Repository details
GnpIS
Name of repository
GnpIS
Additional name(s)
- Genetic and Genomic Information System
Repository URL
Subject(s)
- Engineering Sciences
- Computer Science, Electrical and System Engineering
- Computer Science
- Agriculture, Forestry, Horticulture and Veterinary Medicine
- Life Sciences
- Biology
- Basic Biological and Medical Research
- Operating, Communication and Information Systems
- Agriculture, Forestry, Horticulture and Veterinary Medicine
- Basic Forest Research
- Plant Cultivation
- Plant Breeding
- Inventory Control and Use of Forest Resources
- Plant Systematics and Evolution
- Plant Genetics
- Plant Sciences
- Bioinformatics and Theoretical Biology
Description
GnpIS is a multispecies integrative information system dedicated to plant and fungi pests. It bridges genetic and genomic data, allowing researchers access to both genetic information (e.g. genetic maps, quantitative trait loci, association genetics, markers, polymorphisms, germplasms, phenotypes and genotypes) and genomic data (e.g. genomic sequences, physical maps, genome annotation and expression data) for species of agronomical interest. GnpIS is used by both large international projects and plant science departments at the French National Research Institute for Agriculture, Food and Environment. It is regularly improved and released several times per year. GnpIS is accessible through a web portal and allows to browse different types of data either independently through dedicated interfaces or simultaneously using a quick search ('google like search') or advanced search (Biomart, Galaxy, Intermine) tools.
Contact
- https://urgi.versailles.inrae.fr/Contact-us
- urgi-contact@inrae.fr
Content type(s)
Keyword(s)
Persistent identifier(s) of the repository
- OMICS_11988
- FAIRsharing_doi:10.25504/fairsharing.dw22y3
- MIR:00100831
Repository type(s)
- disciplinary
Mission statement for designated community
Research data repository language(s)
- French
- English
Data and/or service provider
- data provider
Institution name
Additional name(s)
- INRAE, URGI
Identifier(s)
- VIAF:6521159248111304870006
Contact(s)
- urgi-contact@inrae.fr
Country
Type(s) of responsibility
- funding
- technical
- general
Type of institution
non-profit
Policies (1)
Policy Name
Database access
Type of access to research data repository
open
Data access (3)
Type of access to data
restricted
Data access restriction type(s)
- other
Type of access to data
embargoed
Type of access to data
open
Data licenses (1)
DataLicense
Data upload (1)
Type of data upload
restricted
Data upload restriction type(s)
- other
Persistent identifier system(s)
- DOI
Versioning
yes
Data citation guideline
Enhanced Publication
unknown
Quality management
yes
Application programming interfaces (1)
API type
Metadata standards (1)
Remarks
Remarks
GnpIS use MIAPPE, an open, community driven project to harmonize data from plant phenotyping experiments, https://www.miappe.org/
Publications: GnpIS: an information system to integrate genetic and genomic data from plants and fungi, https://doi.org/10.1093/database/bat058
Linking the International Wheat Genome Sequencing Consortium bread wheat reference genome sequence to wheat genetic and phenomic data, https://doi.org/10.1186/s13059-018-1491-4
Entry date
2018-04-19
Last update
2021-06-16
Cite this re3data.org record:
re3data.org: GnpIS; editing status 2021-06-16; re3data.org - Registry of Research Data Repositories. http://doi.org/10.17616/R3RF6C last accessed: 2024-04-27- Current projects
- EOSC FAIR-IMPACT
- re3data COREF
-
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Except where otherwise noted, content on this site is licensed under a
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.
- Cite this service: re3data.org - Registry of Research Data Repositories. https://doi.org/10.17616/R3D last accessed: 2024-04-27
