Abstract
C20H30N4O4P2S4Zn, triclinic, P1̄ (no. 2), a = 8.01840(1) Å, b = 8.4326(1) Å, c = 23.5086(2) Å, α = 80.478(1)°, β = 80.679(1)°, γ = 76.112(1)°, V = 1509.37(3) Å3, Z = 2, Rgt(F) = 0.0449, wRref(F2) = 0.1182, T = 100(2) K.
Part of the polymeric structure is shown in the figure. Table 1 contains crystallographic data and Table 2 contains the list of the atoms including atomic coordinates and displacement parameters.
Crystal: | Colourless prism |
Size: | 0.16 × 0.12 × 0.05 mm |
Wavelength: | Cu Kα radiation (1.54184 Å) |
μ: | 4.99 mm−1 |
Diffractometer, scan mode: | XtaLAB Synergy, ω |
θmax, completeness: | 67.1°, >99% |
N(hkl)measured, N(hkl)unique, Rint: | 32995, 5385, 0.035 |
Criterion for Iobs, N(hkl)gt: | Iobs > 2 σ(Iobs), 5075 |
N(param)refined: | 320 |
Programs: | CrysAlisPRO [1], SHELX [2], [3], WinGX/ORTEP [4] |
Atom | x | y | z | Uiso*/Ueq |
---|---|---|---|---|
Zn | 0.45517(5) | 0.43245(5) | 0.76591(2) | 0.01869(13) |
S1 | 0.21866(9) | 0.60295(10) | 0.80904(3) | 0.02139(18) |
S2 | 0.15525(12) | 0.85492(11) | 0.90853(4) | 0.0330(2) |
S3 | 0.43677(12) | 0.18276(10) | 0.74057(4) | 0.0306(2) |
S4 | 0.14699(14) | 0.48242(14) | 0.67405(5) | 0.0457(3) |
P1 | 0.31649(10) | 0.68021(10) | 0.87091(3) | 0.02081(18) |
P2 | 0.29908(13) | 0.26753(12) | 0.67376(4) | 0.0332(2) |
O1 | 0.4922(3) | 0.7231(3) | 0.83743(9) | 0.0231(5) |
O2 | 0.3956(3) | 0.5288(3) | 0.91661(9) | 0.0239(5) |
O3 | 0.2174(4) | 0.1195(4) | 0.66502(13) | 0.0475(7) |
O4 | 0.4450(4) | 0.2507(3) | 0.61834(11) | 0.0403(6) |
N1 | 0.5757(3) | 0.5677(3) | 0.69818(11) | 0.0197(5) |
N2 | 0.9449(3) | 0.5566(3) | 0.51762(11) | 0.0230(6) |
N3 | 0.6471(3) | 0.3375(3) | 0.81908(11) | 0.0197(5) |
N4 | 0.5137(4) | 0.0488(3) | 0.97312(11) | 0.0236(6) |
C1 | 0.6088(5) | 0.7746(5) | 0.86863(16) | 0.0350(8) |
H1A | 0.6611 | 0.6810 | 0.8963 | 0.042* |
H1B | 0.5437 | 0.8648 | 0.8910 | 0.042* |
C2 | 0.7471(5) | 0.8323(4) | 0.82569(17) | 0.0312(8) |
H2A | 0.8065 | 0.7446 | 0.8022 | 0.047* |
H2B | 0.8306 | 0.8604 | 0.8463 | 0.047* |
H2C | 0.6951 | 0.9299 | 0.8003 | 0.047* |
C3 | 0.2988(5) | 0.4738(5) | 0.97098(14) | 0.0292(7) |
H3A | 0.2357 | 0.5708 | 0.9903 | 0.035* |
H3B | 0.3807 | 0.4036 | 0.9970 | 0.035* |
C4 | 0.1716(5) | 0.3781(5) | 0.96204(15) | 0.0309(8) |
H4A | 0.0837 | 0.4503 | 0.9394 | 0.046* |
H4B | 0.1156 | 0.3363 | 0.9999 | 0.046* |
H4C | 0.2326 | 0.2854 | 0.9410 | 0.046* |
C5 | 0.0770(6) | 0.0743(7) | 0.7055(2) | 0.0529(12) |
H5A | −0.0086 | 0.1746 | 0.7157 | 0.064* |
H5B | 0.1211 | 0.0120 | 0.7415 | 0.064* |
C6 | −0.0068(7) | −0.0289(7) | 0.6788(2) | 0.0572(13) |
H6A | −0.0333 | 0.0259 | 0.6402 | 0.086* |
H6B | −0.1142 | −0.0442 | 0.7034 | 0.086* |
H6C | 0.0718 | −0.1364 | 0.6752 | 0.086* |
C7 | 0.3937(6) | 0.2962(7) | 0.56081(18) | 0.0513(11) |
H7A | 0.3406 | 0.4154 | 0.5545 | 0.062* |
H7B | 0.3076 | 0.2342 | 0.5561 | 0.062* |
C8 | 0.5521(7) | 0.2564(8) | 0.5179(2) | 0.0666(15) |
H8A | 0.5214 | 0.2909 | 0.4783 | 0.100* |
H8B | 0.6003 | 0.1373 | 0.5232 | 0.100* |
H8C | 0.6383 | 0.3147 | 0.5240 | 0.100* |
C9 | 0.6851(4) | 0.4912(4) | 0.65626(13) | 0.0205(6) |
H9 | 0.7067 | 0.3745 | 0.6594 | 0.025* |
C10 | 0.7670(4) | 0.5761(4) | 0.60876(13) | 0.0206(6) |
C11 | 0.7338(4) | 0.7471(4) | 0.60405(14) | 0.0257(7) |
H11 | 0.7875 | 0.8089 | 0.5718 | 0.031* |
C12 | 0.6212(5) | 0.8258(4) | 0.64713(15) | 0.0282(7) |
H12 | 0.5967 | 0.9425 | 0.6449 | 0.034* |
C13 | 0.5449(4) | 0.7323(4) | 0.69354(14) | 0.0237(7) |
H13 | 0.4681 | 0.7867 | 0.7231 | 0.028* |
C14 | 0.8853(4) | 0.4823(4) | 0.56571(13) | 0.0224(7) |
H14 | 0.9179 | 0.3656 | 0.5736 | 0.027* |
C15 | 0.6071(4) | 0.2397(4) | 0.86746(13) | 0.0203(6) |
H15 | 0.4985 | 0.2090 | 0.8732 | 0.024* |
C16 | 0.7173(4) | 0.1802(4) | 0.91003(13) | 0.0211(6) |
C17 | 0.8778(4) | 0.2221(4) | 0.90024(15) | 0.0257(7) |
H17 | 0.9567 | 0.1840 | 0.9282 | 0.031* |
C18 | 0.9216(4) | 0.3202(4) | 0.84916(16) | 0.0288(7) |
H18 | 1.0317 | 0.3482 | 0.8413 | 0.035* |
C19 | 0.8039(4) | 0.3761(4) | 0.81013(14) | 0.0240(7) |
H19 | 0.8339 | 0.4445 | 0.7755 | 0.029* |
C20 | 0.6654(4) | 0.0785(4) | 0.96354(14) | 0.0228(7) |
H20 | 0.7445 | 0.0345 | 0.9912 | 0.027* |
Source of material
The Zn[S2P(OEt)2]2 precursor was prepared in high yield from the in situ reaction of Zn(NO3)2 ⋅ 6 H2O (Alfa Aesar; 14.87 g, 0.05 mol), EtOH (Merck; 12.25 mL, 0.21 mol), P2S5 (Sigma-Aldrich; 11.11 g, 0.05 mol) and 50% w/w NaOH solution (Merck; 8.80 mL, 0.11 mol). 1,2-Bis(3-pyridylmethylene)aldazine was prepared in high yield from reaction of 3-picolylamine (Sigma-Aldrich; 2.03 mL, 0.02 mol) and hydrazinium hydroxide (Merck; 0.49 mL, 0.01 mol) in ratio 2:1 in ethanol solution (Merck; 5 mL) under reflux for 1 h. The title compound was obtained by mixing a suspension of Zn[S2P(OEt)2]2 (0.50 g, 1.15 mmol) and 1,2-bis(3-pyridylmethylene)hydrazine (0.25 g, 1.19 mmol) in dimethylformamide (Merck; 5 mL), followed by stirring for 30 min at 373 K. The solution was filtered and the filtrate was collected in a sample vial containing acetonitrile (Merck; 1 mL). Colourless prisms formed after one day. Yield: 0.49 g, (66.0%, based on Zn[S2P(OEt)2]2). M.pt (Stuart SMP 30 Melting point apparatus): 387.6–388.6 K. IR (Bruker Vertex 70 V equipped with Platinum ATR from 400 to 80 cm−1): 1059(w) ν(C—O); 1015(s) ν(P—O); 651(s) ν(P—S)asym; 522(w) ν(P—S)sym, 287(m) ν(Zn—S); 379(w) ν(Zn—N).
