Skip to main content
Log in

Study of the self-association of molecular tweezers bearing two different arms: influence of the stereoelectronic effects of the arm substituents

  • Original Article
  • Published:
Journal of Inclusion Phenomena and Macrocyclic Chemistry Aims and scope Submit manuscript

Abstract

In the general field of molecular recognition, the self-assembly of a tweezer bearing a R(+) usnic acid arm and a substituted 1,8-naphthalimide moiety as a second arm was investigated through a 1H NMR study. Two self-association modes were evidenced: either the usnic acid arms (mode A) or the naphthalimide ones (mode B) were face to face in the center of the dimer. The existence of a third non-symmetrical mode (mode C) has not been evidenced experimentally. The behavior of these tweezers was discussed taking into account the electronic density of the naphtalimide arms and the slow mode A/mode B exchange rate (EXSY experiments). Only the mode A was observed when naphthalimide was either non-substituted (1) or substituted by Br (2). With one or two electrodonating substituents (OCH3 (3) or (OCH3)2 (4) or N(CH3)2 (5)) both modes A and B occured in a 50/50 ratio. This ratio depended on temperature for tweezer 3.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Fig. 1
Fig. 2
Fig. 3
Fig. 4
Fig. 5
Fig. 6
Fig. 7
Fig. 8
Fig. 9
Fig. 10
Fig. 11
Fig. 12
Scheme 1

Similar content being viewed by others

References

  1. Chen, C.-W., Whitlock, H.W.J.: Molecular tweezers: a simple model of bifunctional intercalation. J. Am. Chem. Soc. 100, 4921–4922 (1978)

    Article  CAS  Google Scholar 

  2. Hardouin-Lerouge, M., Hudhomme, P., Sallé, M.: Molecular clips and tweezers hosting neutral guests. Chem. Soc. Rev. 40, 30–43 (2011)

    Article  CAS  PubMed  Google Scholar 

  3. Leblond, J., Petitjean, A.: Molecular tweezers: concepts and applications. ChemPhysChem 12, 1043–1051 (2011)

    Article  CAS  PubMed  Google Scholar 

  4. Klärner, F., Kahlert, B.: Molecular tweezers and clips as synthetic receptors. Molecular recognition and dynamics in receptor—substrate complexes. Acc. Chem. Res. 36, 919–932 (2003)

    Article  PubMed  Google Scholar 

  5. He, Z., Yang, X., Jiang, W.: Synthesis, solid-state structures, and molecular recognition of chiral molecular tweezer and related structures based on a rigid bis-naphthalene cleft. Org. Lett. 17, 3880–3883 (2015)

    Article  CAS  PubMed  Google Scholar 

  6. Düker, M.H., Schäfer, H., Zeller, M., Azov, V.A.: Rationally designed calix[4]arene—pyrrolotetrathiafulvalene receptors for electron-deficient neutral guests. J. Org. Chem. 78, 4905–4912 (2013)

    Article  PubMed  Google Scholar 

  7. Harmata, M.: Chiral molecular tweezers. Acc. Chem. Res. 37, 862–873 (2004)

    Article  CAS  PubMed  Google Scholar 

  8. Herzog, G., Shmueli, M.D., Levy, L., Engle, L., Gazit, E., Klarner, F.-G., Schrader, T., Bitan, G., Segal, D.: The Lys-specific molecular tweezer, CLR01, modulates aggregation of the mutant p53 DNA binding domain and inhibits its toxicity. Biochemistry 54, 3729–3738 (2015)

    Article  CAS  PubMed  Google Scholar 

  9. Zimmerman, S.C.: A journey in bioinspired supramolecular chemistry: from molecular tweezers to small molecules that target myotonic dystrophy. Beilstein J. Org. Chem. 12, 125–138 (2016)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  10. Bier, D., Mittal, S., Bravo-rodriguez, K., Sowislok, A., Guillory, X., Briels, J., Heid, C., Bartel, M., Wettig, B., Brunsveld, L., Sanchez-garcia, E., Schrader, T., Ottmann, C.: The molecular tweezer CLR01 stabilizes a disordered protein-protein interface. J. Am. Chem. Soc. 139, 16256–16263 (2017)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Vöpel, T., Bravo-rodriguez, K., Mittal, S., Vachharajani, S., Gnutt, D., Sharma, A., Steinhof, A., Fatoba, O., Ellrichmann, G., Nshanian, M., Heid, C., Loo, J.A., Klarner, F., Schrader, T., Bitan, G., Wanker, E.E., Ebbinghaus, S., Sanchez-garcia, E.: Inhibition of huntingtin exon—1 aggregation by the molecular tweezer CLR01. J. Am. Chem. Soc. 139, 5640–5643 (2017)

