Published September 1, 2021
| Version v1.0
Software
Open
Human pluripotent stem cell-derived kidney organoids for personalized congenital and idiopathic nephrotic syndrome modeling -- RNA sequencing and Fiji macro scripts
Creators
- 1. Department of Pathology and Department of Pediatric Nephrology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Amalia Children's Hospital, Nijmegen, the Netherlands
- 2. Department of Pathology and Department of Pediatric Nephrology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, the Netherlands
- 3. Department of Pediatric Nephrology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Amalia Children's Hospital, Nijmegen, the Netherlands
- 4. Department of Pathology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, the Netherlands
Contributors
Researchers:
- 1. Department of Pathology and Department of Pediatric Nephrology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, the Netherlands
- 2. Department of Pathology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, the Netherlands
Description
This upload contains the R scripts that were used to perform single-cell RNA sequencing analysis and bulk RNA sequencing analysis in the following article:
Jansen, J. et al. Human pluripotent stem cell-derived kidney organoids for personalized congenital and idiopathic nephrotic syndrome modeling (2021).
Furthermore, the script that was used to automate the macro in Fiji for image quantitation is deposited here.
Files
Files
(57.8 kB)
| Name | Size | Download all |
|---|---|---|
|
md5:6f1025bd3581f2551562b953bdd0a1b2
|
33.3 kB | Download |
|
md5:a9aa00faa6195e3c0e562659e725dcfc
|
16.0 kB | Download |
|
md5:b0ccb85984a7ed21f61f5fd2fb6d4d2f
|
3.9 kB | Download |
|
md5:4d125bf39a198ebf615b220980655fae
|
4.6 kB | Download |