Experimental details
The C-bound H atoms were geometrically placed (C—H = 0.95–0.99 Å) and refined as riding with Uiso(H) = 1.2–1.5Ueq(C). The maximum and minimum residual electron density peaks of 1.63 and 1.24 eÅ−3, respectively, were located 1.15 and 0.75 Å from the H5a and S4 atoms, respectively, belonging to one of the two symmetry-independent diethyl dithiophosphate anions. There is some evidence of disorder in this ligand, which could not be modelled satisfactorily.
Comment
The isomeric, potentially bridging molecules, 1,2-bis(n-pyridylmethylene)hydrazine, n-NC5H4C(H)=N—N=C(H)C5H4N-n, often referred to as the n-pyridylaldazines (n-PyAld), have revealed interesting monodentate modes of coordination in their adducts with zinc-triad 1,1-dithiolates [5]. For example, when the metal node is zinc complexed to dithiocarbamate (−S2CN(R)R′) and the ligand is 4-PyAld, monodentate coordination of 4-PyAld is observed in mononuclear Zn[S2CN(iPr)CH2CH2OH]2(4-PyAld) with five-coordinate zinc(II) [6]; the non-coordinating pyridyl-nitrogen atom engages in hydroxy-O—H⋯N(pyridyl) hydrogen bonding. When 3-PyAld is employed and the 1,1-dithiolate ligand is dithiophosphate [−S2P(OR)2], bidentate bridging is found in {Zn[S2P(O-iPr)2]2(3-PyAld)}n, (I), which is a one-dimensional coordination polymer with a step-ladder topology [7]. In the present report, the crystal and molecular structures of the ethyl analogue of the latter is described as it is well documented in the structural chemistry of the zinc-triad 1,1-dithiolates that changes in R groups can have profound implications on the ultimate structural motif adopted in the solid-state [5], [8].
The asymmetric unit of (I) comprises Zn[S2P(OEt)2]2 and two-half 3-PyAld molecules as each is disposed about a centre of inversion, as indicated in the figure (70% probability displacement ellipsoids; the unlabelled atoms of the N1-3-PyAld molecule are related by the symmetry operation (i) 2 − x, 1 − y, 1 − z and those of the N3-3-PyAld molecule by (ii) 1 − x, − y, 2 − z). The zinc(II) centre is tetrahedrally coordinated by two sulphur atoms derived from two monodentate dithiophosphate anions as well as two nitrogen atoms derived from two different 3-PyAld molecules. The dithiophosphate ligands have different modes of coordination. The S1-dithiophosphate coordinates via the S1 atom [Zn—S1 = 2.2896(8) Å] and is orientated so the O1 atom [Zn⋯O1 = 3.286(2) Å], rather than the S2 atom, is directed towards the zinc atom. By contrast, the S3-dithiophosphate ligand coordinates via the S3 atom [Zn—S3 = 2.3243(9) Å] with the S4 atom [Zn⋯S4 = 3.4460(10) Å] directed towards the zinc atom. As anticipated, the P—S bond lengths reflect the different environments of the S1–S4 atoms in that the P1—S1 [2.0208(11) Å] and P2—S3 [2.0021(13) Å] bond lengths, involving the coordinating sulphur atoms are longer than those not involved in coordination [P1—S2 = 1.9418(11) Å and P2—S4 = 1.9265(14) Å]. The Zn—N1 [2.050(3) Å] and Zn—N3 [2.067(3) Å] bond lengths are experimentally equivalent. The range of tetrahedral angles subtended by the N2S2 donor set is a narrow 96.82(8)°, for S3—Zn—N3, to a wide 121.49(4)°, for S1—Zn—S3. Small twists are noted in the 3-PyAld bridges as seen in the C9—C10—C14—N2 [170.5(3)°] and C17—C16—C20—N4 [176.2(3)°] torsion angles.
