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Structural biology of the aldo-keto reductase family of enzymes

Catalysis and cofactor binding

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Abstract

The aldo-keto reductases (AKR) comprise a large family of oxidoreductases with importance to both health and industrial applications. The redox chemistry of the AKRs is dependent on NAD(P)H as a cofactor. Despite a wealth of structural and biochemical data relating to the interaction of AKRs with specific inhibitors, much less is known regarding the interactions with cofactor or substrate. In particular, while many X-ray structures are available for AKR/inhibitor complexes, they are only a few examples where apo- and holo-forms can be directly compared. Thus, while the role of the cofactor in the redox chemistry is generally understood, the details of the structural dynamics associated with cofactor binding are less clear. Likewise, the structural details of both cofactor and substrate specificity are limited. In this review, we focus on details of the structural biology and molecular dynamics associated with catalysis, cofactor, and substrate binding as elucidated for those AKRs for which apo- and holo-structures are available. Understanding such dynamics may identify a new direction in the design of specific inhibitors.

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References

  1. Jez, J. M., Flynn, T. G., and Penning, T. M. (1997) A nomenclature system for the aldo-keto reductase superfamily. Adv. Exp. Med. Biol. 414, 579–600.

    PubMed  CAS  Google Scholar 

  2. Jez, J. M., Flynn, T. G., and Penning, T. M. (1997) A new nomenclature for the aldo-keto reductase superfamily. Biochem. Pharm. 54, 639–647.

    Article  PubMed  CAS  Google Scholar 

  3. Welle, R., Schroder, G., Schiltz, E., Grisebach, H., and Schroder, J. (1991) Induced plantresponses to pathogen attack—analysis and heterologous expression of the key enzyme in the biosynthesis of phytoalexins in soybean (glycine-max L merr cv harosoy-63). Eur. J. Biochem. 196, 423–430.

    Article  PubMed  CAS  Google Scholar 

  4. Bruce, N. C., Willey, D. L., Coulson, A. F., and Jeffery, J. (1994) Bacterial morphine dehydrogenase further defines a distinct superfamily of oxidoreductases with diverse functional activities. Biochem. J. 299, 805–811.

    PubMed  CAS  Google Scholar 

  5. Wilson, D. K., Nakano, T., Petrash, J. M., and Quiocho, F. A. (1995) 1.7 Å Structure of FR-1, a fibroblast growth factor induced member of the aldo-keto reductase family complexed with coenzyme and inhibitor. Biochemistry 34, 14,323–14,330.

    CAS  Google Scholar 

  6. Penning, T. M., Pawlowski, J. E., Schlegel, B. P., et al. (1996) Mammalian 3 alpha-hydroxysteroid dehydrogenases. Steroids 61, 508–523.

    Article  PubMed  CAS  Google Scholar 

  7. Kador, P. F. and Kinoshita, J. H. (1984) Diabetic and galactosaemic cataracts. Ciba Found Symp. 106, 110–131.

    PubMed  CAS  Google Scholar 

  8. Kinoshita, J. H. and Nishimura, C. (1988) The involvement of aldose reductase in diabetic complications. Diabetes Metab. Rev. 4, 323–337.

    Article  PubMed  CAS  Google Scholar 

  9. Turner, A. J. and Tipton, K. F. (1972) The characterization of two reduced nicotinamide-adenine dinucleotide phosphate-linked aldehyde reductases from pig brain. Biochem. J. 130, 765–772.

    PubMed  CAS  Google Scholar 

  10. Penning, T. M. and Talalay, P. (1983) Inhibition of a major NAD(P)-linked oxidoreductase from rat liver cytosol by steroidal and nonsteroidal anti-inflammatory agents and by prostaglandin Proc. Natl. Acad. Sci. USA 80, 4304–4308.

    Article  Google Scholar 

  11. Anderson, S., Marks, C. B., Lazarus, R., et al. (1985) Production of 2-keto-l-gulonate, an intermediate in l-ascorbate synthesis, by a genetically modified. Erwinia herbicola. Science 230, 144–149.

