Abstract
DNA-encoded library (DEL) links the powers of genetics and chemicals via high-efficient enzymatic ligation of DNA barcodes and the “split and pool” combinatorial synthesis. Natural products (NPs) are evolutionary optimized compounds that have played a key role in the history of human drug discovery. Herein, we describe a method for functionality-independent annotation of complex natural products with amplifiable DNA barcodes to generate a DNA-encoded natural product library (nDEL). This method provides a simple and practical solution to leverage natural products by DNA barcoding.
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References
Newman DJ, Cragg GM (2012) Natural products as sources of new drugs over the 30 years from 1981 to 2010. J Nat Prod 75:311–335. https://doi.org/10.1021/np200906s
Suzuki T, Okamura T, Tomohiro T et al (2015) Third generation photo-cross-linked small-molecule affinity matrix: a photoactivatable and photocleavable system enabling quantitative analysis of the photo-cross-linked small molecules and their target purification. Bioconjug Chem 26:389–395. https://doi.org/10.1021/bc500559e
Paulsen SR (1960) 3.3-Dialkyl-diazacyclopropen-(1). Angew Chemie 72:781–782. https://doi.org/10.1002/ange.19600722119
Moss RA (1989) Carbenic reactivity revisited. Acc Chem Res 22:15–21. https://doi.org/10.1021/ar00157a003
Ma P, Xu H, Li J et al (2019) Functionality-independent DNA encoding of complex natural products. Angew Chemie Int Ed 58:9254–9261. https://doi.org/10.1002/anie.201901485
Kolb HC, Finn MG, Sharpless KB (2001) Click chemistry: diverse chemical function from a few good reactions. Angew Chemie Int Ed 40:2004–2021. https://doi.org/10.1002/1521-3773(20010601)40:11<2004::AID-ANIE2004>3.0.CO;2-5
Liang J, Zhang L, Tan XL et al (2017) Chemical synthesis of diubiquitin-based photoaffinity probes for selectively profiling ubiquitin-binding proteins. Angew Chemie Int Ed 56:2744–2748. https://doi.org/10.1002/anie.201611659
Deng H, Zhou J, Sundersingh FS et al (2015) Discovery, SAR, and X-ray binding mode study of BCATm inhibitors from a novel DNA-encoded library. ACS Med Chem Lett 6:919–924. https://doi.org/10.1021/acsmedchemlett.5b00179
Acknowledgment
We acknowledge research funding from the National Natural Science Foundation of China (Grants 21502114, 31770776, and 31500632) and the Science and Technology Commission of Shanghai Municipality (Grant 16DZ1910200).
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Xu, H., Ma, P. (2022). DNA Encoding of Natural Products. In: Israel, D., Ding, Y. (eds) DNA-Encoded Chemical Libraries. Methods in Molecular Biology, vol 2541. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2545-3_13
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DOI: https://doi.org/10.1007/978-1-0716-2545-3_13
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