Abstract
The filamentous cytoskeletal protein microtubule, a polymer of α and β heterodimers of tubulin, plays major roles in intracellular transport as well as in vitro molecular actuation and transportation. Functionalization of tubulin dimers through covalent linkage facilitates utilization of microtubule in the nanobioengineering. Here we present a detailed description of the methodologies used to modify tubulin dimers with DNA strand and biotin through covalent interaction.
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References
Hess H, Bachand GD (2005) Biomolecular motors. Mater Today 8:22–29
Diez S, Helenius JH, Howard J (2004) Biomolecular motors operating in engineered environments. Nanobiotechnology: Concepts, Applications and Perspectives 1:1–18
Hess H, Clemmens J, Qin D, Howard J, Vogel V (2001) Light-controlled molecular shuttles made from motor proteins carrying cargo on engineered surfaces. Nano Lett 1:235–239
Kabir AMR, Inoue D, Kakugo A (2020) Molecular swarm robots: recent progress and future challenges. Sci Technol Adv Mater 21:323–332
Steuerwald D, Früh SM, Griss R, Lovchik RD, Vogel V (2014) Nanoshuttles propelled by motor proteins sequentially assemble molecular cargo in a microfluidic device. Lab Chip 14:3729–3738
Kurz JC, Williams RC (1995) Microtubule-associated proteins and the flexibility of microtubules. Biochemistry 34:13374–13380
Malcos JL, Hancock WO (2011) Engineering tubulin: microtubule functionalization approaches for nanoscale device applications. Appl Microbiol Biotechnol 90:1–10
Peloquin J, Komarova Y, Borisy G (2005) Conjugation of fluorophores to tubulin. Nat Methods 2:299–303
Kabir AMR, Inoue D, Kakugo A, Sada K, Gong JP (2012) Active self-organization of microtubules in an inert chamber system. Polym J 44:607–611
Keya JJ, Suzuki R, Kabir AMR, Inoue D, Asanuma H, Sada K, Hess H, Kuzuya A, Kakugo A (2018) DNA-assisted swarm control in a biomolecular motor system. Nat Commun 9:453
Akter M, Keya JJ, Kabir AMR, Asanuma H, Murayama K, Sada K, Kakugo A (2020) Photo-regulated trajectories of gliding microtubules conjugated with DNA. Chem Commun 56:7953–7956
Bachand GD, Rivera SB, Carroll-Portillo A, Hess H, Bachand M (2006) Active capture and transport of virus particles using a biomolecular motor-driven, nanoscale antibody sandwich assay. Small 2:381–385
Wada S, Rashedul Kabir AM, Ito M, Inoue D, Sada K, Kakugo A (2015) Effect of length and rigidity of microtubules on the size of ring-shaped assemblies obtained through active self-organization. Soft Matter 11:1151–1157
Kakugo A, Kabir AMR, Hosoda N, Shikinaka K, Gong JP (2011) Controlled clockwise-counterclockwise motion of the ring-shaped microtubules assembly. Biomacromolecules 12:3394–3399
Wada S, Kabir AMR, Kawamura R, Ito M, Inoue D, Sada K, Kakugo A (2015) Controlling the bias of rotational motion of ring-shaped microtubule assembly. Biomacromolecules 16:374–378
Ito M, Kabir AMR, Inoue D, Torisawa T, Toyoshima Y, Sada K, Kakugo A (2014) Formation of ring-shaped microtubule assemblies through active self-organization on dynein. Polym J 46:220–225
Ramachandran S, Ernst KH, Bachand GD, Vogel V, Hess H (2006) Selective loading of kinesin-powered molecular shuttles with protein cargo and its application to biosensing. Small 2:330–334
Hyman A, Drechsel D, Kellogg D, Salser S, Sawin K, Steffen P, Wordeman L, Mitchison T (1991) Preparation of modified tubulins. Methods Enzymol 196:478–485
Nitta T, Hess H (2005) Dispersion in active transport by kinesin-powered molecular shuttles. Nano Lett 5:1337–1342
Hiyama S, Inoue T, Shima T, Moritani Y, Suda T, Sutoh K (2008) Autonomous loading, transport, and unloading of specified cargoes by using DNA hybridization and biological motor-based motility. Small 4:410–415
Asanuma H, Ito T, Yoshida T, Liang X, Komiyama M (1999) Photoregulation of the formation and dissociation of a DNA duplex by using the cis-trans isomerization of azobenzene. Angew Chem Int Ed 38:2393–2395
Castoldi M, Popov AV (2003) Purification of brain tubulin through two cycles of polymerization – depolymerization in a high-molarity buffer. Protein Expr Purif 32:83–88
Acknowledgments
This work was financially supported by Grant-in-Aid for Scientific Research on Innovative Areas “Molecular Engine” (JSPS KAKENHI Grant Number JP18H05423), and Grant-in-Aid for Scientific Research (A) (18H03673) from Japan Society for the Pro-motion of Science (JSPS).
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Akter, M., Keya, J.J., Kabir, A.M.R., Rashid, M.R., Ishii, S., Kakugo, A. (2022). Functionalization of Tubulin: Approaches to Modify Tubulin with Biotin and DNA. In: Inaba, H. (eds) Microtubules. Methods in Molecular Biology, vol 2430. Humana, New York, NY. https://doi.org/10.1007/978-1-0716-1983-4_3
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DOI: https://doi.org/10.1007/978-1-0716-1983-4_3
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