    Article  CAS  PubMed  Google Scholar 

  12. Grindley, J. F., Payton, M. A., van de Pol, H., and Hardy, K. G. (1988) Conversion of glucose to 2-keto-l-gulonate, an intermediate in L-ascorbate synthesis, by a recombinant strain of Erwinia citreus. Appl. Environ. Microbiology 54, 1770–1775.

    CAS  Google Scholar 

  13. Khurana, S., Powers, D. B., Anderson, S., and Blaber, M. (1998) Crystal structure of 2,5-diketo-d-gluconic acid reductase A complexed with NADPH at 2.1 Å resolution. Proc. Natl. Acad. Sci. USA 95, 6768–6773.

    Article  PubMed  CAS  Google Scholar 

  14. el-Kabbani, O., Judge, K., Ginell, S. L., Myles, D. A., DeLucas, L. J., and Flynn, T. G. (1995) Structure of porcine aldehyde reductase holoenzyme. Nat. Struct. Biol. 2, 687–692.

    Article  PubMed  CAS  Google Scholar 

  15. Flynn, T. G., Green, N. C., Bhatia, M. B., and el-Kabbani, O. (1995) Structure and mechanism of aldehyde reductase. Adv. Exp. Med. Biol. 372, 193–201.

    PubMed  CAS  Google Scholar 

  16. Rondeau, J. M., Tete-Favier, F., Podjarny, A., et al. (1992) Novel NADPH-binding domain revealed by the crystal structure of aldose reductase. Nature 355, 469–472.

    Article  PubMed  CAS  Google Scholar 

  17. Wilson, D. K., Bohren, K. M., Gabbay, K. H., and Quiocho, F. A. (1992) An unlikely sugar substrate site in the 1.65 Å structure of the human aldose reductase holoenzyme implicated in diabetic complications. Science 257, 81–84.

    Article  PubMed  CAS  Google Scholar 

  18. Ye, Q., Hyndman, D., Li, X., Flynn, T. G., and Jia, Z. (2000) Crystal structure of CHO reductase, a member of the aldo-keto reductase superfamily. Proteins 38, 41–48.

    Article  PubMed  CAS  Google Scholar 

  19. Hoog, S. S., Pawlowski, J. E., Alzari, P. M., Penning, T. M., and Lewis, M. (1994) Three-dimensional structure of rat liver 3α-hydroxysteroid/dihydrodiol dehydrogenase: a member of the aldo-keto reductase superfamily. Proc. Natl. Acad. Sci. USA 91, 2517–2521.

    Article  PubMed  CAS  Google Scholar 

  20. Sanli, G. and Blaber, M. (2001) Structural assembly of the active site in an aldo-keto reductase by NADPH cofactor. J. Mol. Biol. 309, 1209–1218.

    Article  PubMed  CAS  Google Scholar 

  21. Gulbis, J. M., Mann, S., and MacKinnon, R. (1999) Structure of a voltage-dependent K+ channel beta subunit. Cell 97, 943–952.

    Article  PubMed  CAS  Google Scholar 

  22. Kavanagh, K. L., Klimacek, M., Nidetzky, B., and Wilson, D. K. (2002) The structure of apo and holo forms of xylose reductase, a dimeric aldo-keto reductase from Candida tenuis. Biochemistry 41, 8785–8795.

    Article  PubMed  CAS  Google Scholar 

  23. Jez, J. M., Bennett, M. J., Schlegel, B. P., Lewis, M., and Penning, T. M. (1997) Comparative anatomy of the aldo-keto reductase superfamily. Biochem. J. 326, 625–636.

    PubMed  CAS  Google Scholar 

  24. Kubiseski, T. J., Hyndman, D. J., Morjana, N. A., and Flynn, T. C. (1992) Studies on pig muscle aldose reductase: kinetic mechanism and evidence for a slow conformational change upon coenzyme binding. J. Biol. Chem. 267, 6510–6517.

