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Recombinant Reconstitution of Sumoylation Reactions In Vitro

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Part of the book series: Methods in Molecular Biology ((MIMB,volume 832))

Abstract

Reconstituting posttranslational modification with SUMO in vitro is an essential tool in the analysis of sumoylation. In this article, we provide detailed protocols that allow to set up and perform sumoylation reactions using a purified recombinant sumoylation machinery. The protocols include purification of the SUMO E1 enzyme His-Aos1/Uba2, untagged E2 enzyme Ubc9, untagged SUMO, and the RanBP2 E3 ligase fragment IR1 + M. Using these components, we provide step-by-step instructions to set up sumoylation reactions. Two established SUMO model substrates, His-RanGAPtail and HisYFP-Sp100, complement the described tool box; these proteins serve as positive controls in E3 ligase-independent and -dependent sumoylation reactions and are valuable instruments to adjust the reaction conditions if necessary.

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References

  1. Geiss-Friedlander R, Melchior F (2007) Concepts in sumoylation: a decade on. Nat Rev Mol Cell Biol 8:947–956.

    Article  PubMed  CAS  Google Scholar 

  2. Gareau JR, Lima CD (2010) The SUMO pathway: emerging mechanisms that shape specificity, conjugation and recognition. Nat Rev Mol Cell Biol 11:861–871.

    Article  PubMed  CAS  Google Scholar 

  3. Mencia M, de Lorenzo V (2004) Functional transplantation of the sumoylation machinery into Escherichia coli. Protein Expr Purif 37:409–418.

    Article  PubMed  CAS  Google Scholar 

  4. Uchimura Y, Nakao M, Saitoh H (2004) Generation of SUMO-1 modified proteins in E. coli: towards understanding the biochemistry/structural biology of the SUMO-1 pathway. FEBS Lett 564:85–90.

    Article  PubMed  CAS  Google Scholar 

  5. Langereis MA, Rosas-Acosta G, Mulder K, Wilson VG (2007) Production of sumoylated proteins using a baculovirus expression system. J Virol Methods 139:189–194.

    Article  PubMed  CAS  Google Scholar 

  6. Desterro JM, Rodriguez MS, Hay RT (1998) SUMO-1 modification of IkappaBalpha inhibits NF-kappaB activation. Mol Cell 2:233–239.

    Article  PubMed  CAS  Google Scholar 

  7. Werner A, Moutty MC, Moller U, Melchior F (2009) Performing in vitro sumoylation reactions using recombinant enzymes. Methods Mol Biol 497:187–199.

    Article  PubMed  CAS  Google Scholar 

  8. Pichler A, Knipscheer P, Saitoh H et al (2004) The RanBP2 SUMO E3 ligase is neither HECT- nor RING-type. Nat Struct Mol Biol 11:984–991.

    Article  PubMed  CAS  Google Scholar 

  9. Reverter D, Lima CD (2005) Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex. Nature 435:687–692.

    Article  PubMed  CAS  Google Scholar 

  10. Seeler JS, Marchio A, Sitterlin D et al (1998) Interaction of SP100 with HP1 proteins: a link between the promyelocytic leukemia-associated nuclear bodies and the chromatin compartment. Proc Natl Acad Sci U S A 95:7316–7321.

    Article  PubMed  CAS  Google Scholar 

  11. Pichler A, Knipscheer P, Oberhofer E et al (2005) SUMO modification of the ubiquitin-conjugating enzyme E2-25 K. Nat Struct Mol Biol 12:264–269.

    Article  PubMed  CAS  Google Scholar 

  12. Schmidt D, Muller S (2002) Members of the PIAS family act as SUMO ligases for c-Jun and p53 and repress p53 activity. Proc Natl Acad Sci U S A 99:2872–2877.

    Article  PubMed  CAS  Google Scholar 

  13. Meulmeester E, Kunze M, Hsiao HH et al (2008) Mechanism and consequences for paralog-specific sumoylation of ubiquitin-specific protease 25. Mol Cell 30:610–619.

    Article  PubMed  CAS  Google Scholar 

  14. Zhu J, Zhu S, Guzzo CM et al (2008) Small ubiquitin-related modifier (SUMO) binding determines substrate recognition and paralog-selective SUMO modification. J Biol Chem 283:29405–29415.

    Article  PubMed  CAS  Google Scholar 

  15. Fernandez-Miranda G, de Castro IP, Carmena M et al (2010) SUMOylation modulates the function of Aurora-B kinase. J Cell Sci 123:2823–2833.

    Article  PubMed  CAS  Google Scholar 

  16. Hietakangas V, Anckar J, Blomster HA et al (2006) PDSM, a motif for phosphorylation-dependent SUMO modification. Proc Natl Acad Sci U S A 103:45–50.

    Article  PubMed  CAS  Google Scholar 

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Acknowledgments

We are grateful to Nicolas Stankovic-Valentin for critical reading of the manuscript, Anja Schreieck for excellent assistance in establishing the improved version of the E1 purification procedure, Tina Lampe for cloning HisYFP-Sp100, and all lab members for sharing reagents and their experience. The group acknowledges funding from the DFG (SFB 523, GRK 1188) and the EU (NoE Rubicon).

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Correspondence to Frauke Melchior .

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Flotho, A., Werner, A., Winter, T., Frank, A.S., Ehret, H., Melchior, F. (2012). Recombinant Reconstitution of Sumoylation Reactions In Vitro. In: Dohmen, R., Scheffner, M. (eds) Ubiquitin Family Modifiers and the Proteasome. Methods in Molecular Biology, vol 832. Humana Press. https://doi.org/10.1007/978-1-61779-474-2_5

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  • DOI: https://doi.org/10.1007/978-1-61779-474-2_5

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  • Publisher Name: Humana Press

  • Print ISBN: 978-1-61779-473-5

  • Online ISBN: 978-1-61779-474-2

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