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Development of detection system using multiplex PCR and liquid beadarray for stacked genetically modified rice event (LS28×Cry1Ac)

  • Food science/microbiology
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Abstract

A multiplex system was developed to assess detection of stacked genetically modified (GM) rice (LS28 × Cry1Ac) based on multiplex polymerase chain reaction (PCR) and liquid beadarray, and the accuracy of the system was analyzed. Standard and specific bulging specific (SBS) primers with standard primers were used to simultaneously detect multiple targets in stacked events of rice. Five sets of primers for the stacked events were applied to amplify their targets, and were separated distinctly in agarose gel. A liquid beadarray assay for the stacked GM rice was performed using the multiplex PCR products, followed by target biotinylation and hybridization between biotinylated-tagged target and anti-tagged bead. Fluorescent signals of the hybridized target sequences were detected by the Luminex system. The signaling patterns were analyzed by their mean fluorescent intensity (MFI) value. Results showed that liquid beadarrays with standard and SBS primers were in complete agreement with the PCR data, and detection of the different target elements was found to be very specific with no cross reaction among samples. Therefore, our detection system developed for stacked GM crop using multiplex PCR and liquid beadarray can be a useful and efficient system for screening and analyzing multiple transgenes in a single tube for qualitative analysis.

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References

  • Furui S, Kitta K, Hino A, and Teshima R (2008) Individual detection of genetically modified maize varieties in nonidentity-preserved maize samples. J Agric Food Chem 56, 1977–1983.

    Article  Google Scholar 

  • Akiyama H, Watanabe T, Wakabayashi K, Nakade S, Yasui S, Sakata K, Chiba R, Spiegelhalter F, Hino A, and Maitani T (2005) Quantitative detection system for maize sample containing combined-trait genetically modified maize. Anal Chem 77, 7421–7428.

    Article  CAS  Google Scholar 

  • Chamberlain JS, Gibbs RA, Rainer JE, Nguyen PN, and Thomas C (1988) Deletion screening of the Duchenne muscular dystrophy locus via multiplex DNA amplification. Nucleic Acids Res 16, 11141–11156.

    Article  CAS  Google Scholar 

  • Cheng X, Sardana R, Kaplan H, and Altosaar I (1998) Agrobacterium-transformed rice plants expression synthetic CryIA(b) and CryIA(c) genes are highly toxic to striped stem borer and yellow stem borer. Proc Natl Acad Sci USA 95, 2767–2772.

    Article  CAS  Google Scholar 

  • Chiueh LC, Chen YL, and Shih YC (2002) Study on the detection method of six varieties of genetically modified maize and processed foods. J Food Drug Anal 10, 25–33.

    CAS  Google Scholar 

  • De Schrijver A, Devos Y, Van den Bulcke M, Cadot P, De Loose M, Reheul D, and Sneyers M (2007) Risk assessment of GM stacked events obtained from crosses between GM events. Trends Food Sci Technol 18, 101–109.

    Article  Google Scholar 

  • Ding J, Jia J, Yang L, Wen H, Zhang C, Liu W, and Zhang D (2004) Validation of a rice specific gene, sucrose phosphate synthase, used as the endogenous reference gene for qualitative and real-time quantitative PCR detection of transgenes. J Agric Food Chem 52, 3372–3377.

    Article  CAS  Google Scholar 

  • Dunbar SA (2006) Application of Luminex® XMAP™ technology for rapid, high-throughput multiplexed nucleic acid detection. Clin Chim Acta 363, 71–82.

    Article  CAS  Google Scholar 

  • Halpin C (2005) Gene stacking in transgenic plants-the challenge for 21st century plant biotechnology. Plant Biotechnol J 3, 141–155.

    Article  CAS  Google Scholar 

  • Hamels S, Glouden T, Gillard K, Mazzara M, Debode F, Foti N, Sneyers M, Nuez TE, Pla M, Berben G, Moens W, Bertheau Y, Audéon C, Van den Eede G, and Remacle T (2009) A PCR-microarray method for the screening of genetically modified organisms. Eur Food Res Technol 228, 531–541.

    Article  CAS  Google Scholar 

  • Holst-Jensen A (2009) Testing for genetically modified organisms (GMOs): Past, present and future perspectives. Biotech Adv 27, 1071–1082.

    Article  CAS  Google Scholar 

  • Kang HJ, Oh YT, Chun SM, Seo, YJ, Shin HY, Kim CW, Ahn HS, and Han BD (2008) TotalPlex gene amplification using bulging primers for pharmacogenetic analysis of acute lymphoblastic leukemia. Mol Cell Probes 22, 193–200.

    Article  CAS  Google Scholar 

  • Kim JH, Kim TW, Lee WY, Park SH, and Kim HY (2007) Multiplex PCR detection of the GT73, MS8×RF3, and T45 varieties of GM canola. Food Sci Biotechnol 16, 104–109.

    Google Scholar 

  • Kim JH, Park SH, and Kim HY (2009) Multiplex PCR detection of four events of GM maize (Event 3272, LY038, MIR162, and MON88017). J Korean Soc Appl Biol Chem 52, 105–107.

    Article  CAS  Google Scholar 

  • Lee KR, Shin KS, Suh SC, Kim KY, Jeon YH, Park BS, Kim JK, Kweon SJ, and Lee YH (2009) Molecular characterization of lepidopteran pest-resistant transgenic rice events expressing synthetic Cry1Ac. Plant Biotechnol Rep 3, 317–324.