    PubMed  CAS  Google Scholar 

  25. Grimshaw, C. E., Shahbaz, M., and Putney, C. G. (1990) Mechanistic basis for non-linear kinetics of aldehyde reduction catalyzed by aldose reductase. Biochemistry 29, 9947–9955.

    Article  PubMed  CAS  Google Scholar 

  26. Borhani, D. W., Harter, T. M., and Petrash, J. M. (1992) The crystal structure of the aldose reductase: NADPH binary complex. J. Biol. Chem. 267, 24,841–24,847.

    CAS  Google Scholar 

  27. el-Kabbani, O., Wilson, D. K., Petrash, M., and Quiocho, F. A. (1998) Structural features of the aldose reductase and aldehyde reductase inhibitor-binding sites. Mol. Vis. 4, 19.

    PubMed  CAS  Google Scholar 

  28. Urzhumtsev, A., Tete-Favier, F., Mitschler, A. et al. (1997) A “specificity” pocket inferred from the crystal structures of the complexes of aldose reductase with the pharmaceutically important inhibitors tolrestat and sorbinil. Structure 5, 601–612.

    Article  PubMed  CAS  Google Scholar 

  29. Banner, D. W., Bloomer, A. C., Petsko, G. A., et al. (1975) Structure of chicken muscle triose phosphate isomerase determined crystallographically at 2.5 angstrom resolution using amino acid sequence data. Nature 255, 609–614.

    Article  PubMed  CAS  Google Scholar 

  30. Farber, G. K. and Petsko, G. A. (1990) The evolution of α/β barrel enzymes. Trends Biochem. Sci. 15, 228–234.

    Article  PubMed  CAS  Google Scholar 

  31. Branden, C.-I. (1991) The TIM barrel—the most frequently occurring folding motif in proteins. Curr. Opin. Struct. Biol. 1, 978–983.

    Article  Google Scholar 

  32. Copley, R. R. and Bork, P. (2000) Homology among (betaalpha)(8) barrels: implications for the evolution of metabolic pathways. J. Mol. Biol. 303, 627–641.

    Article  PubMed  CAS  Google Scholar 

  33. el-Kabbani, O., Green, N. C., Lin, G. D., et al. (1994) Structures of human and porcine aldehyde reductase—an enzyme implicated in diabetic complications. Acta Crystallogr. D: Biol. Crystallogr. 50, 859.

    Article  CAS  Google Scholar 

  34. Yoshida, M., Kuroki, Y., Kobayashi, E., and Tamaoki, B. (1992) Kinetic mechanism of reduction of testosterone by hepatic 5-beta-reductase of chicken and inhibition of the reductase-activity by a secosteroid, an azasteroid and glycyrrhetinic acid. J. Steroid Biochem. Mol. Biol. 41, 29–36.

    Article  PubMed  CAS  Google Scholar 

  35. Davidson, W. S. and Flynn, T. G. (1979) Kinetics and mechanism of action of aldehyde reductase from pig kidney. Biochem. J. 177, 595–601.

    PubMed  CAS  Google Scholar 

  36. Askonas, L. J., Ricigliano, J. W., and Penning, T. M. (1991) The kinetic mechanism catalysed by homogeneous rat liver 3 alpha-hydroxysteroid dehydrogenase. Evidence for binary and ternary dead-end complexes containing nonsteroidal anti-inflammatory drugs. Biochem. J. 278, 835–841.

    PubMed  CAS  Google Scholar 

  37. Harrison, D. H., Bohren, K. M., Ringe, D., Petsko, G. A., and Gabbay, K. H. (1994) An anion binding site in human aldose reductase: Mechanistic implications for the binding of citrate, cacodylate, and glucose 6-phosphate. Biochemistry 33, 2011–2020.

    Article  PubMed  CAS  Google Scholar 

  38. Boghosian, R. A. and McGuinness, E. T. (1981) Pig brain aldose reductase: a kinetic study using the centrifugal fast analyzer. Int. J. Biochem. 13, 909–914.

