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A Systems Biology View on Bacterial Response to Temperature Shift

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Biotechnology of Extremophiles:

Part of the book series: Grand Challenges in Biology and Biotechnology ((GCBB,volume 1))

Abstract

Extremophilic microbes have adapted to thrive in ecological niches characterized by harsh chemical/physical conditions such as, for example, very low/high temperature. Studying the mechanisms exploited by these microorganisms to overcome the selective pressure acting in such ecological niches is stimulating from a basic research viewpoint and because of biotechnological applications. The spreading of -omics technologies has greatly impacted this research field and our understanding of life in extreme conditions is constantly increasing. In this contribution we present an overview of the recent advances in the use of high throughput technologies (e.g. massive genome and transcriptome sequencing) for characterizing cold and heat shock response in microbes. Furthermore, we stress the importance of data integration (with a special focus on the use of metabolic modelling techniques) for a holistic comprehension of the basic cell functioning in response to temperature shifts. A recent example of the potential use of a systems biology framework in the context of cold shock response is also provided.

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Authors and Affiliations

  1. Department of Biology, University of Florence, Via Madonna del Piano 6, 50019, Sesto Fiorentino, Firenze, Italy

    Marco Fondi, Emanuele Bosi & Renato Fani

  2. Institute for Coastal Marine Environment, National Research Council (IAMC-CNR), Spianata San Raineri 86, I-98124, Messina, Italy

    Angelina Lo Giudice

  3. Department of Biological and Environmental Sciences, University of Messina, Viale F. Stagnod’Alcontrès 31, I-98166, Messina, Italy

    Angelina Lo Giudice

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  1. Marco Fondi
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  2. Emanuele Bosi
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  4. Renato Fani
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Correspondence to Renato Fani .

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  1. Federal University of Rio Grande do Sul, Porto Alegre, Rio Grande do Sul, Saint Barthélemy

    Pabulo H Rampelotto

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Marco Fondi, Emanuele Bosi, Angelina Lo Giudice, and Renato Fani declare that they have no conflict of interest.

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Fondi, M., Bosi, E., Giudice, A.L., Fani, R. (2016). A Systems Biology View on Bacterial Response to Temperature Shift. In: Rampelotto, P. (eds) Biotechnology of Extremophiles:. Grand Challenges in Biology and Biotechnology, vol 1. Springer, Cham. https://doi.org/10.1007/978-3-319-13521-2_21

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