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BY-NC-ND 3.0 license Open Access Published by De Gruyter (O) December 3, 2016

Crystal structure of (E)-3-((naphthalen-1-ylimino)methyl)-4-nitrophenol, C17H12N2O3

  • Hakan Bülbül , Yavuz Köysal EMAIL logo , Mustafa Macit , Rukiye Yaman and Necmi Dege

Abstract

C17H12N2O3, monoclinic, P21/c (no. 14), a = 7.2641(5) Å, b = 12.3968(6) Å, c = 16.1786(13) Å, β = 108.200(6)°, V = 1384.02(16) Å3, Z = 4, Rgt(F) = 0.0905, wRref(F2) = 0.1928, T = 293(2) K.

CCDC no.:: 1484947

The asymmetric unit of the title crystal structure is shown in the figure. Tables 1 and 2 contain details on crystal structure and measurement conditions and a list of the atoms including atomic coordinates and displacement parameters.

Table 1

Data collection and handling.

Crystal:Orange plate
Size:0.60 × 0.27 × 0.03 mm
Wavelength:Mo Kα radiation (0.71073 Å)
μ:1.0 cm−1
Diffractometer, scan mode:STOE IPDS 2, ω-scans
2θmax, completeness:55.2°, >99%
N(hkl)measured, N(hkl)unique, Rint:8884, 3177, 0.143
Criterion for Iobs, N(hkl)gt:Iobs > 2 σ(Iobs), 1601
N(param)refined:199
Programs:Stoe programs [10], SHELX [11], Platon [12, 13]
Table 2

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2).

AtomxyzUiso*/Ueq
C10.8113(4)0.3274(2)0.57499(17)0.0462(7)
C20.8423(4)0.2748(2)0.65536(18)0.0509(7)
C30.8641(5)0.1639(2)0.6624(2)0.0587(8)
H30.88460.13070.71610.070*
C40.8556(5)0.1028(2)0.5910(2)0.0611(8)
H40.86950.02830.59600.073*
C50.8261(5)0.1523(2)0.51121(19)0.0533(7)
C60.8030(4)0.2627(2)0.50383(19)0.0516(7)
H60.78120.29470.44960.062*
C70.7847(6)0.4444(2)0.5587(2)0.0713(10)
H70.79290.48830.60640.086*
C80.7328(5)0.5982(2)0.4770(2)0.0560(7)
C90.6874(4)0.6331(2)0.3892(2)0.0505(7)
C100.6638(5)0.5607(3)0.3195(2)0.0645(9)
H100.67970.48710.33050.077*
C110.6181(6)0.5975(3)0.2363(2)0.0784(10)
H110.60150.54890.19080.094*
C120.5959(6)0.7083(3)0.2186(3)0.0858(12)
H120.56360.73260.16150.103*
C130.6210(5)0.7801(3)0.2842(3)0.0789(11)
H130.60850.85340.27160.095*
C140.6659(5)0.7457(2)0.3714(2)0.0595(8)
C150.6900(5)0.8186(2)0.4408(3)0.0697(9)
H150.67610.89220.42940.084*
C160.7331(6)0.7832(2)0.5236(3)0.0745(10)
H160.74810.83250.56860.089*
C170.7554(6)0.6727(2)0.5422(2)0.0715(10)
H170.78600.64950.59950.086*
N10.8553(4)0.3349(2)0.73374(17)0.0608(7)
N20.7547(5)0.48626(19)0.49209(18)0.0784(10)
O10.8209(4)0.08877(15)0.44248(14)0.0751(7)
H10.80250.12620.39890.113*
O20.8685(4)0.2842(2)0.80081(15)0.0903(9)
O30.8545(5)0.4327(2)0.73294(17)0.0969(9)

Source of material

(E)-3-((naphthalen-1-ylimino)methyl)-4-nitrophenol was prepared by refluxing a mixture of a solution containing 5-hydroxy-2-nitro-benzaldehyde (8.4 mg, 0.05 mmol) in ethanol (20 mL) and a solution containing 1-naphthylamine (7.2 mg, 0.05 mmol) in ethanol (20 mL). The reaction mixture was stirred for 5 h under reflux. Single crystals of the title compound were obtained by slow evaporation of an ethanolic solution (Yield 70%; m.p. 458–459 K).

Experimental details

For least-squares refinement of the crystal structure all H atoms were placed in calculated positions using a suitable riding model, with C—H distances of 0.93 Å and O—H distances of 0.82 Å, Uiso(H) = 1.2Ueq(C) and 1.5Ueq(O).

Discussion

Schiff bases are an important class of organic molecules which contain imine and azomethine groups. Schiff bases were first discovered by Hugo Schiff in 1864 [1]. Some Schiff bases show biological activities such as anti-inflammatory, antimicrobial, anticonvulsant, anticancer, analgesic etc. [2; 3; 4]. And also, their metal complexes often exhibit antibacterial, antiviral, fungicidal or antitubarculoral activity [5, 6].

In the title compound, C17H12N2O3, the naphthalen and phenyl ring groups are planar with an r.m.s. deviation of 0.010(4) Å for atom C12 in naphthalen group and −0.005(3) Å for atom C5 in the phenyl group, respectively. However the whole molecule is also nearly planar with the dihedral angle is 5.79(8)° between the related ring systems. The torsion angle around the C1—C7—N2—C8 is −178.8(3)° shows that the molecular structure has E configuration. The C = N bond length is 1.154(4) Å, slightly shorther than in related structures [7, 8].

The molecular structure contains O—H⋯O type intermolecular and C—H⋯O and C—H⋯N type intramolecular H bonds. O1—H1⋯O2 (with symmetry code: x, −y + 1/2, + z−1/2) creates an infinite chain along the c-axis and generates a C(8) motif [9]. S(6) and S(5) loops are created by the intramolecular H bonds C7—H7⋯O3 and C10—H10⋯N2, respectively [9]. There is also π-π stacking which contributes to stabilization between the ring centroids of Cg(1)—Cg(2) [distance between ring centroids is 3.695(2) Å with symmetry code: 1−x, 1−y, 1−z where Cg(1) belongs to the C1—C6 ring and Cg(2) to C8/C9/C14/C15/C16/C17].

Acknowledgements:

The single crystal X-ray data were collected at the Faculty of Arts and Sciences, Ondokuz Mayıs University, Turkey, using a Stoe IPDS II diffractometer and crystallographic data were deposited under CCDC number 1484947.

References

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Received: 2016-6-15
Accepted: 2016-11-2
Published Online: 2016-12-3
Published in Print: 2017-1-1

©2016 Hakan Bülbül et al., published by De Gruyter.

This work is licensed under the Creative Commons Attribution-NonCommercial-NoDerivatives 3.0 License.

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