Skip to main content

Cloning of Immunoglobulin Chromosomal Translocations by Long-Distance Inverse Polymerase Chain Reaction

  • Protocol
Lymphoma

Part of the book series: Methods in Molecular Medicineā„¢ ((MIMM,volume 115))

Abstract

Many subtypes of B-cell malignancy are characterized by chromosomal translocations that target the immunoglobulin loci. Molecular cloning of such translocations continues to allow the identification of genes whose deregulated expression plays a pivotal role in the pathogenesis of B-cell malignancy. The clustering of breakpoints within the immunoglobulin loci has allowed the development of rapid and robust polymerase chain reaction methods for cloning. We discuss in this chapter the use of long-distance inverse polymerase chain reaction methods to clone immunoglobulin chromosomal translocation breakpoints from clinical material. These methods have been successfully applied to several other types of chromosomal translocation including those involving other genes such as BCL6, ETV6, and MYC.

This is a preview of subscription content, log in via an institution to check access.

Access this chapter

Protocol
USD 49.95
Price excludes VAT (USA)
  • Available as PDF
  • Read on any device
  • Instant download
  • Own it forever
eBook
USD 129.00
Price excludes VAT (USA)
  • Available as EPUB and PDF
  • Read on any device
  • Instant download
  • Own it forever
Softcover Book
USD 169.99
Price excludes VAT (USA)
  • Compact, lightweight edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info
Hardcover Book
USD 169.99
Price excludes VAT (USA)
  • Durable hardcover edition
  • Dispatched in 3 to 5 business days
  • Free shipping worldwide - see info

Tax calculation will be finalised at checkout

Purchases are for personal use only

Institutional subscriptions

Similar content being viewed by others

References

  1. Devilee, P., Cleton-Jansen, A., Cornelisse, C. J. (2001) Ever since Knudson. Trends Genet. 17, 569ā€“573.

    ArticleĀ  PubMedĀ  CASĀ  Google ScholarĀ 

  2. Balmain, A. (2001) Cancer genetics: from Boveri and Mendel to microarrays. Nat. Rev. Cancer 1, 77ā€“82.

    ArticleĀ  PubMedĀ  CASĀ  Google ScholarĀ 

  3. Davies, H., Bignell G.R., Cox C., Stephens, P., Edkins, S., Clegg, S., et al. (2002) Mutations of the BRAF gene in human cancer. Nature 417, 949ā€“954.

    ArticleĀ  PubMedĀ  CASĀ  Google ScholarĀ 

  4. Willis, T. G.. and Dyer, M. J. S. (2000) The role of immunoglobulin translocations in the pathogenesis of B-cell malignancies. Blood 96, 808ā€“822.

    PubMedĀ  CASĀ  Google ScholarĀ 

  5. Kuppers, R., and Dalla-Favera, R. (2001) Mechanisms of chromosomal translocations in B-cell lymphomas. Oncogene 20, 5580ā€“5594.

    ArticleĀ  PubMedĀ  CASĀ  Google ScholarĀ 

  6. Willis, T. G., Jadayel, D. M., Coignet, L. J., Abdul-Rauf, M., Treleaven, J. G., Catovsky, D., and Dyer, M. J. S. (1997) Rapid molecular cloning of rearrangements of the J locus using long-distance inverse polymerase chain reaction. Blood 90, 2456ā€“2464.

    PubMedĀ  CASĀ  Google ScholarĀ 

  7. Sonoki, T., Harder, L., Horsman, D. E., Karran, L., Taniguchi, I., Willis, T. G., et al. (2001) Cyclin D3 is a target gene of t(6;14)(p21.1;q32.3) of mature B-cell malignancies. Blood 98, 2837ā€“2844.

    ArticleĀ  PubMedĀ  CASĀ  Google ScholarĀ 

  8. Satterwhite, E., Sonoki, T., Willis, T. G., Harder, L., Nowak, R., Arriola, E. L., et ak. (2001) The BCL11 gene family: involvement of BCL11A in lymphoid malignancies. Blood 98, 3413ā€“3420.

    ArticleĀ  PubMedĀ  CASĀ  Google ScholarĀ 

  9. Wiemels, J. L., and Greaves, M. (1999) Structure and possible mechanisms of TEL-AML1 gene fusions in childhood acute lymphoblastic leukemia. Cancer Res. 59, 4075ā€“4082.

    PubMedĀ  CASĀ  Google ScholarĀ 

  10. Akasaka, H., Akasaka, T., Kurata, M., Ueda, C., Shimizu, A., Uchiyama, T., et al. (2000) Molecular anatomy of BCL6 translocations revealed by long-distance polymerase chain reaction-based assays. Cancer Res. 60, 2335ā€“2341.

    PubMedĀ  CASĀ  Google ScholarĀ 

  11. Dyer, M. J. S., and Oscier, D. G. (2002) The configuration of the immunoglobulin genes in B-cell chronic lymphocytic leukemia. Leukemia 16, 973ā€“984.

    ArticleĀ  PubMedĀ  CASĀ  Google ScholarĀ 

  12. Willis, T. G., Zalcberg, I. R., Coignet, L. J.A., Wlodarska, I., Stul, M., Jadayel, D. M., et al. (1998) Molecular cloning of translocation t(1;14)(q21;q32) defines a novel gene (BCL9) at chromosome 1q21. Blood 91, 1873ā€“1881.

    PubMedĀ  CASĀ  Google ScholarĀ 

  13. Willis, T. G., Jadayel, D. M., Du, M. Q., Peng, H., Perry, A. R., Abdul-Rauf, M., et al. (1999) Bcl10 is involved in t(1;14)(p22;q32) of MALT B-cell lymphoma and mutated in multiple tumor types. Cell 96, 35ā€“45.

    ArticleĀ  PubMedĀ  CASĀ  Google ScholarĀ 

  14. Kawamata, N., Sakajiri, S., Sugimoto, K. J., Isobe, Y., Kobayashi, H., and Oshimi, K. (2002) A novel chromosomal translocation t(1;14)(q25;q32) in pre-B acute lymphoblasticleukemia involves the LIM homeodomain protein gene, Lhx4. Oncogene 21, 4983ā€“4991.

    ArticleĀ  PubMedĀ  CASĀ  Google ScholarĀ 

Download references

Acknowledgments

The LDI-PCR technique was developed by Dr Tony Willis whilst a PhD student at the Institute of Cancer Research, Sutton UK. We gratefully acknowledge the generous financial support from the Bud Flanagan Leukaemia Fund, the Kay Kendall Leukaemia Fund, the Cancer Research Campaign and the Leukaemia Research Fund. Additional references and offprints of selected articles may be obtained on request to M.J.S.D.

Author information

Authors and Affiliations

Authors

Editor information

Editors and Affiliations

Rights and permissions

Reprints and permissions

Copyright information

Ā© 2005 Humana Press Inc.

About this protocol

Cite this protocol

Karran, E.L., Sonoki, T., Dyer, M.J.S. (2005). Cloning of Immunoglobulin Chromosomal Translocations by Long-Distance Inverse Polymerase Chain Reaction. In: Illidge, T., Johnson, P.W.M. (eds) Lymphoma. Methods in Molecular Medicineā„¢, vol 115. Humana Press. https://doi.org/10.1385/1-59259-936-2:217

Download citation

  • DOI: https://doi.org/10.1385/1-59259-936-2:217

  • Publisher Name: Humana Press

  • Print ISBN: 978-1-58829-159-2

  • Online ISBN: 978-1-59259-936-3

  • eBook Packages: Springer Protocols

Publish with us

Policies and ethics