Biotic stress inducible promoters in crop plants- a review
Keywords:
Biotic stress-inducible promoter, promoters, , agriculture cropsAbstract
Promoter is a DNA sequence that regulates the expression of a particular gene. They are classified on the basis of their function and spatio-temporal expression into constitutive, tissue-specific or development-stage-specific and inducible promoters. Plant genes associated with defence responses are activated by stress-factors and these genes are known to be regulated by promoters or the upstream elements. Promoters induced by abiotic stress factors in plants are fairly well studied compared to biotic stresses. This review presented information generated on promoters and regulatory elements involved in defence gene expression due to insect damage, pathogen and nematode attack to crop plants, mechanism and their utilization in crop improvement through genetic engineering.
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References
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An G. 1990. Nopaline Synthase Promoter Is Wound Inducible and Auxin Inducible. the Plant Cell Online 2, 225–233.
An G, Mitra A, Choi HK, Costa MA, An K, Thornburg RW & Ryan CA. 1989. Functional Analysis of the 3’ Control Region of the Potato Wound-Inducible Proteinase Inhibitor II Gene. The Plant Cell 1, 115–122.
Banerjee S, Banerjee A, Gill SS, Gupta OP, Dahuja A, Jain PK & Sirohi A. 2017. RNA Interference: A Novel Source of Resistance to Combat Plant Parasitic Nematodes. Frontiers in Plant Science 8.
Bernard V, Brunaud V & Lecharny A. 2010. TC-motifs at the TATA-box expected position in plant genes: a novel class of motifs involved in the transcription regulation. BMC genomics, 11: 166.
Biłas R, Szafran K, Hnatuszko-konka K & Kononowicz AK. 2016. Cis -regulatory elements used to control gene expression in plants. Plant Cell, Tissue and Organ Culture (PCTOC), 127: 269-287.
Buratowski S, Hahn S, Guarente L & Sharp PA. 1989. Five intermediate complexes in transcription initiation by RNA polymerase II. Cell, 56: 549-561.
Cao J, Shelton AM & Earle ED. 2001. Gene expression and insect resistance in transgenic broccoli containing a Bacillus thuringiensis cry1Ab gene with the chemically inducible PR-1a promoter. Molecular Breeding, 8: 207-216.
Chujo T, Takai R & Akimoto-Tomiyama C. 2007. Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice. Biochimica et Biophysica Acta - Gene Structure and Expression, 1769: 497–505.
Das A, Soubam D, Singh PK, Thakur S, Singh NK & Sharma TR. 2012. A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae. Functional and Integrative Genomics, 12: 215-228.
Dey N, Sarkar S, Acharya S & Maiti IB. 2015. Synthetic promoters in planta. Planta, 242: 1077-1094.
Escobar C, Barcala M, Portillo M, Almoguera C, Jordano J & Fenoll C. 2003. Induction of the Hahsp17.7G4 promoter by root-knot nematodes: involvement of heat-shock elements in promoter activity in giant cells. Molecular plant-microbe interactions : MPMI, 16: 1062-1068.
Ferry N & Gatehouse AMR. 2010. Transgenic crop plants for resistance to biotic stress. Transgenic Crop Plants,1–65.
Giacomin LT & Szalay AA. 1996. Expression of a PALI promoter luciferase gene fusion in Arabidopsis thaliana in response to infection by phytopathogenic bacteria. Plant Science, 116: 59-72.
Godard KA, Byun-Mckay A, Levasseur C, Plant A, Séguin A & Bohlmann J. 2007. Testing of a heterologous, wound- and insect-inducible promoter for functional genomics studies in conifer defense. Plant Cell Reports, 26: 2083-2090.
Gupta NC, Jain PK, Bhat SR & Srinivasan R. 2012. Upstream sequence of fatty acyl-CoA reductase (FAR6) of Arabidopsis thaliana drives wound-inducible and stem-specific expression. Plant Cell Reports, 31: 839-850.
Gurr SJ & Rushton PJ. 2005. Engineering plants with increased disease resistance: What are we going to express? Trends in Biotechnology, 23: 275-282.
Hernandez-Garcia CM & Finer JJ. 2014. Identification and validation of promoters and cis-acting regulatory elements. Plant Science, 217-218: 109-119.
Kaur P, Samuel DVK & Bansal KC. 2010. Fruit-specific Over-expression of LeEXP1 Gene in Tomato Alters Fruit Texture. Journal of Plant Biochemistry and Biotechnology, 19: 177-183.
