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Synthesis of bis-peptides attached on poly[n]norbornene molecular scaffolds with well-defined relative positions and distances

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Abstract

This article describes novel synthetic approaches to polynorbornene molecular scaffolds substituted with peptides at various, well-defined positions. A library of norbornene building blocks with attached peptides was prepared. Alkene cyclobutane epoxide (ACE) coupling method was used as a key step reaction for the connection of two norbornene building blocks into bis-peptide scaffolds. Photodimerization of cyclobutene diesters offers an alternative route to polynorbornene bis-peptides. Pyrrolo-peptides were used for preparation of peptide-substituted 7-aza norbornenes. Asymmetrical bis-peptide scaffolds were prepared by ACE coupling of peptide-norbornane epoxide with another norbornene-peptide block. Chemical elaboration of bridgehead dimethyl esters of ACE products or epoxide ACE reagents was also used for peptide attachment.

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References

  1. Mutter M, Tuchscherer G (1997) Non-native architectures in protein design and mimicry. Cell Mol Life Sci 53: 851–863. doi:10.1007/s000180050105

    Article  PubMed  CAS  Google Scholar 

  2. Akerfeldt KS, Kim RM, Camac D, Groves JT, Lear JD, DeGrado WF (1992) Tetraphilin: a four-helix proton channel built on a tetraphenylporphyrin framework. J Am Chem Soc 114: 9656–9657. doi:10.1021/ja00050a054

    Article  CAS  Google Scholar 

  3. Saitton S, Kihlberg J, Luthman KA (2004) Synthetic approach to 2,3,4-substituted pyridines useful as scaffolds for tripeptidomimetics. Tetrahedron 60: 6113–6120. doi:10.1016/jtet200405048

    Article  CAS  Google Scholar 

  4. Pons JP, Fauchère JL, Lamaty F, Molla A, Lazaro RA (1998) Constrained Diketopiperazine as a New Scaffold for the Synthesis of Peptidomimetics. Eur J Org Chem 853–859. doi:10.1002/(SICI)1099-0690(199805)1998:5

  5. Brewster RE, Caran KL, Sasine JS, Shuker SB (2004) Peptidocalixarenes in molecular recognition. Curr Org Chem 8: 867–881. doi:10.2174/1385272043370401

    Article  CAS  Google Scholar 

  6. Li S, Marthandan N, Bowerman D, Garner HR, Kodadek T (2005) Photolithographic synthesis of cyclic peptide arrays using a differential deprotection strategy. Chem Commun 581–583. doi:10.1039/B415578E

  7. Franke R, Doll C, Wray V, Eichler J (2003) Solid-phase synthesis of structurally diverse scaffolded peptides for the mimicry of discontinuous protein binding sites. Protein and Peptide Lett 10: 531–539. doi:10.2174/0929866033478519

    Article  CAS  Google Scholar 

  8. Nestler HP (2000) Peptidocalixarenes in molecular recognition. Curr Org Chem 4: 397–410. doi:10.2174/1385272003376201

    Article  CAS  Google Scholar 

  9. Barry JF, Davis AP, Pérez-Payan MN, Elsegood MRJ, Jackson RFW, Gennari C, Piarulli U, Gude M (1999) A trifunctional steroid-based scaffold for combinatorial chemistry. Tetrahedron Lett 40: 2849–2852. doi:10.1016/S0040-4039(99)00309-3

    Article  CAS  Google Scholar 

  10. Thanh Le GT, Abbenante G, Becker B, Grathwohl M, Halliday J, Tometzki G, Zuegg J, Meutermans W (2003) Molecular diversity through sugar scaffolds. Drug Discov Today 8: 701–709. doi:10.1016/S1359-6446(03)02751-X

    Article  Google Scholar 

  11. Pulka K, Feytens D, Misicka A, Tourwé D (2010) New tetracyclic tetrahydro-β-carbolines as tryptophan-derived peptidomimetics. Mol Divers 14: 97–108. doi:10.1007/s11030-009-9151-y

    Article  PubMed  CAS  Google Scholar 

  12. Hanessian S, Moitessier N, Wilmouth S (2000) Tetrahydrofuran as a scaffold for peptidomimetics application to the design and synthesis of conformationally constrained metalloproteinase inhibitors. Tetrahedron 56: 7643–7660. doi:10.1016/S0040-4020(00)00687-6