As seen from the lower view of the figure, the application of symmetry gives rise to a coordination polymer. The topology of the chain is twisted which contrasts the step-ladder topology noted for the R = i-Pr analogue [7]. The chain is aligned along [1 1 −1]. The atom-to-atom connections between chains that sustain the three-dimensional architecture are methylene-C—H⋯N(aldazine) [C1—H1b⋯N4iii: H1b⋯N4iii = 2.62 Å, C1⋯N4iii = 3.520(5) Å with angle at H1b = 151° for (iii) x, 1 + y, z] and pyridyl-C—H⋯S(thiolate) [C18—H18⋯S1iv: H18⋯S1iv = 2.84 Å, C18⋯S1iv = 3.675(3) Å with angle at H18 = 147° for (iv) 1 + x, y, z] interactions.
Acknowledgements
Sunway University Sdn Bhd is thanked for financial support of this work through Grant no. STR-RCTR-RCCM-001-2019.
References
1. Rigaku Oxford Diffraction: CrysAlisPRO. Rigaku Corporation, Oxford, UK (2018).Search in Google Scholar
2. Sheldrick, G. M.: A short history of SHELX. Acta Crystallogr. A64 (2008) 112–122.10.1107/S0108767307043930Search in Google Scholar PubMed
3. Sheldrick, G. M.: Crystal structure refinement with SHELXL. Acta Crystallogr. C71 (2015) 3–8.10.1107/S2053229614024218Search in Google Scholar PubMed PubMed Central
4. Farrugia, L. J.: WinGX and ORTEP for Windows: an update. J. Appl. Crystallogr. 45 (2012) 849–854.10.1107/S0021889812029111Search in Google Scholar
5. Tiekink, E. R. T.: Perplexing coordination behaviour of potentially bridging bipyridyl-type ligands in the coordination chemistry of zinc and cadmium 1,1-dithiolate compounds. Crystals 8 (2018) 18.10.3390/cryst8010018Search in Google Scholar
6. Broker, G. A.; Jotani, M. M.; Tiekink, E. R. T.: Bis[N-2-hydroxyethyl,N-methyldithiocarbamato-κ2S, S)′-4-{[(pyridin-4-ylmethylidene)hydrazinylidene}methyl]pyridine-κN1)zinc(II): crystal structure and Hirshfeld surface analysis. Acta Crystallogr. E73 (2017) 1458–1464.10.1107/S2056989017012725Search in Google Scholar PubMed PubMed Central
7. Avila, V.; Tiekink, E. R. T.: catena-Poly[[bis(O,O′-diisopropyl dithiophosphato-κ2S,S′)zinc(II)]-μ-1,2-bis(3-pyridylmethylene)hydrazine-κ2N:N′]. Acta Crystallogr. E62 (2006) m3530–m3531.10.1107/S160053680605001XSearch in Google Scholar
8. Tiekink, E. R. T.: Exploring the topological landscape exhibited by binary zinc-triad 1,1-dithiolates. Crystals 8 (2018) 292.10.3390/cryst8070292Search in Google Scholar
© 2019 Yee Seng Tan et al., published by De Gruyter, Berlin/Boston
This work is licensed under the Creative Commons Attribution 4.0 Public License.