http://orcid.org/0000-0003-2508-4979
Expression of Concern
After this article was published, similarities were noted between this article [1] and submissions by other research groups which call into question the validity and provenance of the reported results.
In response to queries about these concerns, the first author provided the underlying data in S1–S4 Files. They also noted that there are errors in:
- Fig 4D, where there is an additional data point (three articles were analyzed but there are four data points in Fig 4D). An updated Fig 4D with three data points is provided below.
- Table 1, where the HR value for ref. 22 UCA1 should be 0.567.
(A) Funnel plot of the publication bias for overall survival. (B) Funnel plot of the publication bias for recurrence-free survival. (C) Funnel plot of the publication bias for gender. (D) Funnel plot of the publication bias for histological classification; (E) Funnel plot of the publication bias for multifocality.
The authors commented on aspects of how data were collected and analyzed for this study. The PLOS ONE Editors concluded that the data and information provided in post-publication discussions lent some assurance as to the results reported in the article, but did not address the concerns about similarities with other published and submitted work.
The PLOS ONE Editors issue this Expression of Concern to notify readers of the unresolved concerns discussed above, and to provide the data and updated figure received from the authors.
The Director of Cell Biology at Dalian Medical University informed PLOS that the University investigated the primary research records and confirmed that this article represents the authors’ work.
The Competing Interests statements has been updated to: Author ZL is affiliated with Biomedical Business Department, Panasonic Appliances Cold Chain (Dalian) co., Ltd.
Supporting information
S1 File. The underlying data used for the analysis in this article [1].
https://doi.org/10.1371/journal.pone.0284938.s001
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S2 File. Individual-level quantitative data underlying Fig 4.
https://doi.org/10.1371/journal.pone.0284938.s002
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S3 File. Individual-level quantitative data underlying Fig 5.
https://doi.org/10.1371/journal.pone.0284938.s003
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S4 File. A list of excluded articles and reasons for exclusion from the analysis in this article [1].
https://doi.org/10.1371/journal.pone.0284938.s004
(XLSX)
24 Apr 2023: The PLOS ONE Editors (2023) Expression of Concern: The prognostic significance of long noncoding RNAs in bladder cancer: A meta-analysis. PLOS ONE 18(4): e0284938. https://doi.org/10.1371/journal.pone.0284938 View expression of concern
Figures
Abstract
Introduction
Bladder cancer (BC) is one of the most common urologic malignancies and it is urgently needed to identify novel potential prognostic biomarkers for predicting prognosis and progression of patients with BC in clinical practice. Previous research has revealed that long noncoding RNAs (lncRNAs) played critical roles in BC, and may serve as novel potential prognostic biomarkers in patients with BC. Therefore, we conducted this meta-analysis to clarify the prognostic potential of lncRNAs in BC patients.
Methods
A comprehensive search was performed in PubMed, Web of Science, and China National Knowledge Infrastructure (CNKI). According to the predefined exclusion and inclusion criteria, a total of 9 recently published articles comprising 13 lncRNAs and 666 BC patients were included into this meta-analysis. We analyzed the hazard ratios (HRs) and 95% confidence intervals (CIs) to determine the relationship between lncRNAs expression and survival outcomes. We also analyzed the odds ratio (ORs) and 95% confidence intervals (CIs) to assess the association between lncRNAs expression and clinicopathological characteristics, including histological grade, gender, multifocality, tumor size, and tumor stage.
Results
Our results revealed that high lncRNAs expression was associated with shorter overall survival in Asian BC patients (pooled HR = 2.32, 95% CI: 1.35–4.00, P = 0.002, random-effect). High lncRNAs expression levels were significantly associated with histological grade (G2-G3 vs. G1: OR = 3.857, 95%CI: 1.293–11.502, P = 0.015, random-effect).
Citation: Xia Y, Liu Z, Yu W, Zhou S, Shao L, Song W, et al. (2018) The prognostic significance of long noncoding RNAs in bladder cancer: A meta-analysis. PLoS ONE 13(6): e0198602. https://doi.org/10.1371/journal.pone.0198602
Editor: Igor B. Rogozin, National Center for Biotechnology Information, UNITED STATES
Received: January 10, 2018; Accepted: May 22, 2018; Published: June 5, 2018
Copyright: © 2018 Xia et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
Data Availability: All relevant data are within the paper and its Supporting Information files.
Funding: The author(s) received no specific funding for this work.
Competing interests: The authors have declared that no competing interests exist.
Introduction
Bladder cancer (BC) is one of the most common urologic malignancies, with nearly 430, 000 new cases diagnosed in 2012 worldwide [1]. Overall, 75% of the patients with BC are categorized as non-muscle-invasive bladder cancer (NMIBC) [2], which is associated with a high risk of recurrence and may progress to muscle invasive bladder cancer (MIBC) [3]. MIBC is associated with poor prognosis and the estimated 5-year survival rate remains at only 50% [4]. As a consequence, it’s crucial to identify novel potential prognostic biomarkers for predicting prognosis and progression of patients with BC in clinical practice.