Kirsch C, Logemann E, Lippok B, Schmelzer E & Hahlbrock K. 2001. A highly specific pathogen-responsive promoter element from the immediate-early activated CMPG1 gene in Petroselinum crispum. Plant Journal, 26: 217-227.
Kovalchuk N, Li M & Wittek F. 2010. Defensin promoters as potential tools for engineering disease resistance in cereal grains. Plant Biotechnology Journal, 8: 47-64.
Kumar A, Joshi I, Kohli D, Satheesh V, Abdin MZ, Sirohi A, Srinivasan R & Jain PK. 2016. Characterization of root-knot nematode responsive and root-specific promoter containing PIN domain from Arabidopsis thaliana (L.) Heynh. Indian Journal of Genetics and Plant Breeding, 76: 75-83.
Langridge WH, Fitzgerald KJ, Koncz C, Schell J & Szalay AA. 1989. Dual promoter of Agrobacterium tumefaciens mannopine synthase genes is regulated by plant growth hormones. Proceedings of the National Academy of Sciences of the United States of America, 86: 3219-3223.
Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouzé P & Rombauts S. 2002. Plant CARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Research, 30: 325-327.
Lin CH & Chen CY. 2017. The pathogen-inducible promoter of defense-related LsGRP1 gene from Lilium functioning in phylogenetically distinct species of plants. Plant Science, 254: 22-31.
MacIsaac KD & Fraenkel E. 2006. Practical Strategies for Discovering Regulatory DNA Sequence Motifs. PLOS Computational Biology, 2: 36.
Mazarei M, Teplova I, Hajimorad MR & Stewart CN. 2008. Pathogen phytosensing: Plants to report plant pathogens. Sensors, 8: 2628-2641.
Mei C, Qi M, Sheng G & Yang Y. 2006. Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection. Molecular plant-microbe interactions : MPMI, 19: 1127-1137.
Mochida K & Shinozaki K. 2010. Genomics and bioinformatics resources for crop improvement. Plant & cell physiology, 51: 497-523.
Muthusamy SK, Dalal M, Chinnusamy V & Bansal KC. 2016. Differential Regulation of Genes Coding for Organelle and Cytosolic ClpATPases under Biotic and Abiotic Stresses in Wheat. Frontiers in Plant Science, 7: 929.
Muthusamy SK, Dalal M, Chinnusamy V & Bansal KC. 2017. Genome-wide identification and analysis of biotic and abiotic stress regulation of small heat shock protein (HSP20) family genes in bread wheat. Journal of Plant Physiology, 211: 100-113.
Odell JT, Nagy F & Chua NH. 1985. Identification of DNA sequences required for activity of the cauliflower mosaic virus 35S promoter. Nature, 313: 810-812.
Ong C & Corces V. 2011. Enhancer function: new insights into the regulation of tissue-specific gene expression. Nature Reviews Genetics, 12: 283-93.
Pilpel Y, Sudarsanam P & Church GM. 2001. Identifying regulatory networks by combinatorial analysis of promoter elements. Nature genetics, 29: 153-159.
Ramkumar G, Madhav MS, Rama Devi SJS, Manimaran P, Mohan KM, Prasad MS, Balachandran SM, Neeraja CN, Sundaram RM & Viraktamath BC. 2014. Nucleotide diversity of Pita, a major blast resistance gene and identification of its minimal promoter. Gene, 546: 250-256.
Roeder RG. 1996. The role of general initiation factors in transcription by RNA polymerase II. Trends in Biochemical Sciences, 21: 327-335.
Sainsbury S, Bernecky C & Cramer P. 2015. Structural basis of transcription initiation by RNA polymerase II. Nature Reviews Molecular Cell Biology, 16: 129-143.
Sanghera GS, Wani SH, Singh G, Kashyap PL & Singh NB. 2011. Designing crop plants for biotic stresses using transgenic approach. Vegetos, 24: 1-25.
Sasaki K, Yuichi O, Hiraga S, Gotoh Y, Seo S, Mitsuhara I, Ito H, Matsui H & Ohashi Y. 2007. Characterization of two rice peroxidase promoters that respond to blast fungus-infection. Molecular Genetics and Genomics, 278: 709-722.
Shi J, An HL, Zhang L, Gao Z & Guo XQ. 2010. GhMPK7, a novel multiple stress-responsive cotton group C MAPK gene, has a role in broad spectrum disease resistance and plant development. Plant Molecular Biology, 74: 1-17.