    Article  PubMed  CAS  Google Scholar 

  39. Ryle, C. M. and Tipton, K. F. (1985) Kinetic studies with the low-Km aldehyde reductase from ox brain. Biochem. J. 227, 621–627.

    PubMed  CAS  Google Scholar 

  40. Schlegel, B. P., Jez, J. M., and Penning, T. M. (1998) Mutagenesis of 3 alpha-hydroxysteroid dehydrogenase reveals a “push-pull” mechanism for proton transfer in aldo-keto reductases. Biochemistry 37, 3538–3548.

    Article  PubMed  CAS  Google Scholar 

  41. Bennett, M. J., Schlegel, B. P., Jez, J. M., Penning, T. M., and Lewis, M. (1996) Structure of 3 alpha-hydroxysteroid/dihydrodiol dehydrogenase complexed with NADP+. Biochemistry 35, 10,702–10,711.

    Article  CAS  Google Scholar 

  42. Bennett, M. J., Albert, R. H., Jez, J. M., Ma, H., Penning, T. M., and Lewis, M. (1997) Steroid recognition and regulation of hormone action: crystal structure of testosterone and NADP+ bound to 3 alpha-hydroxysteroid/dihydrodiol dehydrogenase. Structure 5, 799–812.

    Article  PubMed  CAS  Google Scholar 

  43. Wilson, D. K., Tarle, I., Petrash, J. M., and Quiocho, F. A. (1993) Refined 1.8 A structure of human aldose reductase complexed with the potent inhibitor zopolrestat. Proc. Natl. Acad. Sci USA 90, 9847–9851.

    Article  PubMed  CAS  Google Scholar 

  44. Bohren, K. M., Bullock, B., Wermuth, B., and Gabbay, K. H. (1989) The aldo-keto reductase superfamily. cDNAs and deduced amino acid sequence of human aldehyde and aldose reductases. J. Biol. Chem. 264, 9547–9551.

    PubMed  CAS  Google Scholar 

  45. Bohren, K. M. and Gabbay, K. H. (1993) Cys298 is responsible for reversible thiol-induced variation in aldose reductase activity. Adv. Exp. Med. Biol. 328, 267–277.

    PubMed  CAS  Google Scholar 

  46. Petrash, J. M., Harter, T., Tarle, I., and Borhani, D. (1993) Kinetic alteration of human aldose reductase by mutagenesis of cysteine residues. Adv. Exp. Med. Biol. 328, 289–300.

    PubMed  CAS  Google Scholar 

  47. Liu, S. Q., Bhatnagar, A., and Srivastava, S. K. (1993) Bovine lens aldose reductase. pH-dependence of steady-state kinetic parameters and nucleotide binding. J. Biol. Chem. 268, 25,494–25,499.

    CAS  Google Scholar 

  48. Bohren, K. M., Grimshaw, C. E., Lai, C.-J., et al. (1994) Tyrosine-48 is the proton donor and histidine-110 directs substrate stereochemical selectivity in the reduction of human aldose reductase: enzyme kinetics and crystal structure of the Y48H mutant enzyme. Biochemistry 33, 2021–2032.

    Article  PubMed  CAS  Google Scholar 

  49. Barski, O. A., Gabbay, K. H., and Bohren, K. M. (1996) The C-terminal loop of aldehyde reductase determines the substrate and inhibitor specificity. Biochemistry 35, 14,276–14,280.

    Article  CAS  Google Scholar 

  50. Tarle, I., Borhani, D. W., Wilson, D. K., Quiocho, F. A., and Petrash, J. M. (1993) Probing the active site of human aldose reductase. Sitedirected mutagenesis of Asp-43, Tyr-48, Lys-77, and His-110. J. Biol. Chem. 268, 25,687–25,693.

    CAS  Google Scholar 

  51. Khurana, S., Sanli, G., Powers, D. B., Anderson, S., and Blaber, M. (2000) Molecular modeling of substrate binding in wild-type and mutant Corynebacteria 2,5-diketo-d-gluconate reductases. PROT: Struct. Funct. Genet. 39, 68–75.

    Article  CAS  Google Scholar 

  52. Varnai, P., Richards, W. G., and Lyne, P. D. (1999) Modelling the catalytic reaction in human aldose reductase. Proteins 37, 218–227.

    Article  PubMed  CAS  Google Scholar 

  53. Dubois, J., Chapman, S. K., Mathews, F. S., Reid, G. A., and Lederer, F. (1990) Substitution of Tyr254 with Phe at the active site of flavocytochrome b2: consequences on catalysis of lactate dehydrogenase. Biochemistry 29, 6393–6400.

    Article  PubMed  CAS  Google Scholar 

  54. Barski, O. A., Gabbay, K. H., Grimshaw, C. E., and Bohren, K. M. (1995) Mechanism of human aldehyde reductase: characterization of the active site pocket. Biochemistry 34, 11,264–11,275.

    Article  CAS  Google Scholar 

  55. Pawlowski, J. E. and Penning, T. M. (1994) Overexpression and mutagenesis of the cDNA for rat liver 3α-hydroxysteroid/dihydrodiol dehydrogenase. J. Biol. Chem. 269, 13,502–13,510.

    CAS  Google Scholar 

  56. Carper, D. A., Hohman, T. C., and Old, S. E. (1995) Residues affecting the catalysis and inhibition of rat lens aldose reductase. Biochim. Biophys. Acta 1246, 67–73.

    PubMed  Google Scholar 

  57. Klimacek, M., Szekely, M., Griessler, R., and Nidetzky, B. (2001) Exploring the active site of yeast xylose reductase by site-directed mutagenesis of sequence motifs characteristic of two dehydrogenase/reductase family types. FEBS Lett. 500, 149–152.

    Article  PubMed  CAS  Google Scholar 

  58. Grimshaw, C. E., Bohren, K. M., Lai, C. J., and Gabbay, K. H. (1965) Human aldose reductase: pK of tyrosine 48 reveals the preferred ionization state for catalysis and inhibition. Biochemistry 34, 14,374–14,384.

    Google Scholar 

  59. Grimshaw, C. E., Bohren, K. M., Lai, C. J., and Gabbay, K. H. (1995) Human aldose reductase: subtle effects revealed by rapid kinetic studies of the C298A mutant enzyme. Biochemistry 34, 14,366–14,373.

    CAS  Google Scholar 

  60. Grimshaw, C. E., Bohren, K. M., Lai, C. J., and Gabbay, K. H. (1995) Human aldose reductase: rate constants for a mechanism including interconversion of ternary complexes by recombinant wild-type enzyme. Biochemistry 34, 14,356–14,365.

    CAS  Google Scholar 

  61. Ye, Q., Hyndman, D., Green, N. C., Li, L., Jia, Z., and Flynn, T. G. (2001) The crystal structure of an aldehyde reductase Y50F mutant-NADP complex and its implications for substrate binding. Chem. Biol. Interact. 130–132, 651–658.

    Article  PubMed  Google Scholar 

  62. Ehrig, T., Bohren, K. M., Prendergast, F. G., and Gabbay, K. H. (1994) Mechanism of aldose reductase inhibition: binding of NADP+/NADPH and alrestatin-like inhibitors. Biochemistry 33, 7157–7165.

    Article  PubMed  CAS  Google Scholar 

  63. Wermuth, B. and von Wartburg, J. P. (1982) Aldose reductase from human tissues. Methods Enzymol. 89, 181–186.

    Article  PubMed  CAS  Google Scholar 

  64. Worrall, D. M., Daly, A. K., and Mantle, T. J. (1986) Kinetic studies on the major form of aldehyde reductase in ox kidney: a general kinetic mechanism to explain substrate-dependent mechanisms and the inhibition by anticonvulsants. J. Enzyme Inhib. 1, 163–168.

    PubMed  CAS  Google Scholar 

  65. Tipton, K. F. and Ryle, C. M. (1985) Some properties of the “low-Km” aldehyde reductase from ox brain. Prog. Clin. Biol. Res. 174, 241–250.

    PubMed  CAS  Google Scholar 

  66. Grimshaw, C. E., Shahbaz, M., Jahangiri, G., Putney, C. G., McKercher, S. R., and Mathur, E. J. (1989) Kinetic and structural effects of activation of bovine kidney aldose reductase. Biochemistry 28, 5343–5353.

    Article  PubMed  CAS  Google Scholar 

  67. De Jongh, K. S., Schofield, P. J., and Edwards, M. R. (1987) Kinetic mechanism of sheep liver NADPH-dependent aldehyde reductase. Biochem. J. 242, 143–150.

    PubMed  Google Scholar 

  68. Bohren, K. M., Grimshaw, C. E., and Gabbay, K. H. (1992) Catalytic effectiveness of human aldose reductase. J. Biol. Chem. 267, 20,965–20,970.

    CAS  Google Scholar 

  69. Hur, E. and Wilson, D. K. (2001) The crystal structure of the GCY1 protein from S. cerevisiae suggests a divergent aldo-keto reductase catalytic mechanism. Chem. Biol. Interact. 130–132, 527–536.

    Article  PubMed  Google Scholar 

  70. Ma, H., Ratnam, K., and Penning, T. M. (2000) Mutation of nicotinamide pocket residues in rat liver 3 alpha-hydroxysteroid dehydrogenase reveals different modes of cofactor binding. Biochemistry 39, 102–109.

    Article  PubMed  CAS  Google Scholar 

  71. Kubiseski, T. J. and Flynn, T. G. (1995) Studies on human aldose reductase: probing the role of arginine 268 by site directed mutagenesis. J. Biol. Chem. 270, 16,911–16,917.

    CAS  Google Scholar 

  72. Powers, D. P. 1996. In Structure/function studies of 2,5-diketo-d-gluconic acid reductases. Thesis, University of Medicine and Dentistry of New Jersey, Piscataway, NJ, p. 163.

    Google Scholar 

  73. Karplus, P. A. and Schulz, G. E. (1987) Refined structure of glutathione reductase at 1.54 A resolution. J. Mol. Biol. 195, 701–729.

    Article  PubMed  CAS  Google Scholar 

  74. Bohren, K. M., Page, J. L., Shankar, R., Henry, S. P., and Gabbay, K. H. (1991) Expression of human aldose and aldehyde reductases. Sitedirected mutagenesis of a critical lysine 262. J. Biol. Chem. 266, 24,031–24,037.

    CAS  Google Scholar 

  75. Hayward, S. and Berendsen, H. J. C. (1998) Systematic analysis of domain motions in proteins from conformational changew; new results on citrate synthase, and T4 lysozyme. PROT: Struct. Funct. Genet. 30, 144–154.

    Article  CAS  Google Scholar 

  76. Kubiseski, T. J., Green, N. C., Borhani, D. W., and Flynn, T. G. (1994) Studies on pig aldose reductase. Identification of an essential arginine in the primary and tertiary structure of the enzyme. J. Biol. Chem. 269, 2183–2188.

    PubMed  CAS  Google Scholar 

  77. Banta, S., Swanson, B. A., Wu, S., Jarnagin, A., and Anderson, S. (2002) Optimizing an artificial metabolic pathway: engineering the cofactor specificity of Corynebacterium 2,5-diketo-d-gluconic acid reductase for use in vitamin C biosynthesis. Biochemistry 41, 6226–6236.

    Article  PubMed  CAS  Google Scholar 

  78. Banta, S., Swanson, B. A., Wu, S., Jarnagin, A., and Anderson, S. (2002) Alteration of the specificity of the cofactor-binding pocket of Corynebacterium 2,5-diketo-d-gluconic acid reductase A. Proc. Eng. 15, 131–140.

    Article  CAS  Google Scholar 

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Sanli, G., Dudley, J.I. & Blaber, M. Structural biology of the aldo-keto reductase family of enzymes. Cell Biochem Biophys 38, 79–101 (2003). https://doi.org/10.1385/CBB:38:1:79

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