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The complete S RNA and M RNA nucleotide sequences of a hippeastrum chlorotic ringspot virus (HCRV) isolate from Hymenocallis littoralis (Jacq.) Salisb in China

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Abstract

An isolate of hippeastrum chlorotic ringspot virus (HCRV) named HLS1-2, causing necrotic spots on leaves of spider lily, was obtained and characterized in China. The complete S RNA and M RNAs of the HLS1-2 isolate are 2724 nt and 4741 nt in length, respectively. The HLS1-2 S RNA sequence is most closely related to that of HCRV, with 99 % identity. Viral proteins encoded by the M RNA are closely related to those of tomato yellow ring virus (TYRV), polygonum ringspot virus (PolRSV) and iris yellow spot virus (IYSV). Phylogenetic trees for the four viral proteins encoded by the S and M RNAs placed HCRV-HLS1-2 in a distinct cluster with IYSV, TYRV and PolRSV and provided further support for the subdivision of tospoviruses into American and Eurasian groups.

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Acknowledgments

This work was supported by National Science Foundation of China (No. 31260451 & 30960224) and a Project on Social Development by Department of Science and Technology of Yunnan Province.

Conflict of interest

The authors declare that they have no conflict of interest.

Author information

Authors and Affiliations

  1. College of Agronomy and Biotechnology, Yunnan Agricultural University, Kunming, 650201, China

    Ye Xu, Shi-gao Lou, Wen-cheng Wang & Ya-ting Liu

  2. Institute of Food Crops, Yunnan Academy of Agricultural Sciences, Kunming, 650205, China

    Xiao-lin Li

  3. Yunnan Main Food Crop Seed Processing Technology Centre, Kunming, 650205, China

    Xiao-lin Li

  4. China National Tobacco Corporation Yunnan Province Company, Lincang Branch, Lincang, 677099, China

    Yuan-xian Zheng

Authors
  1. Ye Xu
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  2. Shi-gao Lou
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  3. Xiao-lin Li
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  4. Yuan-xian Zheng
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  5. Wen-cheng Wang
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  6. Ya-ting Liu
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Corresponding author

Correspondence to Ya-ting Liu.

Additional information

The nucleotide sequence data reported in this manuscript have been deposited at the NCBI/GeneBank under accession no. JX833564 and JX833565.

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Xu, Y., Lou, Sg., Li, Xl. et al. The complete S RNA and M RNA nucleotide sequences of a hippeastrum chlorotic ringspot virus (HCRV) isolate from Hymenocallis littoralis (Jacq.) Salisb in China. Arch Virol 158, 2597–2601 (2013). https://doi.org/10.1007/s00705-013-1756-x

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  • DOI: https://doi.org/10.1007/s00705-013-1756-x

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