Siddique S, Wieczorek K, Szakasits D, Kreil DP & Bohlmann H. 2011. The promoter of a plant defensin gene directs specific expression in nematode-induced syncytia in Arabidopsis roots. Plant Physiology and Biochemistry, 49: 1100-1107.
Srinivasan R & Saha D. 2009. Promoter trapping in plants using T-DNA mutagenesis. Molecular Techniques in Crop Improvement: 2nd Edition, 545-577.
Tang W, Luo X & Samuels V. 2004. Regulated gene expression with promoters responding to inducers. Plant Science, 166: 827-834.
Tiwari S, Mishra DK, Chandrasekhar K, Singh PK & Tuli R. 2011. Expression of δ-endotoxin Cry1EC from an inducible promoter confers insect protection in peanut (Arachis hypogaea L.) plants. Pest Management Science, 67: 137-145.
Vijayan J, Devanna BN, Singh NK & Sharma TR. 2015. Cloning and functional validation of early inducible Magnaporthe oryzae responsive CYP76M7 promoter from rice. Frontiers in plant science, 6: 371.
Will T & Vilcinskas A. 2013. Aphid-proof plants: Biotechnology-based approaches for aphid control. Advances in Biochemical Engineering/Biotechnology,179-203.
Wu J, Yang Z & Wang Y. 2015. Viral-inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA. eLife 4.
Yan L, Zhai Q & Wei J. 2013. Role of Tomato Lipoxygenase D in Wound-Induced Jasmonate Biosynthesis and Plant Immunity to Insect Herbivores. PLoS Genetics, 9.
YANG L mei, Mercke P, van Loon JJ, FANG Z yuan, Dicke M & Jongsma MA. 2008. Expression in Arabidopsis of a Strawberry Linalool Synthase Gene Under the Control of the Inducible Potato PI2 Promoter. Agricultural Sciences in China, 7: 521-534.
Zhu-Salzman K, Salzman RA, Ahn JE & Koiwa H. 2004. Transcriptional regulation of sorghum defense determinants against a phloem-feeding aphid. Plant physiology, 134: 420-431.
Zuo YC & Li QZ. 2011. Identification of TATA and TATA-less promoters in plant genomes by integrating diversity measure, GC-Skew and DNA geometric flexibility. Genomics, 97: 112-120.
An G. 1990. Nopaline Synthase Promoter Is Wound Inducible and Auxin Inducible. the Plant Cell Online 2, 225–233.
An G, Mitra A, Choi HK, Costa MA, An K, Thornburg RW & Ryan CA. 1989. Functional Analysis of the 3’ Control Region of the Potato Wound-Inducible Proteinase Inhibitor II Gene. The Plant Cell 1, 115–122.
Banerjee S, Banerjee A, Gill SS, Gupta OP, Dahuja A, Jain PK & Sirohi A. 2017. RNA Interference: A Novel Source of Resistance to Combat Plant Parasitic Nematodes. Frontiers in Plant Science 8.
Bernard V, Brunaud V & Lecharny A. 2010. TC-motifs at the TATA-box expected position in plant genes: a novel class of motifs involved in the transcription regulation. BMC genomics, 11: 166.
Biłas R, Szafran K, Hnatuszko-konka K & Kononowicz AK. 2016. Cis -regulatory elements used to control gene expression in plants. Plant Cell, Tissue and Organ Culture (PCTOC), 127: 269-287.
Buratowski S, Hahn S, Guarente L & Sharp PA. 1989. Five intermediate complexes in transcription initiation by RNA polymerase II. Cell, 56: 549-561.
Cao J, Shelton AM & Earle ED. 2001. Gene expression and insect resistance in transgenic broccoli containing a Bacillus thuringiensis cry1Ab gene with the chemically inducible PR-1a promoter. Molecular Breeding, 8: 207-216.
Chujo T, Takai R & Akimoto-Tomiyama C. 2007. Involvement of the elicitor-induced gene OsWRKY53 in the expression of defense-related genes in rice. Biochimica et Biophysica Acta - Gene Structure and Expression, 1769: 497–505.
Das A, Soubam D, Singh PK, Thakur S, Singh NK & Sharma TR. 2012. A novel blast resistance gene, Pi54rh cloned from wild species of rice, Oryza rhizomatis confers broad spectrum resistance to Magnaporthe oryzae. Functional and Integrative Genomics, 12: 215-228.
Dey N, Sarkar S, Acharya S & Maiti IB. 2015. Synthetic promoters in planta. Planta, 242: 1077-1094.
