Skip to main content

Quantitation of Cellular Components in Cryptococcus neoformans for System Biology Analysis

  • Protocol
  • First Online:

Part of the book series: Methods in Molecular Biology ((MIMB,volume 734))

Abstract

Methods and procedures in molecular biology used to study fungal pathogenesis have significantly improved during the last decade. In this chapter, we provide step-by-step procedures for performing genetics and biochemical studies in the human pathogenic fungal microorganism Cryptococcus neoformans (Cn). These methods are employed for studying the pathobiology of Cn and for experimental validation of theoretical models of fungal pathogenicity.

This is a preview of subscription content, log in via an institution.

Buying options

Protocol
USD   49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD   84.99
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD   159.00
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD   109.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Learn about institutional subscriptions

Springer Nature is developing a new tool to find and evaluate Protocols. Learn more

References

  1. Harrison, T. S. (2009) The burden of HIV-associated cryptococcal disease. AIDS 23, 531–2.

    Google Scholar 

  2. Park, B. J., Wannemuehler, K. A., Marston, B. J., Govender, N., Pappas, P. G., and Chiller, T. M. (2009) Estimation of the current global burden of cryptococcal meningitis among persons living with HIV/AIDS. AIDS 23, 525–30.

    Google Scholar 

  3. Hajjeh, R. A., Conn, L. A., Stephens, D. S., Baughman, W., Hamill, R., Graviss, E., Pappas, P. G., Thomas, C., Reingold, A., Rothrock, G., Hutwagner, L. C., Schuchat, A., Brandt, M. E., and Pinner, R. W. (1999) Cryptococcosis: population-based multistate active surveillance and risk factors in human immunodeficiency virus-infected persons. Cryptococcal Active Surveillance Group. J Infect Dis 179, 449–54.

    Google Scholar 

  4. Kaplan, M. H., Rosen, P. P., and Armstrong, D. (1977) Cryptococcosis in a cancer hospital: clinical and pathological correlates in forty-six patients. Cancer 39, 2265–74.

    Google Scholar 

  5. White, M., Cirrincione, C., Blevins, A., and Armstrong, D. (1992) Cryptococcal meningitis: outcome in patients with AIDS and patients with neoplastic disease. J Infect Dis 165, 960–3.

    Google Scholar 

  6. Kohno, S., Varma, A., Kwon-Chung, K. J., and Hara, K. (1994) Epidemiology studies of clinical isolates of Cryptococcus neoformans of Japan by restriction fragment length polymorphism. Kansenshogaku Zasshi 68, 1512–7.

    Google Scholar 

  7. Shaariah, W., Morad, Z., and Suleiman, A. B. (1992) Cryptococcosis in renal transplant recipients. Transplant Proc 24, 1898–9.

    Google Scholar 

  8. Husain, S., Wagener, M. M., and Singh, N. (2001) Cryptococcus neoformans infection in organ transplant recipients: variables influencing clinical characteristics and outcome. Emerg Infect Dis 7, 375–81.

    Google Scholar 

  9. Fraser, J. A., Giles, S. S., Wenink, E. C., Geunes-Boyer, S. G., Wright, J. R., Diezmann, S., Allen, A., Stajich, J. E., Dietrich, F. S., Perfect, J. R., and Heitman, J. (2005) Same-sex mating and the origin of the Vancouver Island Cryptococcus gattii outbreak. Nature 437, 1360–4.

    Google Scholar 

  10. Seaton, R. A., Verma, N., Naraqi, S., Wembri, J. P., and Warrell, D. A. (1997) Visual loss in immunocompetent patients with Cryptococcus neoformans var. gattii meningitis. Trans R Soc Trop Med Hyg 91, 44–9.

    Google Scholar 

  11. Seaton, R. A., Naraqi, S., Wembri, J. P., and Warrell, D. A. (1996) Predictors of outcome in Cryptococcus neoformans var. gattii meningitis. Qjm 89, 423–8.

    Google Scholar 

  12. Findley, K., Rodriguez-Carres, M., Metin, B., Kroiss, J., Fonseca, A., Vilgalys, R., and Heitman, J. (2009) Phylogeny and phenotypic characterization of pathogenic Cryptococcus species and closely related saprobic taxa in the Tremellales. Eukaryot Cell 8, 353–61.

