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Cryo-electron Microscopy of Vitreous Sections

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Book cover Electron Microscopy

Part of the book series: Methods in Molecular Biology ((MIMB,volume 1117))

Abstract

More than 30 years ago two groups independently reported the vitrification of pure water, which was until then regarded as impossible without a cryoprotectant [1, 2]. This opened the opportunity to cryo-electron microscopy (cryo-EM) to observe biological samples at nanometer scale, close to their native state. However, poor electron penetration through biological samples sets the limit for sample thickness to less than the average size of the mammalian cell. In order to image bulky specimens at the cell or tissue level in transmission electron microscopy (TEM), a sample has to be either thinned by focused ion beam or mechanically sectioned. The latter technique, Cryo-Electron Microscopy of Vitreous Section (CEMOVIS), employs cryo-ultramicrotomy to produce sections with thicknesses of 40–100 μm of vitreous biological material suitable for cryo-EM. CEMOVIS consists of trimming and sectioning a sample with a diamond knife, placing and attaching the section onto an electron microscopy grid, transferring the grid to the cryo-electron microscope and imaging. All steps must be carried on below devitrification temperature to obtain successful results. In this chapter we provide a step-by-step guide to produce and image vitreous sections of a biological sample.

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References

  1. Bruggeller P, Mayer E (1980) Complete vitrification in pure liquid water and dilute aqueous-solutions. Nature 288:569–571

    Article  Google Scholar 

  2. Dubochet J, Mcdowall AW (1981) Vitrification of pure water for electron-microscopy. J Microsc (Oxford) 124:Rp3–Rp4

    Article  Google Scholar 

  3. Al-Amoudi A, Norlen LPO, Dubochet J (2004) Cryo-electron microscopy of vitreous sections of native biological cells and tissues. J Struct Biol 148:131–135

    Article  CAS  PubMed  Google Scholar 

  4. Al-Amoudi A, Chang JJ, Leforestier A et al (2004) Cryo-electron microscopy of vitreous sections. EMBO J 23:3583–3588

    Article  CAS  PubMed  Google Scholar 

  5. Al-Amoudi A, Dubochet J, Studer D (2002) Amorphous solid water produced by cryosectioning of crystalline ice at 113 K. J Microsc (Oxford) 207:146–153

    Article  CAS  Google Scholar 

  6. Al-Amoudi A, Studer D, Dubochet J (2005) Cutting artefacts and cutting process in vitreous sections for cryo-electron microscopy. J Struct Biol 150:109–121

    Article  CAS  PubMed  Google Scholar 

  7. Hsieh CE, Leith A, Mannella CA et al (2006) Towards high-resolution three-dimensional imaging of native mammalian tissue: electron tomography of frozen-hydrated rat liver sections. J Struct Biol 153:1–13

    Article  CAS  PubMed  Google Scholar 

  8. Hsieh CE, Marko M, Frank J et al (2002) Electron tomographic analysis of frozen-hydrated tissue sections. J Struct Biol 138:63–73

    Article  PubMed  Google Scholar 

  9. Norlen L, Oktem O, Skoglund U (2009) Molecular cryo-electron tomography of vitreous tissue sections: current challenges. J Microsc (Oxford) 235:293–307

    Article  CAS  Google Scholar 

  10. Pierson J, Fernandez JJ, Bos E et al (2010) Improving the technique of vitreous cryo-sectioning for cryo-electron tomography: electrostatic charging for section attachment and implementation of an anti-contamination glove box. J Struct Biol 169:219–225

    Article  PubMed  Google Scholar 

  11. Pierson J, Ziese U, Sani M et al (2011) Exploring vitreous cryo-section-induced compression at the macromolecular level using electron cryo-tomography; 80S yeast ribosomes appear unaffected. J Struct Biol 173:345–349

    Article  CAS  PubMed  Google Scholar 

  12. Sader K, Studer D, Zuber B et al (2009) Preservation of high resolution protein structure by cryo-electron microscopy of vitreous sections. Ultramicroscopy 110:43–47

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  13. Al-Amoudi A, Diez DC, Betts MJ et al (2007) The molecular architecture of cadherins in native epidermal desmosomes. Nature 450:832–837

    Article  CAS  PubMed  Google Scholar 

  14. Gruska M, Medalia O, Baumeister W et al (2008) Electron tomography of vitreous sections from cultured mammalian cells. J Struct Biol 161:384–392

    Article  CAS  PubMed  Google Scholar 

  15. Al-Amoudi A, Dubochet J, Gnaegi H et al (2003) An oscillating cryo-knife reduces cutting-induced deformation of vitreous ultrathin sections. J Microsc (Oxford) 212:26–33

    Article  CAS  Google Scholar 

  16. Kukulski W, Schorb M, Welsch S et al (2011) Correlated fluorescence and 3D electron microscopy with high sensitivity and spatial precision. J Cell Biol 192:111–119

    Article  CAS  PubMed  Google Scholar 

  17. Masich S, Ostberg T, Norlen L et al (2006) A procedure to deposit fiducial markers on vitreous cryo-sections for cellular tomography. J Struct Biol 156:461–468

    Article  CAS  PubMed  Google Scholar 

  18. Dubochet J, Zuber B, Eltsov M et al (2007) How to “read” a vitreous section. Methods Cell Biol 79:385–406

    Article  CAS  PubMed  Google Scholar 

  19. Blanc NS, Studer D, Ruhl K et al (1998) Electron beam-induced changes in vitreous sections of biological samples. J Microsc (Oxford) 192:194–201

    Article  Google Scholar 

  20. Aronova MA, Sousa AA, Leapman RD (2011) EELS characterization of radiolytic products in frozen samples. Micron 42:252–256

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  21. Quispe J, Damiano J, Mick SE et al (2007) An improved holey carbon film for cryo-electron microscopy. Microsc Microanal 13:365–371

    Article  CAS  PubMed  Google Scholar 

  22. Ermantraut E, Wohlfart K, Tichelaar W (1998) Perforated support foils with pre-defined hole size, shape and arrangement. Ultramicroscopy 74:75–81

    Article  CAS  Google Scholar 

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Acknowledgements

We are grateful to Gérard Pehau-Arnaudet for taking photographs for Figs. 1, 2, 3, 4, 5, 6, 7, and 8 and to Gregory M. Becker (RMC Products) and Mark A. Kukucka (Leica Microsystems Inc.) for providing photographs for Figs. 1a, b and 8a, b, respectively.

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Chlanda, P., Sachse, M. (2014). Cryo-electron Microscopy of Vitreous Sections. In: Kuo, J. (eds) Electron Microscopy. Methods in Molecular Biology, vol 1117. Humana Press, Totowa, NJ. https://doi.org/10.1007/978-1-62703-776-1_10

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  • DOI: https://doi.org/10.1007/978-1-62703-776-1_10

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  • Publisher Name: Humana Press, Totowa, NJ

  • Print ISBN: 978-1-62703-775-4

  • Online ISBN: 978-1-62703-776-1

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