Skip to main content

Wireless Fixed Camera Network for Greenhouse-Based Plant Phenotyping

  • Protocol
  • First Online:
High-Throughput Plant Phenotyping

Part of the book series: Methods in Molecular Biology ((MIMB,volume 2539))

Abstract

An indoor wireless fixed camera network was developed for an efficient, cost-effective method of extracting informative plant phenotypes in a controlled greenhouse environment. Deployed at the Donald Danforth Plant Science Center (DDPSC), this fixed camera platform implements rapid and automated plant phenotyping. The platform uses low-cost Raspberry Pi computers and digital cameras to monitor aboveground morphological and developmental plant phenotypes. The Raspberry Pi is a readily programmable, credit card-sized computer board with remote accessibility. A standard camera module connects to the Raspberry Pi computer board and generates eight-megapixel resolution images. With a fixed array, or “bramble,” of Raspberry Pi computer boards and camera modules placed strategically in a greenhouse, we can capture automated, high-resolution images for 3D reconstructions of individual plants on timescales ranging from minutes to hours, capturing temporal changes in plant phenotypes.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 109.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 139.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 199.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

References

  1. Wu C (2011) VisualSFM: a visual structure from motion system

    Google Scholar 

  2. CloudCompare (version 2.1) (2019) Retrieved from https://www.cloudcompare.org/

  3. Massie ML, Chun BN, Culler DE (2004) The ganglia distributed monitoring system: design, implementation, and experience. Parallel Comput 30(7):817–840

    Article  Google Scholar 

  4. Hochstein L, Moser R (2017) Ansible: up and running: automating configuration management and deployment the easy way. O’Reilly Media, Inc

    Google Scholar 

  5. QGIS Development Team. (2016) QGIS geographic information system. Open Source Geospatial Foundation Project. Retrieved from https://www.osgeo.org/

  6. Yu K, Kirchgessner N, Grieder C et al (2017) An image analysis pipeline for automated classification of imaging light conditions and for quantification of wheat canopy cover time series in field phenotyping. Plant Methods 13(1):15

    Article  Google Scholar 

  7. Liebisch F, Kirchgessner N, Schneider D et al (2015) Remote, aerial phenotyping of maize traits with a mobile multi-sensor approach. Plant Methods 11(1):9

    Article  Google Scholar 

  8. Hartmann A, Czauderna T, Hoffmann R et al (2011) HTPheno: an image analysis pipeline for high-throughput plant phenotyping. BMC Bioinform 12(1):148

    Article  Google Scholar 

Download references

Acknowledgments

This protocol reflects the input of a larger project team including César Lizárraga, Brandon Patrick, Phil Ozersky, Stuart Marshall, Bradley Flynn, Avisek Datta, and Darren O’Brien. The information presented here is based upon work partially supported by the National Science Foundation under Award Number IIA-1355406 and the US Department of Energy Advanced Research Projects Agency-Energy (ARPA-E) under Cooperative Agreement Number DE-AR0000594. The views and opinions of authors expressed herein do not necessarily state or reflect those of the US government or any agency thereof.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Nadia Shakoor .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2022 The Author(s), under exclusive license to Springer Science+Business Media, LLC, part of Springer Nature

About this protocol

Check for updates. Verify currency and authenticity via CrossMark

Cite this protocol

Shakoor, N., Mockler, T.C. (2022). Wireless Fixed Camera Network for Greenhouse-Based Plant Phenotyping. In: Lorence, A., Medina Jimenez, K. (eds) High-Throughput Plant Phenotyping. Methods in Molecular Biology, vol 2539. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-2537-8_6

Download citation

  • DOI: https://doi.org/10.1007/978-1-0716-2537-8_6

  • Published:

  • Publisher Name: Humana, New York, NY

  • Print ISBN: 978-1-0716-2536-1

  • Online ISBN: 978-1-0716-2537-8

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics