Skip to main content

The Polymerase Chain Reaction: Applications to Maize Transposable Elements

  • Chapter
The Maize Handbook

Part of the book series: Springer Lab Manuals ((SLM))

Abstract

The polymerase chain reaction serves to amplify specifically the DNA sequence located between two primers selected by the investigator. This enables the investigator to, among other things, directly clone new alleles of previously cloned genes without constructing and screening a library. For an overview of the theory and application of PCR techniques we direct the reader to PCR Protocols (Innes et al. 1990) and a recent review (Bej et al. 1991). This chapter is devoted to techniques designed to overcome the difficulties that are commonly encountered in the application of PCR to maize DNA.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Chapter
USD 29.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Preview

Unable to display preview. Download preview PDF.

Unable to display preview. Download preview PDF.

Similar content being viewed by others

References

  • Bej A, Mahbubani MH, Atlas RM (1991) Amplification of nucleic acids by polymerase chain reaction (PCR) and other methods and their applications. Crit Rev Biochem Mol Bio 26(3/4): 301–334

    Article  CAS  Google Scholar 

  • Britt AB, Walbot V (1991) Germinal and somatic products of Mu excision from the Bronze-1 gene of Zea mays. Mol Gen Genetics 227: 267–276

    CAS  Google Scholar 

  • Clark JM (1988) Novel non-templated nucleotide addition reactions catalyzed by procaryotic and eucaryotic DNA polymerases. Nucl Acids Res 16(20): 9677–9687

    Article  PubMed  CAS  Google Scholar 

  • Doseff A, Martienssen R, Sundaresan V (1991) Somatic excision of the Mu1 transposable element of maize. Nucl Acids Res 19(3): 579–584

    Article  PubMed  CAS  Google Scholar 

  • Earp DJ, Lowe B, Baker B (1990) Amplification of genomic sequences flanking transposable elements in host and heterologous plants: a tool for transposon tagging and genome characterization. Nucl Acids Res 18(11): 3271–3279

    Article  PubMed  CAS  Google Scholar 

  • Innes MA, Gelfand DH, Sninsky JJ, White TJ (1990) PCR Protocols: A Guide to Methods and Applications. Academic Press, San Diego, CA, 482 pp

    Google Scholar 

  • Loh EY, Elliott JF, Cwirla S, Lanier LL, Davis MM (1989) Polymerase chain reaction with single-sided specificity: analysis of T-cell receptor delta chain. Science 13: 217–220

    Article  Google Scholar 

  • Masson P, Strem M, Fedoroff N (1991) The tnpA and tnpD gene products of the Spm element are required for transposition in tobacco. Plant Cell 3: 73–85

    PubMed  CAS  Google Scholar 

  • McConlogue L, Brow MAD, Innis MA (1988) Structure-independent DNA amplification by PCR using 7-deaza-2′-deoxyguanosine. Nucl Acids Res 16(20): 9869

    Article  PubMed  CAS  Google Scholar 

  • Nash J, Luehrsen KR, Walbot V (1990) Bronze-2 gene of maize: reconstruction of a wild-type allele and analysis of transcription and splicing. Plant Cell 2: 1039–1049

    PubMed  CAS  Google Scholar 

  • Ochman H, Gerber AS, Hartl DL (1988) Genetic applications of an inverse PCR reaction. Genetics 120: 621–623

    PubMed  CAS  Google Scholar 

  • Osborne BI, Corr CA, Prince JP, Hehl R, Tanksley SD, McCormick S, Baker B (1991) Ac transposition from a T-DNA can generate linked and unlinked clusters of insertions in the tomato genome. Genetics 129: 833–844

    PubMed  CAS  Google Scholar 

  • Ralston E, English JJ, Dooner HK (1988) Sequence of three bronze alleles of maize and correlation with the genetic fine structure. Genetics 119: 185–197

    PubMed  CAS  Google Scholar 

  • Shyamala V, Ames GF (1989) Genome walking by single-specific-primer polymerase chain reaction: SSP-PCR. Gene 84: 1–8

    Article  PubMed  CAS  Google Scholar 

  • Sullivan TD, Schiefelbein JW, Nelson OE (1989) Tissue-specific effects of maize Bronze gene promoter mutations induced by Ds1 insertion and excision. Dev Gen 10: 412–424

    Article  CAS  Google Scholar 

Download references

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 1994 Springer-Verlag New York, Inc.

About this chapter

Cite this chapter

Britt, A.B., Earp, D.J. (1994). The Polymerase Chain Reaction: Applications to Maize Transposable Elements. In: Freeling, M., Walbot, V. (eds) The Maize Handbook. Springer Lab Manuals. Springer, New York, NY. https://doi.org/10.1007/978-1-4612-2694-9_103

Download citation

  • DOI: https://doi.org/10.1007/978-1-4612-2694-9_103

  • Publisher Name: Springer, New York, NY

  • Print ISBN: 978-0-387-94735-8

  • Online ISBN: 978-1-4612-2694-9

  • eBook Packages: Springer Book Archive

Publish with us

Policies and ethics