A nanopore based chromosome-level assembly representing Atlantic cod from the Celtic Sea.
File S1: Bioinformatics methods, tools and pipelines used to generate gadMor_Celtic and other information complementing the materials and methods section can be found here.
Table S1: Linkage map of gadMor_Celtic: SNPs, position in gadMor_Celtic, genetic linkage of male, female in centimorgan (cM) and SNP flank sequence from gadMor1 (NEAC).
Table S2: Predicted function of open reading frames were found with TransDecoder and homology search using blastp against zebrafish and stickleback protein databases.
Figure S1: Plots showing collinearity between genetic maps for males (red) and female (blue) and the frequency of a 258bp tandem repeat structure (histogram) predicted to be related to centromeres in all 23 chromosomes.
Table S3: This contains the list of genes in LGs 1, 2, 7 and 12.
File S2: The putative 258bp centromere repeat sequence.
