RNA-Seq read coverage depth of splice sites in fungi
Pucker B, Frey K (2019)
Bielefeld University.
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supported_splice_sites_fungi.txt
30.59 MB
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Abstract / Bemerkung
RNA-Seq reads of 28 fungal species were mapped to the corresponding genome sequence. The coverage around splice sites within the protein coding sequence of genes is listed. Each line represents one intron within a protein coding
sequence. Species name and gene ID are provided in the first two columns. Next, the number of reads mapped to the very 3' end of the upstream exon, 5' and 3' ends of the intron, and the very 5' end of the downstream exon are given. The
last two columns provide the terminal dinucleotide sequences of an intron. This analysis was performed according to Pucker & Brockington, 2018 (https://doi.org/10.1186/s12864-018-5360-z) using Python scripts reported therein (https://doi.org/10.5281/zenodo.2586989).
Analysed species: Alternaria_alternata, Aspergillus_brasiliensis_CBS_101740, Aspergillus_calidoustus, Aspergillus_fumigatus_Af293, Aspergillus_niger, Candida_albicans_SC5314, Cryptococcus_neoformans_var_neoformans_JEC21, Fomitopsis_pinicola_FP_58527_SS1, Fusarium_graminearum_PH_1, Fusarium_oxysporum_f_sp_lycopersici_4287, Fusarium_pseudograminearum_CS3096, Gaeumannomyces_tritici_R3_111a_1, Kalmanozyma_brasiliensis_GHG001, Kluyveromyces_lactis, Komagataella_phaffii_GS115, Magnaporthe_oryzae_70_15, Neurospora_crassa_OR74A, Penicillium_chrysogenum, Pichia_kudriavzevii, Pyrrhoderma_noxium, Saccharomyces_cerevisiae_S288C, Saccharomyces_eubayanus, Schizosaccharomyces_pombe, Torulaspora_delbrueckii, Yarrowia_lipolytica_CLIB122, Zygosaccharomyces_parabailii, Zygosaccharomyces_rouxii, Zymoseptoria_tritici_IPO323
Stichworte
RNA-Seq;
fungi;
non-canonical splice sites
Erscheinungsjahr
2019
Copyright und Lizenzen
Page URI
https://pub.uni-bielefeld.de/record/2934220
Zitieren
Pucker B, Frey K. RNA-Seq read coverage depth of splice sites in fungi. Bielefeld University; 2019.
Pucker, B., & Frey, K. (2019). RNA-Seq read coverage depth of splice sites in fungi. Bielefeld University. doi:10.4119/unibi/2934220
Pucker, Boas, and Frey, Katharina. 2019. RNA-Seq read coverage depth of splice sites in fungi. Bielefeld University.
Pucker, B., and Frey, K. (2019). RNA-Seq read coverage depth of splice sites in fungi. Bielefeld University.
Pucker, B., & Frey, K., 2019. RNA-Seq read coverage depth of splice sites in fungi, Bielefeld University.
B. Pucker and K. Frey, RNA-Seq read coverage depth of splice sites in fungi, Bielefeld University, 2019.
Pucker, B., Frey, K.: RNA-Seq read coverage depth of splice sites in fungi. Bielefeld University (2019).
Pucker, Boas, and Frey, Katharina. RNA-Seq read coverage depth of splice sites in fungi. Bielefeld University, 2019.
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supported_splice_sites_fungi.txt
30.59 MB
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Open Access
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2019-09-25T06:54:37Z
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