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Differential levels of genetic diversity and divergence among populations of an ancient Australian rainforest conifer, Araucaria cunninghamii

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Abstract

Historical fragmentation and subsequent isolation has affected the levels of genetic diversity in many lineages of ancient plant taxa. This study investigated the effects of historical processes on Araucaria cunninghamii (Hoop Pine), Araucariaceae, using both RAPD and ISSR markers. While most populations maintain moderate levels of diversity, there is some evidence for reduced genetic variation. Most sampled populations are significantly differentiated from each other, thereby emphasizing the high degree of population structuring in A. cunninghamii. Increased divergence among the northern Queensland populations relative to southern Queensland populations suggests historical pressures have impacted differently on extant population distribution. More research is specifically required into the biology and population demographics of Australian Araucariaceae.

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References

  • Allnutt TR, Newton AC, Lara A, Premoli A, Armesto JJ, Vergara R, Gardner M (1999) Genetic variation in Fitzroya cupressoides (alerce), a threatened South American conifer. Mol Ecol 8:975–987

    Article  PubMed  CAS  Google Scholar 

  • Allnutt TR, Newton AC, Premoli A, Lara A (2003) Genetic variation in the threatened South American conifer Pilgerodendron uviferum (Cupressaceae), detected using RAPD markers. Biol Conserv 114:245–253

    Article  Google Scholar 

  • Bekessy SA, Allnutt TR, Premoli AC, Lara A, Ennos RA, Burgman MA, Cortes M, Newton AC (2002) Genetic variation in the vulnerable and endemic Monkey Puzzle tree, detected using RAPDs. Heredity 88:243–249

    Article  PubMed  CAS  Google Scholar 

  • Dieters MJJ, Nikles DG, Johnson MJ (2002) Genetic improvement of conservation: a case study of Araucaria cunninghamii. In: Advances in genetic improvement of tropical tree species. Centre for Biotechnology and Tree Improvement, Yogyakarta

  • Doyle JJ, Doyle JL (1987) A rapid isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 19:11–15

    Google Scholar 

  • Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes: applications to human mitochondrial DNA restriction data. Genetics 131:479–491

    PubMed  CAS  Google Scholar 

  • Hamrick JL, Godt MJW (1996) Conservation genetics of endemic plant species. In: Avise JC, Hamrick JL (eds) Conservation genetics. Case histories from nature. Chapman and Hall, New York, pp 281–304

    Google Scholar 

  • Hill KD (1998) Pinophyta. In: Flora of Australia volume 48: ferns, gymnosperms and allied groups. CSIRO, Australia, pp 545–596

  • Kershaw P, Wagstaff B (2001) The southern conifer family Araucariaceae: history, status, and value for paleoclimatic reconstruction. Annu Rev Ecol Syst 32:397–414

    Article  Google Scholar 

  • Koenig WD, Ashley MV (2003) Is pollen limited? The answer is blowing in the wind. Trends Ecol Evol 18:157–159

    Article  Google Scholar 

  • Lewontin RC (1972) The apportionment of human diversity. Evol Biol 6:381–398

    Google Scholar 

  • Nei M (1973) Analysis of gene diversity in subdivided populations. Proc Natl Acad Sci Biol 70:3321–3323

    Article  CAS  Google Scholar 

  • Nybom H (2004) Comparison of different nuclear DNA markers for estimating intraspecific genetic diversity in plants. Mol Ecol 13:1143–1155

    Article  PubMed  CAS  Google Scholar 

  • Nybom H, Bartish IV (2000) Effects of life history traits and sampling strategies on genetic diversity estimates obtained with RAPD markers in plants. Perspect Plant Ecol 3(2):93–114

    Article  Google Scholar 

  • Peakall R, Smouse PE (2001) GenAlEx V5: genetic analysis in Excel. Population genetic software for teaching and research. Australian National University, Canberra. http://www.anu.edu.au/BoZo/GenAlEx/

  • Peakall R, Ebert D, Scott L, Meagher P, Offord C (2003) Comparative genetic study confirms exceptionally low genetic variation in the ancient and endangered relictual conifer, Wollemia nobilis (Araucariaceae). Mol Ecol 12:2331–2343

    Article  PubMed  CAS  Google Scholar 

  • Petrie CC (1904) Tom Petrie’s reminiscences of early Queensland. University of Queensland Press, Brisbane

    Google Scholar 

  • Pluess AR, Stöcklin J (2004) Genetic diversity and fitness in Scabiosa columbaria in the Swiss Jura in relation to population size. Conserv Genet 5:145–156

    Article  CAS  Google Scholar 

  • Pole MS (2000) Mid Cretaceous conifers from the Eromanga Basin, Australia. Aust Syst Bot 13:153–197

    Article  Google Scholar 

  • Pye MG, Gadek PA (2004) Genetic diversity, differentiation and conservation in Araucaria bidwillii (Araucariaceae), Australia’s Bunya pine. Conserv Genet 5(5):619–629

    Article  CAS  Google Scholar 

  • Pye MG, Gadek PA, Edwards KJ (2003) Diversity, divergence and species of the Australasian Callitris (Cupressaceae) and allied genera: evidence from ITS sequence data. Aust Syst Bot 16(4):505–514

    Article  Google Scholar 

  • Schaal B, Leverich WJ (1996) Molecular variation in isolated plant populations. Plant Spec Biol 11:33–40

    Article  Google Scholar 

  • Schneider S, Roessli D, Excoffier L (2000) Arlequin ver. 2.000: a software for population genetics analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland

    Google Scholar 

  • Setoguchi H, Osawa TA, Pintaud J-C, Jaffré T, Veillon J-M (1998) Phylogenetic relationships within Araucariaceae based on rbcL gene sequences. Am J Bot 85(11):1507–1516

    Article  CAS  Google Scholar 

  • Sousa VA, Hattemer HH (2003) Pollen dispersal and gene flow by pollen in Araucaria angustifolia. Aust J Bot 51:309–317

    Article  Google Scholar 

  • Stockey RA (1994) Mesozoic Araucariaceae: morphology and systematic relationships. J Plant Res 107:493–502

    Article  Google Scholar 

  • Yeh FC, Yang R, Boyle T (1999) PopGene Ver. 1.31. University of Alberta, Canada

  • Zar JH (1996) Biostatistical analysis, 3rd edn. Prentice Hall, New Jersey

    Google Scholar 

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Acknowledgments

We are extremely grateful for the assistance provided by the Environmental Protection Agency of Queensland, especially Bunya Mountains National Park staff, during M. Pye’s stay for sample collections. Michelle Waycott provided valuable assistance for the optimisation of the RAPD procedure and the formation of ISSR protocols. We thank Adella Edwards for the preparation of the figure of sampled Hoop Pine localities. We also thank Dr. Garth Nikles for insightful discussions regarding the history of Hoop Pine plantations in Australia. This research was supported by funds from the Australian Postgraduate Award, Rainforest CRC, Cairns and the School of Tropical Biology, James Cook University, Cairns. This forms part of a larger project examining the response of Australian Araucaria spp. to historical climate change.

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Correspondence to Matthew G. Pye.

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Pye, M.G., Henwood, M.J. & Gadek, P.A. Differential levels of genetic diversity and divergence among populations of an ancient Australian rainforest conifer, Araucaria cunninghamii . Plant Syst Evol 277, 173–185 (2009). https://doi.org/10.1007/s00606-008-0120-1

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