    Article  PubMed  PubMed Central  Google Scholar 

  12. Valdes, C., Urs, P., Toledo, L.M., Kubik, S.W., Rebek, J.: Synthesis and self-assembly of pseudo-spherical homo- and heterodimeric capsules. J. Am. Chem. Soc. 117, 12733–12745 (1995)

    Article  CAS  Google Scholar 

  13. Haino, T., Fujii, T., Fukazawa, Y.: Guest binding and new self-assembly of bisporphyrins. J. Org. Chem. 71, 2572–2580 (2006)

    Article  CAS  PubMed  Google Scholar 

  14. Haino, T., Fujii, T., Watanabe, A., Takayanagi, U.: Supramolecular polymer formed by reversible self-assembly of tetrakisporphyrin. PNAS 106, 1–3 (2009)

    Article  Google Scholar 

  15. Branchi, B., Ceroni, P., Balzani, V., Cartagena, M.C., Klarner, F.-G., Schrader, T., Vogtle, F.: Fluorescent water-soluble molecular clips. Self-association and formation of adducts in aqueous and methanol solutions. New J. Chem. 33, 397–407 (2009)

    Article  CAS  Google Scholar 

  16. Chou, T.-C., Li, Y.-J.: Synthesis and molecular assembly of benzenoid ring-mounted U-shaped septuple-bridged [7,7]orthocyclophanes walled by cofacial quinoxaline rings. Tetrahedron 71, 5620–5633 (2015)

    Article  CAS  Google Scholar 

  17. Kim, S.K., Lim, J.M., Pradhan, T., Jung, H.S., Lynch, V.M., Kim, J.S., Kim, D., Sessler, J.L.: Self-association and nitroaromatic-induced deaggregation of pyrene substituted pyridine amides. J. Am. Chem. Soc. 136, 495–505 (2014)

    Article  CAS  PubMed  Google Scholar 

  18. Colquhoun, H.M., Zhu, Z., Cardin, C.J., Gan, Y., Drew, M.G.B.: Sterically controlled recognition of macromolecular sequence information by molecular tweezers. J. Am. Chem. Soc. 129, 16163–16174 (2007)

    Article  CAS  PubMed  Google Scholar 

  19. Bosquez, M., Cambray, A., Miralrio, A., Castillo, R., Salcedo, R.: Weak bonds between molecular tweezers and their guests. Comput. Theor. Chem. 1115, 335–343 (2017)

    Article  CAS  Google Scholar 

  20. Jaunet-Lahary, T., Jacquemin, D., Legouin, B., Questel, J.-Y.Le, Cupif, J.-F., Toupet, L., Uriac, P., Graton, J.: Dissymmetric molecular tweezers in host-guest complexes: internal or external complexation? J. Phys. Chem. C 119, 3771–3779 (2015)

    Article  CAS  Google Scholar 

  21. Legouin, B., Uriac, P., Tomasi, S., Toupet, L., Bondon, A., van de Weghe, P.: Novel chiral molecular tweezer from. Org. Lett. 11, 745–748 (2009)

    Article  CAS  PubMed  Google Scholar 

  22. Graton, J., Legouin, B., Besseau, F., Uriac, P., Le Questel, J.Y., Van De Weghe, P., Jacquemin, D.: Molecular tweezers in host—guest complexes: a computational study through a DFT—D approach. J. Phys. Chem. C 116, 23067–23074 (2012)

    Article  CAS  Google Scholar 

  23. Legouin, B., Gayral, M., Uriac, P., Cupif, J.F., Levoin, N., Toupet, L., Van De Weghe, P.: Molecular tweezers: synthesis and formation of host-guest complexes. Eur. J. Org. Chem. 2010, 5503–5508 (2010)