    Article  Google Scholar 

  • Leimanis S, Hernandez M, Fernandez S, Boyer F, Burns M, Bruderer S, Glouden T, Harris N, Kaeppeli O, Philipp P, Pla M, Puigdomènech P, Vaitilingom M, Bertheau Y, and Remacle J (2006) A microarray-based detection system for genetically modified (GM) food ingredients. Plant Mol Biol 61, 123–139.

    Article  CAS  Google Scholar 

  • Mahony J, Chong S, Merante F, Yaghoubian S, Sinha T, Lisle C, and Janeczko R (2007) Development of a respiratory virus panel test for detection of twenty human respiratory viruses by use of multiplex PCR and a liquid beadarraybased assay. J Clin Microbiol 45, 2965–2970.

    Article  CAS  Google Scholar 

  • Matsuoka T, Kuribara H, Akiyama H, Miura K, Goda Y, Kusakabe Y, Isshiki K, Toyoda M, and Hino A (2001) A multiplex PCR method of detecting recombinant DNAs from five lines of genetically modified maize. J Food Hyg Soc Jpn 42, 24–32.

    Article  CAS  Google Scholar 

  • Oh Y, Park SW, Chun S, Lim N, Ahn KS, Ka J, Jin D, and Han B (2009) Genotyping of CYP21A2 for congenital adrenal hyperplasia screening using allele-specific primer extention followed by bead array hybridization. Mol Diagn Ther 13, 397–405.

    CAS  Google Scholar 

  • Onishi M, Matsuoka T, Kodama T, Kashiwaba K, Futo S, Akiyama H, Maitani T, Furui S, Oguchi T, and Hino A (2005) Development of a multiplex polymerase chain reaction method for simultaneous detection of eight events of genetically modified maize. J Agri Food Chem 53, 9713–9721.

    Article  CAS  Google Scholar 

  • Querci M, Foti N, Bogni A, Kluga L, Broll H, and Van den Eede G (2009) Real-time PCR-based ready-to-use multitarget analytical system for GMO detection. Food Anal Methods 2, 325–336.

    Article  Google Scholar 

  • Quirasco M, Schoel B, Chhalliyil P, Faga J, and Gálvez A (2008) real-time and conventional PCR detection of Liberty Link® rice varieties and transgenic soy in rice sampled in the Mexican and American retail markets. Anal Bioanal Chem 392, 395–404.

    Article  CAS  Google Scholar 

  • Schmidt A, Sahota R, Pope DS, Lawrence TS, Belton MP, and Rott ME (2008) Detection of genetically modified canola using multiplex PCR coupled with oligonucleotide microarray hybridization. J Agric Food Chem 56, 6791–6800.

    Article  CAS  Google Scholar 

  • Shin KS, Park JH, Lee JH, Lee SM, Woo, HJ, Lim SH, Kim HY, Suh SC, and Kweon SJ (2009) Qualitative PCR detection of stack gene GM rice (LS28×Cry1Ac) developed in Korea. J Appl Biol Chem 52, 1–7.

    Article  CAS  Google Scholar 

  • Shrestha HK, Hwu KK, Wang SJ, Liu LF, and Chang MC (2008) Simultaneous detection of eight genetically modified maize lines using a combination of event- and construct-specific multiplex-PCR technique. J Agric Food Chem 56, 8962–8968.

    Article  CAS  Google Scholar 

  • Taverniers I, Papazova N, Bertheau Y, De Loose M, and Holst-Jensen A (2008) Gene stacking in transgenic plants: towards compliance between definitions, terminology and detection within the EU regulatory framework. Environ Biosafety Res 7, 197–218.

    Article  CAS  Google Scholar 

  • Taverniers I, Windels P, Vaitilingom M, Milcamps A, Van Bockstaele E, Van den Eede G, and De Loose M (2005) Event-specific plasmid standards and real-time PCR methods for transgenic Bt11, Bt176, and GA21 maize and transgenic GT73 canola. J Agric Food Chem 53, 3041–3052.

    Article  CAS  Google Scholar 

  • Vollenhofer S, Burg K, Schmidt J, and Kroath H (1999) Genetically modified organisms in food-screening and specific detection by polymerase chain reaction. J Agric Food Chem 47, 5038–5043.

    Article  CAS  Google Scholar 

  • Wilson WJ, Erler AM, Nasarabadi SL, Skowronski EW, and Imbro PM (2005) A multiplex PCR-coupled liquid bead array for the simultaneous detection of four biothreat agents. Mol Cell Probes 19, 137–144.

    Article  CAS  Google Scholar 

  • Xu J, Zhu S, Miao H, Huang W, Fu Y, and Li Y (2007) Eventspecific detection of seven genetically modified soybean and maizes using multiplex-PCR coupled with oligonucleotide microarray. J Agric Food Chem 55, 5575–5579.

    Article  CAS  Google Scholar 

  • Xu W, Yuan Y, Luo Y, Bai W, Zhang C, and Huang K (2009) Event-specific detection of stacked genetically modified maize BT×GA21 by UP-M-PCR and real-time PCR. J Aric Food Chem 57, 395–402.

    Article  CAS  Google Scholar 

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Correspondence to Ki Hyun Ryu.

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Choi, S.H., Oh, Y.T., Kwon, J.Y. et al. Development of detection system using multiplex PCR and liquid beadarray for stacked genetically modified rice event (LS28×Cry1Ac). J. Korean Soc. Appl. Biol. Chem. 53, 639–646 (2010). https://doi.org/10.3839/jksabc.2010.097

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  • DOI: https://doi.org/10.3839/jksabc.2010.097

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