[Credits]

Life Science Database Archive
ChIP-Atlas

File list

Data detail

info Data name File list
info DOI 
info Version List 
info Description of data contents 

A list of merged bed file and its metadata, including reference genome data, antigen, cell type, and identifier of merged experiments. See details here: https://github.com/inutano/chip-atlas/wiki#downloads_doc

info Data file 
File name:
chip_atlas_file_list.zip
File URL:
https://dbarchive.biosciencedbc.jp/data/chip-atlas/LATEST/chip_atlas_file_list.zip
File size:
20 MB
info Simple search URL 
info Data acquisition method 

We have generated a list of this bed file automatically by processing data downloaded from Sequence Read Archive.

info Data analysis method 

See details of data processing here: https://github.com/inutano/chip-atlas/wiki

info Number of data entries 

138,344 entries

Data itemDescription
File name File name
Genome assembly Genome assembly
Antigen class Antigen class
Antigen Antigen
Cell type class Cell type class
Cell type Cell type
Threshold Threshold
Experimental IDs included Experimental IDs included
Peak-call (BED) Link to a BED9 + GFF3 format file concatenated and converted from the BED4-formatted peak-call data files of the experiments in the "Experimental IDs included".