    Article  Google Scholar 

  24. Klarner, F.-G., Nellesen, A., Zienau, J., Ochsenfeld, C., Schrader, T.: Molecular tweezer and clip in aqueous solution: unexpected self-assembly, powerful host—guest complex formation, quantum chemical 1H NMR shift calculation. J. Am. Chem. Soc. 128, 4831–4841 (2006)

    Article  PubMed  Google Scholar 

  25. Hunter, C.A.: The role of aromatic interactions in molecular recognition. Chem. Soc. Rev. 23, 101 (1994)

    Article  CAS  Google Scholar 

  26. Kamieth, M., Klärner, F.-G., Diederich, F.: Modeling the supramolecular properties of aliphatic-aromatic hydrocarbons with convex-concave topology. Angew. Chem. Int. Ed. 37, 3303–3306 (1998)

    Article  CAS  Google Scholar 

  27. Corbel, J.-C., Uriac, P., Huet, J., Martin, C.A.E., Advenier, A.: 1-Benzazepine derivatives acting as ATP-dependent potassium-channels antagonists. Eur. J. Med. Chem. 30(1), 3–13 (1995)

    Article  CAS  Google Scholar 

  28. Tobe, Y., Naemura, K.: A new entry to [6](1,4)naphthalenophane and [6](1,4)anthracenophane: synthesis of peri-substituted derivatives. Tetrahedron Lett. 36, 939–942 (1995)

    Article  CAS  Google Scholar 

  29. Nishio, M., Umezawa, Y., Hirota, M., Takeuchi, Y.: The CH/p interaction: significance in molecular recognition. Tetrahedron 51, 8665–8701 (1995)

    Article  CAS  Google Scholar 

  30. Stumpfe, D., Bajorath, J.: Exploring activity cliffs in medicinal chemistry. J. Med. Chem. 55, 2932–2942 (2012)

    Article  CAS  PubMed  Google Scholar 

  31. Stumpfe, D., Hu, Y., Dimova, D., Bajorath, J.: Recent progress in understanding activity cliff s and their utility in medicinal chemistry. J. Med. Chem. 57, 18–28 (2014)

    Article  CAS  PubMed  Google Scholar 

  32. Neel, A.J., Hilton, M.J., Sigman, M.S., Toste, F.D.: Review exploiting non-covalent π interactions for catalyst design. Nature 543, 637–646 (2017)

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  33. A free software for NMR analysis of molecular systems undergoing chemical exchange, Mestrelab Research, Chemistry Software solutions. https://mestrelab.com/software/freeware/

  34. Lahore, S., Narkhede, U., Merlini, L., Dallavalle, S.: Total synthesis of the natural product benzo[j]fluoranthene-4,9-diol: an approach to the synthesis of oxygenated benzo[j]fluoranthenes. J. Org. Chem. 78, 10860–10866 (2013)

    Article  CAS  PubMed  Google Scholar 

  35. Sun, Z., Huang, K., Wu, J.: Soluble and stable zethrenebis (dicarboximide) and its quinone. Org. Lett. 12, 4690–4693 (2010)

    Article  CAS  PubMed  Google Scholar 

Download references

Acknowledgements

The authors Pr D. Jacquemin and Dr J. Graton (CEISAM, Nantes, France) for fruitful discussions, Dr P. Jéhan (SCANMAT, Rennes, France) for mass spectrometry and Dr N. Levoin (Bioprojet-Biotech, France) for charge calculations. We are most grateful to the PRISM core facility (Rennes-Angers, France) for NMR spectrometer access.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Béatrice Legouin.

Additional information

Publisher's Note

Springer Nature remains neutral with regard to jurisdictional claims in published maps and institutional affiliations.

Electronic supplementary material

Below is the link to the electronic supplementary material.

Supplementary material 1 (DOCX 5811 kb)

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Legouin, B., Bondon, A., Orione, C. et al. Study of the self-association of molecular tweezers bearing two different arms: influence of the stereoelectronic effects of the arm substituents. J Incl Phenom Macrocycl Chem 96, 101–109 (2020). https://doi.org/10.1007/s10847-019-00954-2

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s10847-019-00954-2

Keywords

Navigation