Escobar C, Barcala M, Portillo M, Almoguera C, Jordano J & Fenoll C. 2003. Induction of the Hahsp17.7G4 promoter by root-knot nematodes: involvement of heat-shock elements in promoter activity in giant cells. Molecular plant-microbe interactions : MPMI, 16: 1062-1068.
Ferry N & Gatehouse AMR. 2010. Transgenic crop plants for resistance to biotic stress. Transgenic Crop Plants,1–65.
Giacomin LT & Szalay AA. 1996. Expression of a PALI promoter luciferase gene fusion in Arabidopsis thaliana in response to infection by phytopathogenic bacteria. Plant Science, 116: 59-72.
Godard KA, Byun-Mckay A, Levasseur C, Plant A, Séguin A & Bohlmann J. 2007. Testing of a heterologous, wound- and insect-inducible promoter for functional genomics studies in conifer defense. Plant Cell Reports, 26: 2083-2090.
Gupta NC, Jain PK, Bhat SR & Srinivasan R. 2012. Upstream sequence of fatty acyl-CoA reductase (FAR6) of Arabidopsis thaliana drives wound-inducible and stem-specific expression. Plant Cell Reports, 31: 839-850.
Gurr SJ & Rushton PJ. 2005. Engineering plants with increased disease resistance: What are we going to express? Trends in Biotechnology, 23: 275-282.
Hernandez-Garcia CM & Finer JJ. 2014. Identification and validation of promoters and cis-acting regulatory elements. Plant Science, 217-218: 109-119.
Kaur P, Samuel DVK & Bansal KC. 2010. Fruit-specific Over-expression of LeEXP1 Gene in Tomato Alters Fruit Texture. Journal of Plant Biochemistry and Biotechnology, 19: 177-183.
Kirsch C, Logemann E, Lippok B, Schmelzer E & Hahlbrock K. 2001. A highly specific pathogen-responsive promoter element from the immediate-early activated CMPG1 gene in Petroselinum crispum. Plant Journal, 26: 217-227.
Kovalchuk N, Li M & Wittek F. 2010. Defensin promoters as potential tools for engineering disease resistance in cereal grains. Plant Biotechnology Journal, 8: 47-64.
Kumar A, Joshi I, Kohli D, Satheesh V, Abdin MZ, Sirohi A, Srinivasan R & Jain PK. 2016. Characterization of root-knot nematode responsive and root-specific promoter containing PIN domain from Arabidopsis thaliana (L.) Heynh. Indian Journal of Genetics and Plant Breeding, 76: 75-83.
Langridge WH, Fitzgerald KJ, Koncz C, Schell J & Szalay AA. 1989. Dual promoter of Agrobacterium tumefaciens mannopine synthase genes is regulated by plant growth hormones. Proceedings of the National Academy of Sciences of the United States of America, 86: 3219-3223.
Lescot M, Déhais P, Thijs G, Marchal K, Moreau Y, Van de Peer Y, Rouzé P & Rombauts S. 2002. Plant CARE, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Research, 30: 325-327.
Lin CH & Chen CY. 2017. The pathogen-inducible promoter of defense-related LsGRP1 gene from Lilium functioning in phylogenetically distinct species of plants. Plant Science, 254: 22-31.
MacIsaac KD & Fraenkel E. 2006. Practical Strategies for Discovering Regulatory DNA Sequence Motifs. PLOS Computational Biology, 2: 36.
Mazarei M, Teplova I, Hajimorad MR & Stewart CN. 2008. Pathogen phytosensing: Plants to report plant pathogens. Sensors, 8: 2628-2641.
Mei C, Qi M, Sheng G & Yang Y. 2006. Inducible overexpression of a rice allene oxide synthase gene increases the endogenous jasmonic acid level, PR gene expression, and host resistance to fungal infection. Molecular plant-microbe interactions : MPMI, 19: 1127-1137.
Mochida K & Shinozaki K. 2010. Genomics and bioinformatics resources for crop improvement. Plant & cell physiology, 51: 497-523.
Muthusamy SK, Dalal M, Chinnusamy V & Bansal KC. 2016. Differential Regulation of Genes Coding for Organelle and Cytosolic ClpATPases under Biotic and Abiotic Stresses in Wheat. Frontiers in Plant Science, 7: 929.
Muthusamy SK, Dalal M, Chinnusamy V & Bansal KC. 2017. Genome-wide identification and analysis of biotic and abiotic stress regulation of small heat shock protein (HSP20) family genes in bread wheat. Journal of Plant Physiology, 211: 100-113.
Odell JT, Nagy F & Chua NH. 1985. Identification of DNA sequences required for activity of the cauliflower mosaic virus 35S promoter. Nature, 313: 810-812.