    Article  CAS  Google Scholar 

  13. Fotins J, Smithrud DB (2005) Creation and investigation of protein-core mimetics with parallel and antiparallel aligned amino acids. J Org Chem 70: 4452–4459. doi:10.1021/jo0479563

    Article  PubMed  CAS  Google Scholar 

  14. Hackenberger CPR, Schiffers I, Runsink J, Bolm C (2004) General synthesis of unsymmetrical norbornane scaffolds as inducers for hydrogen bond interactions in peptides. J Org Chem 69: 739–743. doi:10.1021/jo030295

    Article  PubMed  CAS  Google Scholar 

  15. Chakraborty TK, Ghosh A, Sankar AR, Kunwar AC (2002) Development of 2,3-diazabicyclo[2.2.1]heptane as a constrained azapeptide template and its uses in peptidomimetic studies. Tetrahedron Lett 43: 5551–5554. doi:10.1016/S0040-4039(02)01141-3

    Article  CAS  Google Scholar 

  16. Warrener RN, Butler DN, Russell RA (1998) Fundamental principles of BLOCK design and assembly in the production of large, rigid molecules with functional units (effectors) precisely located on a carbocyclic framework. Synlett 566–573. doi:10.1055/s-1998-3133

  17. Warrener RN, Butler DN, Margetić D, Mahadevan IB, Pfeffer FM, Winling A, Russell RA (2000) New and Improved ‘LEGO’ BLOCK Protocols for the Direct Synthesis of Hydrophilic Ribbon Molecules with Acid, Ester or Peptide Functionality. Tetrahedron Lett 41: 4671–4675. doi:10.1016/S0040-4039(00)00685-7

    Article  CAS  Google Scholar 

  18. Pfeffer FM, Russell RA (2003) Strategies and methods for the attachment of amino acids and peptides to chiral [n]polynorbornane templates. Org Biomol Chem 1: 1845–1851. doi:10.1039/b301980b

    Article  PubMed  CAS  Google Scholar 

  19. Pfeffer FM, Russell RA (2002) Synthesis of [n]polynorbornanes with differing edge substitution: a new class of regioselectively addressable framework. J Chem Soc Perkin Trans 1: 2680–2685. doi:10.1039/b206057d

    Article  Google Scholar 

  20. Malpass JR, Butler DN, Johnston MR, Hammond MLA, Warrener RN (2000) In-line proximity effects in extended 7-Aza norbornanes II: a major reduction of N-inversion barriers in symmetrically flanked systems. Org Lett 2: 725–728. doi:10.1021/ol9911019

    Article  PubMed  CAS  Google Scholar 

  21. Bako P, Novak T, Ludanyi K, Pete B, Toke L, Keglevich G (1999) D-Glucose-based azacrown ethers with a phosphonoalkyl side chain: application as enantioselective phase transfer catalysts. Tetrahedron Asymmetry 10: 2373–2380. doi:10.1016/S0957-4166(99)00224-4

    Article  CAS  Google Scholar 

  22. Gloede J, Poduška K, Gross H, Rudinger J (1968) Amino acids and peptides 79, alpha-pyrrolo analogues of alpha-amino acids. Collect Czech Chem Commun 33: 1307–1314

    CAS  Google Scholar 

  23. Boreham CJ, Buckingham DA, Keene FR (1979) Intramolecular hydrolysis of glycinamide and glycine dipeptides coordinated to cobalt(III) I Mercury(2+), hypochlorous acid, and base hydrolysis of cis-[Co(en)2Br(glyNHR)]2+ (R  =  H, CH2CO2 C3H7, CH2CO 2 ) and properties of cis- and trans-[Co(en)2(OH2/OH) (glyNHR)]3+/2+ ions. Inorg Chem 18: 28–38. doi:10.1021/ic50191a006

    Article  CAS  Google Scholar 

  24. Pleus S, Schwientek M (1997) Design of chiral poly(pyrroles). Synth Commun 27: 2917–2930. doi:10.1080/00397919708004998