    Google Scholar 

  13. Perfect, J. R. (2005) Cryptococcus neoformans: a sugar-coated killer with designer genes. FEMS Immunol Med Microbiol 45, 395–404.

    Google Scholar 

  14. Casadevall, A., and Perfect, J. R. (1998) Cryptococcus neoformans, ASM Press, Washington, DC, 381–405.

    Google Scholar 

  15. Hull, C. M., and Heitman, J. (2002) Genetics of Cryptococcus neoformans. Annu Rev Genet 36, 557–615.

    Google Scholar 

  16. Toffaletti, D. L., Rude, T. H., Johnston, S. A., Durack, D. T., and Perfect, J. R. (1993) Gene transfer in Cryptococcus neoformans by use of biolistic delivery of DNA. J. Bacteriol. 175, 1405–11.

    Google Scholar 

  17. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989) Molecular cloning: a laboratory manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York.

    Google Scholar 

  18. Baker, L. G., Specht, C. A., Donlin, M. J., and Lodge, J. K. (2007) Chitosan, the deacetylated form of chitin, is necessary for cell wall integrity in Cryptococcus neoformans. Eukaryot Cell 6, 855–67.

    Google Scholar 

  19. Mandala, S. M., Thornton, R. A., Frommer, B. R., and et al. (1995) The discovery of australifungin, a novel inhibitor of sphinganine N-acyltransferase from Sporormiella australis. Producing organism, fermentation, isolation, and biological activity. J. Antibiot. (Tokyo) 48, 349–56.

    Google Scholar 

  20. Luberto, C., Toffaletti, D. L., Wills, E. A., Tucker, S. C., Casadevall, A., Perfect, J. R., Hannun, Y. A., and Del Poeta, M. (2001) Roles for inositol-phosphoryl ceramide synthase 1 (IPC1) in pathogenesis of C. neoformans. Genes Dev. 15, 201–12.

    Google Scholar 

  21. Fischl, A. S., Liu, Y., Browdy, A., and Cremesti, A. E. (2000) Inositolphosphoryl ceramide synthase from yeast. Methods Enzymol. 311, 123–30.

    Google Scholar 

  22. Bielawski, J., Pierce, J. S., Snider, J., Rembiesa, B., Szulc, Z. M., and Bielawska, A. (2009) Comprehensive quantitative analysis of bioactive sphingolipids by high-performance liquid chromatography-tandem mass spectrometry. Methods Mol Biol 579, 443–67.

    Google Scholar 

  23. Bielawski, J., Szulc, Z. M., Hannun, Y. A., and Bielawska, A. (2006) Simultaneous quantitative analysis of bioactive sphingolipids by high-performance liquid chromatography-tandem mass spectrometry. Methods 39, 82–91.

    Google Scholar 

  24. Hanson, B. A., and Lester, R. L. (1980) The extraction of inositol-containing phospholipids and phosphatidylcholine from Saccharomyces cerevisiae and Neurospora crassa. J Lipid Res 21, 309–15.

    Google Scholar 

Download references

Acknowledgments

This work was supported by Grants AI56168 and AI72142 (to M.D.P) and was conducted in a facility constructed with support from the National Institutes of Health, Grant Number C06 RR015455 from the Extramural Research Facilities Program of the National Center for Research Resources. Dr. Maurizio Del Poeta is a Burroughs Wellcome New Investigator in Pathogenesis of Infectious Diseases.

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Maurizio Del Poeta .

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

© 2011 Springer Science+Business Media, LLC

About this protocol

Cite this protocol

Singh, A., Qureshi, A., Del Poeta, M. (2011). Quantitation of Cellular Components in Cryptococcus neoformans for System Biology Analysis. In: Becskei, A. (eds) Yeast Genetic Networks. Methods in Molecular Biology, vol 734. Humana Press. https://doi.org/10.1007/978-1-61779-086-7_16

Download citation

  • DOI: https://doi.org/10.1007/978-1-61779-086-7_16

  • Published:

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-61779-085-0

  • Online ISBN: 978-1-61779-086-7

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics