Abstract
The advent of molecular genetic techniques has brought forth new procedures for in situ chromosomal analysis. One of these techniques is the primed in situ labeling (PRINS) procedure, which constitutes a fast and efficient alternative to conventional fluorescence in situ hybridization for nucleic acid detection. Based on the use of chromosome-specific primers, the PRINS method combines the high sensitivity of the PCR reaction with the cytological localization of DNA sequences. Since its introduction, the PRINS protocol has been optimized, and numerous applications have been developed. The technique has thus proved to be a useful tool for in situ chromosomal screening, and has become a simple and efficient complement to conventional and molecular cytogenetic methods.
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Pinkel, D. T., Straume, T., and Gray, J. M. (1986) Cytogenetic analysis using quantitative, high-sensitivity, fluorescence hybridization. Proc. Natl. Acad. Sci. USA 83, 2934–2938.
Koch, J. E., Kolvraa, S., Petersen, K. B., Gregersen, N., and Bolund, L. (1989) Oligonucleotide-priming methods for the chromosome-specific labeling of alphasatellite DNA in situ. Chromosoma 98, 259–265.
Liehr, T. and Claussen, U. (2002) Current developments in human molecular cytogenetic techniques. Curr. Molec. Med. 2, 283–297.
Levsky, J. M. and Singer, R. H. (2003) Fluorescence in situ hybridization: past, present and future. J. Cell Sci. 116, 2833–2838.
Therkelsen, A. J., Nielsen, A., and Kolvraa, S. (1997) Localisation of the classical DNA satellites on human chromosomes as determined by primed in situ labelling (PRINS). Hum. Genet. 100, 322–326.
Koch, J., Hindkjaer, J., Kolvraa, S., and Bolund, L. (1995) Construction of a panel of chromosome-specific oligonucleotide probes (PRINS-primers) useful for the identification of individual human chromosomes in situ. Cytogenet. Cell Genet. 71, 142–147.
Pellestor, F., Girardet, A., Lefort, G., Andréo, B., and Charlieu, J.-P. (1995) Selection of chromosome specific primers and their use in simple and double PRINS technique for rapid in situ identification of human chromosomes. Cytogenet. Cell Genet. 70, 138–142.
Jorgensen, A. L., Bostock, C. J., and Bak, A. L. (1987) Homologous subfamilies of human alphoid repetitive DNA on different nucleolus organizing chromosomes. Proc. Natl. Acad. Sci. USA 84, 1075–1079.
Therkelsen, A. J., Nielsen, A., Koch, J., Hindkjaer, J., and Kolvraa, S. (1995) Staining of human telomeres with primed in situ labeling (PRINS). Cytogenet. Cell Genet. 68, 115–118.
Krejci, K. and Koch, J. (1999) An in situ study of variant telomeric repeats in human chromosomes. Genomics 58, 202–206.
Koch, J., Hindkjaer, J., Mogensen, J, Kolvraa, S., and Bolund, L. (1991) An improved method for chromosome-specific labeling of satellite DNA in situ by using denatured double-stranded DNA probes as primers in a primed in situ labeling (PRINS) procedure. Genet. Anal. Tech. Appl. 8, 171–178.
Hindkjaer, J., Koch, J., Terkelsen, C., Brandt, C. A., Kolvraa, S., and Bolund, L. (1994) Fast, sensitive, multicolour detection of nucleic acids in situ by primed in situ labeling (PRINS). Cytogenet. Cell Genet. 66, 152–154.
Gosden, J. and Lawson, D. (1995) Instant PRINS: a rapid method for chromosome identification by detecting repeated sequences in situ. Cytogenet. Cell Genet. 68, 57–60.
Gosden, J. and Lawson, D. (1994) Rapid chromosome identification by oligonucleotide-primed in situ DNA synthesis (PRINS). Hum. Mol. Genet. 3, 931–936.
Paskins, L., Brownie, J., and Bull, J. (1999) In situ polymerase chain reaction and cycling primed in situ amplification: improvements and adaptations. Histochem. Cell Biol. 111, 411–416.
Harrer, T., Schwinger, E., and Mennicke, K. (2001) A new techniquefor cyclic in situ amplification and a case report about amplification of a single copy gene sequence in human metaphase chromosomes through PCR-PRINS. Hum. Mutat. 17, 131–140.
Yan, J., Bronsard, M., and Drouin, R. (2001) Creating a new color by omission of 3’ end blocking step for simultaneous detection of different chromosomes in multi-PRINS technique. Chromosoma 109, 565–570.
Werner, M., Wilkens, L., Nasarek, A., Tchinda, J., and Komminoth, P. (1997) Detection of karyotype changes in interphase cells: oligonucleptide-primed in situ labelling versus fluorescence in situ hybridization. Virchows Arch. 430, 381–387.
Gu, H. F., Lind, M. I., Wieslander, L., Landegren, U., Soderhall, K., and Melefors, O. (1997) Using PRINS for gene mapping in polytene chromosomes. Chromosome Res. 5, 463–465.
Sola, L., Gabrielli, I., De Innocentiis, S., and Gornung, E. (1999) Chromosomal localization of zebrafish AluI repeats by primed in situ (PRINS) labeling. Cytogenet. Cell Genet. 84, 28–30.
Martins, C. and Galetti, P. M. (1999) Chromosomal localization of 5S rDNA genes in Leporinus fish (Anostomidae, Characiformes). Chromosome Res. 7, 363–367.
Thomas, H. M., Williams, K., and Harper, J. A. (1996) Labelling telomeres of cereals, grasses and clover by primed in situ DNA labelling. Chromosome Res. 4, 182–184.
Abbo, S., Dunford, R. P., Miller, T. E., Reader, S. M., and King, I. P. (1993) Primer-mediated in situ detection of the B-hordein gene cluster on barley chromosome 1H. Proc. Natl. Acad. Sci. USA 90, 11821–11824.
Pich, U., Meister, A., Macas, J., Dolezel, J., Lucretti, S., and Schubert, I. (1995) Primed in situ labelling facilitates flow sorting of similar sized chromosomes. Plant J. 7, 1039–1044.
Russo, A., Tommasi, A. M., and Renzi, L. (1996) Detection of minor and major satellite DNA in cytokinesis-blocked mouse splenocytes by a PRINS tandem labelling approach. Mutagenesis 11, 547–552.
Gu, F. and Hindkjaer, J. (1996) Primed in situ labeling (PRINS) detection of the telomeric (CCCTAA)n sequences in chromosomes of domestic animals. Mammal. Genome 7, 231–232.
Lavoie, J., Bronsard, M., Lebel, M., and Drouin, R. (2003) Mouse telomere analysis using an optimized primed in situ (PRINS) labeling technique. Chromosoma 111, 438–444.
Speel, E. J. M., Lawson, D., Hopman, A. H. N., and Gosden, J. (1995) Multi-PRINS: multiple sequential oligonucleotide primed in situ DNA synthesis reaction label specific chromosomes and produce bands. Hum. Genet. 95, 29–33.
Mennicke, K., Yang, J., Hinrichs, F., Muller, A., Diercks, P., and Schwinger, E. (2003) Validation of primed in situ labeling for interphase analysis of chromosomes 18, X and Y in uncultured amniocytes. Fetal Diagn. Ther. 18, 114–121.
Pellestor, F., Girardet, A., Andréo, B., Lefort, G., and Charlieu, J. P. (1996) The PRINS technique: potential use for rapid preimplantation embryo chromosome screening. Mol. Hum. Reprod. 2, 135–138.
Hindkjaer, J., Brandt, C. A., Stromkjaer, H., Koch, J., Kolvraa, S., and Bolund, L. (1996) Primed in situ labelling (PRINS) as a rational procedure for identification of marker chromosomes using a panel of primers differentially tagging the human chromosomes. Clin. Genet. 50, 437–441.
Orsetti, B., Lefort, G., Boulot, P., Andréo, B., and Pellestor, F. (1998) Fetal cells in maternal blood: the use of primed in situ (PRINS) labelling technique for fetal cell detection and sex assessment. Prenat. Diagn. 18, 1014–1022.
Krabchi, K., Gros-Louis, F., Yan, J., Bronsard, M., Masse, J., Forest, J. C., and Drouin, R. (2001) Quantification of all fetal nucleated cells in maternal blood between the 18th and the 22nd weeks of pregnancy using molecular cytogenetic techniques. Clin. Genet. 60, 145–150.
Coullin, P., Andréo, B., Charlieu, J. P., Candelier, J. J., and Pellestor, F. (1997) Primed in situ (PRINS) labelling with Alu and satellite primers for rapid characterization of human chromosomes in hybrid cell lines. Chromosome Res. 5, 307–312.
Callen, D. F., Yip, M. Y., and Eyre, H. J. (1997) Rapid detection of euchromatin by Alu-PRINS: use in clinical cytogenetics. Chromosome Res. 5, 81–85.
Wilkens, L., Komminoth, P., Nasarek, A., Von Wasielewski, R., and Werner, M. (1997) Rapid detection of karyotype changes in interphase bone marrow cells by oligonucleotide primed in situ hybridization (PRINS). J. Pathol. 181, 368–373.
Ramael, M., Van Steelandt, H., Styven, G., Van Steenkiste, M., and Degroote, J. (1997) Application of the primed in situ labeled (PRINS) method for detection of numerical chromosomal aberration in paraffin embedded formalin fixed tissue of molar and non-molar pregnancies. Biochemica 2, 18–20.
Mogensen, J., Kolvraa, S., Hindkjaer, J., et al. (1991) Non,radioactive, sequencespecific detection of RNA in situ by primed in situ labeling (PRINS). Exp. Cell Res. 196, 92–98.
Bains, M. A., Agarwal, R., Pringle, J. H., Hutchinson, M. R., and Lauder, I. (1993) Flow cytometric quantitation of sequence-specific mRNA in hemopoietic cell suspensions by primer-induced in situ (PRINS) fluorescent nucleotide labeling. Exp. Cell Res. 208, 321–326.
Andersen, C. L., Koch, J., and Kjeldsen, E. (1998) CpG islands detected by self-primed in situ labeling (SPRINS). Chromosoma 107, 260–266.
Krejci, K. and Koch, J. (1998) Improved detection and comparative sizing of human chromosomal telomeres in situ. Chromosoma 107, 198–203.
Krejci, K. and Koch, J. (1999) An in situ study of variant telomeric repeats in human chromosomes. Genomics 58, 202–206.
Coullin, P., Philippe, C., Ravise, N., and Bernheim, A. (1999) Simultaneous fluorescence in situ hybridization (FISH) and R-banding by primed in situ labelling (PRINS). Chromosome Res 7, 241–242.
Pellestor, F., Quenesson, I., Coignet, L., et al. (1996) FISH and PRINS, a strategy for rapid chromosome screening: application to the assessment of aneuploidy in human sperm. Cytogenet. Cell Genet 72, 115–118.
Pellestor, F., Girardet, A., Coignet, L., Andréo, B., and Charlieu, J. P. (1996) Assessment of aneuploidy for chromosomes 8, 9, 13, 16 and 21 in human sperm by using primed in situ labeling technique. Am. J. Hum. Genet. 58, 797–802.
Pellestor, F., Girardet, A., Coignet, L., Andréo, B., Lefort, G., and Charlieu, J. P. (1997) Cytogenetic analysis of meiotic segregation in sperm from two males heterozygous for reciprocal translocations using PRINS and humster techniques. Cytogenet. Cell Genet. 78, 202–208.
Pellestor, F., Malki, S., Andréo, B., and Lefort, G. (2002) Ultra-rapid multicolor PRINS protocol for chromosome detection in human sperm. Chromosome Res 10, 359–367.
Pellestor, F., Anahory, T., Andréo, B., et al. (2004) Fast multicolour primed in situ protocol for chromosome identification in isolated cells may be used for human oocytes and polar bodies. Fertil. Steril. 81, 408–415.
Troyet, D. L., Goad, D. W., Xie, H., Rohrer, G. A., Alexander, L. J., and Beattie, C. W. (1994) Use of direct in situ single copy (DISC) PCR to physically map 5 porcine microsatellites. Cytogenet. Cell Genet. 67, 199–204.
Kadandale, J. S., Wachtel, S. S., Tunca, Y., Wilroy, R. S., Martens, P. R., and Tharapel, A. T. (2000) Localization of SRY by primed in situ labeling in XX and XY sex reversal. Am. J. Hum. Genet. 95, 71–74.
Cinti, C., Stuppia, L., and Maraldi, N. M. (2002) Combined use of PRINS and FISH in the study of the dystrophin gene. Am. J. Med. Genet. 107, 115–118.
Tharapel, A. T., Kadandale, J. S., Martens, P. R., Wachtel, S. S., and Wilroy, R. S. (2002) Prader Willi/Angelman and DiGeorge/Velocardiofacial syndrome deletions: diagnosis by primed in situ labeling (PRINS). Am. J. Med. Genet. 107, 119–122.
Tharapel, S. A. and Kadandale, J. S. (2002) Primed in situ labeling (PRINS) for evaluation of gene deletions in cancer. Am. J. Med. Genet. 107, 123–126.
Nilsson, M., Krejci, K., Koch, J., Kwiatkowski, M., Gustavsson, P., and Landegren, U. (1997) Padlock probes reveal single-nucleotide differences, parent of origin and in situ distribution of centromeric sequences in human chromosomes 13 and 21. Nat. Genet. 16, 252–255.
Larsson, C., Koch, J., Nygren, A., Janssen, G., Raap, A. K., Landegren, U., and Nilsson, M. (2004) In situ genotyping individual DNA molecules by target-primed rolling-circle amplification of padlock probes. Nat. Methods 1, 227–232.
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Pellestor, F. (2006). Development and Adaptation of the PRINS Technology. In: Pellestor, F. (eds) PRINS and In Situ PCR Protocols. Methods in Molecular Biology™, vol 334. Humana Press. https://doi.org/10.1385/1-59745-068-5:211
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DOI: https://doi.org/10.1385/1-59745-068-5:211
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