    Article  CAS  Google Scholar 

  25. Campbell CD, Rees CW (1969) Reactive intermediates Part I. Synthesis and oxydation of 1- and 2- aminobenzotriazole. J Chem Soc C 742–748. doi:10.1039/J39690000742

  26. Warrener RN, Margetić D, Foley PJ, Butler DN, Winling A, Beales KA, Russell RA (2001) syn-facial hetero-bridged [n]polynorbornanes: a new class of polarofacial framework molecules composed of fused 7-oxa and 7-azanorbornanes. Tetrahedron 57: 571–582. doi:10.1016/S0040-4020(00)01027-9

    Article  CAS  Google Scholar 

  27. Biagini SCG, Bush SM, Gibson VC, Mazzariol L, North M, Teasdale WG, Williams CM, Zagotto G, Zamuner D (1995) The synthesis of N-norbornenyl-amino acids and esters: Monomers for the preparation of well defined polymers. Tetrahedron 26: 7247–7262. doi:10.1016/0040-4020(95)00349-D

    Article  Google Scholar 

  28. Biagini SCG, Gareth Davies R, North M, Gibson VC, Giles MR, Marshall EL, Robson DA (1999) The synthesis and ring-opening metathesis polymerization of peptide functionalized norbornenes. Chem Commun 235–236. doi:10.1039/A808189A

  29. Bodanszky M, Bodanszky A (1984) The practice of peptide synthesis. Springer, Berlin, pp 143–144

    Google Scholar 

  30. Auksi H, Yates P (1981) The stereochemistry and regiochemistry of the Diels-Alder reactions of 6-acetoxy-2,6-dimethyl-2,4-cyclohexadienone. Can J Chem 59: 2510–2517. doi:10.1139/v81-361

    Article  CAS  Google Scholar 

  31. Mitsudo T, Kokuryo K, Shinsugi T, Nakagawa Y, Watanabe Y, Takegami Y (1979) Ruthenium-catalyzed [2+2] cross-addition of norbornene derivatives and dimethyl acetylenedicarboxylate. J Org Chem 44: 4492–4496. doi:10.1021/jo00393a006

    Article  CAS  Google Scholar 

  32. Warrener RN, Margetić D, Sun G, Amarasekara AS, Foley P, Butler DN, Russell RA (1999) Molecular topology: the synthesis of a new class of rigid arc-shaped spacer molecules based on syn-facially fused norbornanes and 7-heteronorbornanes in which heterobridges are used to govern backbone curvature. Tetrahedron Lett 40: 4111–4114. doi:10.1016/S0040-4039(99)00694-2

    Article  CAS  Google Scholar 

  33. Warrener RN, Margetić D, Tiekink ERT, Russell RA (1997) The 1,3,4-oxadiazole and 1,3,4-thiadiazole coupling of norbornenes and 7-oxanorbornenes under high pressure: new structures, mechanistic detail and synthetic applications. Synlett 196–198. doi:10.1055/s-1997-738

  34. Warrener RN, Pitt IG, Butler DN (1983) The synthesis of new linear and angular systems useful as rigid rods and spacers in the design of molecules. Chem Commun 1340–1341. doi:10.1039/C39830001340

  35. Golić M, Margetić D, Butler D, Warrener RN (1998) A Photodimerisation route to space-separated bis-heterocycles. In: Rzepa HS, Kappe O (eds) Article 075, electronic conference on heterocyclic chemistry ‘98. Imperial College Press, ISBN-981-02-3549-1; http://www.chicacuk/ectoc/echet98

  36. Margetić D, Warrener RN, Russell RA (2000) Photochemical cycloadditions reagents for rigidly attaching the 1,4-dimethoxynaphthalene chromophore to scaffold alkene. Org Lett 2: 4003–4006. doi:10.1021/ol006571d

    Article  PubMed  Google Scholar 

  37. Gaussian03, Revision B03 (2003) Gaussian Inc, Pittsburgh, PA

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Correspondence to Davor Margetić.

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Shang, M., Warrener, R.N., Butler, D.N. et al. Synthesis of bis-peptides attached on poly[n]norbornene molecular scaffolds with well-defined relative positions and distances. Mol Divers 15, 541–560 (2011). https://doi.org/10.1007/s11030-010-9279-9

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  • DOI: https://doi.org/10.1007/s11030-010-9279-9

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