Ong C & Corces V. 2011. Enhancer function: new insights into the regulation of tissue-specific gene expression. Nature Reviews Genetics, 12: 283-93.
Pilpel Y, Sudarsanam P & Church GM. 2001. Identifying regulatory networks by combinatorial analysis of promoter elements. Nature genetics, 29: 153-159.
Ramkumar G, Madhav MS, Rama Devi SJS, Manimaran P, Mohan KM, Prasad MS, Balachandran SM, Neeraja CN, Sundaram RM & Viraktamath BC. 2014. Nucleotide diversity of Pita, a major blast resistance gene and identification of its minimal promoter. Gene, 546: 250-256.
Roeder RG. 1996. The role of general initiation factors in transcription by RNA polymerase II. Trends in Biochemical Sciences, 21: 327-335.
Sainsbury S, Bernecky C & Cramer P. 2015. Structural basis of transcription initiation by RNA polymerase II. Nature Reviews Molecular Cell Biology, 16: 129-143.
Sanghera GS, Wani SH, Singh G, Kashyap PL & Singh NB. 2011. Designing crop plants for biotic stresses using transgenic approach. Vegetos, 24: 1-25.
Sasaki K, Yuichi O, Hiraga S, Gotoh Y, Seo S, Mitsuhara I, Ito H, Matsui H & Ohashi Y. 2007. Characterization of two rice peroxidase promoters that respond to blast fungus-infection. Molecular Genetics and Genomics, 278: 709-722.
Shi J, An HL, Zhang L, Gao Z & Guo XQ. 2010. GhMPK7, a novel multiple stress-responsive cotton group C MAPK gene, has a role in broad spectrum disease resistance and plant development. Plant Molecular Biology, 74: 1-17.
Siddique S, Wieczorek K, Szakasits D, Kreil DP & Bohlmann H. 2011. The promoter of a plant defensin gene directs specific expression in nematode-induced syncytia in Arabidopsis roots. Plant Physiology and Biochemistry, 49: 1100-1107.
Srinivasan R & Saha D. 2009. Promoter trapping in plants using T-DNA mutagenesis. Molecular Techniques in Crop Improvement: 2nd Edition, 545-577.
Tang W, Luo X & Samuels V. 2004. Regulated gene expression with promoters responding to inducers. Plant Science, 166: 827-834.
Tiwari S, Mishra DK, Chandrasekhar K, Singh PK & Tuli R. 2011. Expression of δ-endotoxin Cry1EC from an inducible promoter confers insect protection in peanut (Arachis hypogaea L.) plants. Pest Management Science, 67: 137-145.
Vijayan J, Devanna BN, Singh NK & Sharma TR. 2015. Cloning and functional validation of early inducible Magnaporthe oryzae responsive CYP76M7 promoter from rice. Frontiers in plant science, 6: 371.
Will T & Vilcinskas A. 2013. Aphid-proof plants: Biotechnology-based approaches for aphid control. Advances in Biochemical Engineering/Biotechnology,179-203.
Wu J, Yang Z & Wang Y. 2015. Viral-inducible Argonaute18 confers broad-spectrum virus resistance in rice by sequestering a host microRNA. eLife 4.
Yan L, Zhai Q & Wei J. 2013. Role of Tomato Lipoxygenase D in Wound-Induced Jasmonate Biosynthesis and Plant Immunity to Insect Herbivores. PLoS Genetics, 9.
YANG L mei, Mercke P, van Loon JJ, FANG Z yuan, Dicke M & Jongsma MA. 2008. Expression in Arabidopsis of a Strawberry Linalool Synthase Gene Under the Control of the Inducible Potato PI2 Promoter. Agricultural Sciences in China, 7: 521-534.
Zhu-Salzman K, Salzman RA, Ahn JE & Koiwa H. 2004. Transcriptional regulation of sorghum defense determinants against a phloem-feeding aphid. Plant physiology, 134: 420-431.
Zuo YC & Li QZ. 2011. Identification of TATA and TATA-less promoters in plant genomes by integrating diversity measure, GC-Skew and DNA geometric flexibility. Genomics, 97: 112-120.
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Published
2017-11-30
How to Cite
Muthusamy, S., Sivalingam, P., Sridhar, J., Singh, D., Haldhar, S., & Kaushal, P. (2017). Biotic stress inducible promoters in crop plants- a review. Journal of Agriculture and Ecology, 4(4), 14–24. Retrieved from https://saaer.org.in/journals/index.php/jae/article/view/46
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