. IEEE Trans. Medical Imaging 31(12), 2307–2321 (2012)
Zheng, Y., Lu, X., Georgescu, B., Littmann, A., Mueller, E., Comaniciu, D.: Robust object detection using marginal space learning and ranking-based multi-detector aggregation: Application to automatic left ventricle detection in 2D MRI images. In: Proc. IEEE Conf. Computer Vision and Pattern Recognition, pp. 1343–1350 (2009)
Zheng, Y., Wang, T., John, M., Zhou, S.K., Boese, J., Comaniciu, D.: Multi-part left atrium modeling and segmentation in C-arm CT volumes for atrial fibrillation ablation. In: Proc. Int’l Conf. Medical Image Computing and Computer Assisted Intervention, vol. 3, pp. 487–495 (2011)
Zheng, Y., Yang, D., John, M., Comaniciu, D.: Multi-part modeling and segmentation of left atrium in C-arm CT for image-guided ablation of atrial fibrillation. IEEE Trans. Medical Imaging (2014). In Press
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Zheng, Y., Comaniciu, D. (2014). Nonrigid Object Segmentation: Application to Four-Chamber Heart Segmentation. In: Marginal Space Learning for Medical Image Analysis. Springer, New York, NY. https://doi.org/10.1007/978-1-4939-0600-0_7
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DOI: https://doi.org/10.1007/978-1-4939-0600-0_7
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