Long non-coding RNAs (lncRNAs) are a class of non-protein-coding RNA molecules with more than 200 nucleotides [5]. It is reported that lncRNAs play critical roles in various cell biological processes, such as cellular differentiation, gene expression, protein localization, and DNA damage response [6]. An increasing number of studies have revealed that lncRNAs played tremendous roles in various human diseases, including cancer [7, 8]. More importantly, aberrant expression of multiple lncRNAs were found to be involved in the tumorigenesis and many of them were correlated with cancer prognosis [9–11]. Multiple lncRNAs have been reported to be promising prognostic indicators for cancers, such as hepatocellular carcinoma [12], non small cell lung cancer [13, 14], osteosarcoma [15], ovarian carcinoma [16], and renal cell carcinoma [17]. So far, many studies have shown that lncRNAs also played critical roles in BC [18], these findings support that lncRNAs can be developed as novel potential prognostic biomarkers in patients with BC.
However, owing to the limitations in sample size, single study may be inaccurate and insufficient. Thus, studies should be analyzed systematically to uncover the potential prognostic value of lncRNAs in patients with BC. Nevertheless, no meta-analysis has been carried out to provide a precise estimation. As a consequence, we conducted this meta-analysis to explore the prognostic value of lncRNAs and the association between lncRNAs and clinicopathological characteristics by combined analysis of data from the published articles.
Materials and methods
Search strategies
The contents of this review are in accordance with the standard guidelines of Preferred Reporting Items for Systematic Reviews and Meta-analysis (PRISMA) (S1 Checklist) [19]. We searched the databases PubMed, Web of Science, and China National Knowledge Infrastructure (CNKI) for relevant literatures about the prognostic value of lncRNA in BC. The search was performed by both text word and MeSH terms to increase the sensitivity. The following search terms were used: (“RNA, Long Noncoding”, “lncRNA”, “long noncoding RNA”, “Long intergenic non-coding RNA”) AND (“Urinary Bladder Neoplasms”, “Bladder Neoplasm”, “Bladder Tumor”, “Urinary Bladder Cancer”, “Bladder Cancer”) AND (“Prognosis”, “Prognostic”, “outcome”, “survival”, “recurrence”, “recurrence”). Additionally, manual searches were performed using the reference lists of the relevant articles to identify potentially eligible literatures. The retrieval time was from inception to May 2017.
Inclusion and exclusion criteria
The inclusion criteria were as follows: (1) studies evaluated the association between lncRNA(s) expression and prognosis of bladder cancer; (2) the survival outcomes were measured with overall survival (OS) or recurrence-free survival (RFS); (3) sufficient data were provided to estimate hazard ratios (HRs) and their 95% confidence interval (95% CI). The exclusion criteria were as follows: (1) insufficient data for HR and 95% CI estimation; (2) reviews, letters, or laboratory articles; (3) sample cases fewer than 30.
Data extraction
Data was carefully retrieved by two investigators (Yuexin Xia and Zhiyuan Liu) independently. The following information was extracted from each study: (1) publication information: the surname of first author and the year of publication; (2) patients’ characteristic information: study population, sample size, and follow-up duration; (3) lncRNA information: detection methods, survival results, and cut-off definition; (4) HRs and corresponding 95% CIs for survival analysis. The study quality was assessed in accordance with the Newcastle-Ottawa Scale (NOS) [20].
Statistical analysis
For the prognostic meta-analysis, HRs and corresponding 95% CIs were used to assess the relationship between lncRNAs expression and its prognostic value in BC. HRs and corresponding 95% CIs were extracted directly from data in included studies or calculated with available data by the method from Parmar. et al [21]. An observed HR>1 implied a poor prognosis. ORs and corresponding 95% CIs were used to evaluate the association between lncRNAs expression and clinical characteristics. A OR>1 implied that high levels of lncRNA was associated with parameter.
The statistical significance of the pooled HRs and ORs were determined using Z-test; a P value < 0.05 was considered statistically significant. Heterogeneity was evaluated by Q and I2 tests. If the heterogeneity was not significant (I2 < 50%, P value > 0.05), the fixed-effects model was used. Otherwise, a random-effects model was used (I2 ≥ 50%, P value ≤ 0.05).
Publication bias and sensitivity analysis were performed to test the effect of an individual study on pooled HR and OR. For publication bias assessing, Begg’s funnel plot and Egger’s regression test were employed. An asymmetric plot and the P value < 0.05 were considered a significant publication bias.
All of the statistical analyses were performed by using STATA12.0 software package (Stata Corporation).
Results
Study selection and characteristics
According to the predefined criteria, a total of 9 eligible studies were acquired from 3 databases, including PubMed, Web of Science, and CNKI [22–30]. Fig 1 shows the literature inclusion procedure. The details of the studies included in the meta-analysis are shown in Table 1.
Association between lncRNAs expression and OS
We conducted meta-analysis to investigate the prognostic value of lncRNAs in OS of 532 BC patients from the seven studies. Statistical analyses showed no significant association between the expression of lncRNAs and OS of BC patients (HR = 1.18, 95% CI: 0.86–1.63, P = 0.310, random-effects; Fig 2), while a significant heterogeneity existed between studies(I2 = 78.4%, P = 0.000).
Due to the presence of obvious heterogeneity, we performed subgroup analyses based on the ethnicity, follow-up period, and the expression level of lncRNAs in BC patients. Subgroup analysis by ethnicity indicated that high lncRNAs expression was associated with shorter overall survival in Asian BC patients (HR = 2.32, 95% CI: 1.35–4.00, P = 0.002, Fig 2) but not in Caucasians (HR = 0.88; 95% CI: 0.68–1.15, P = 0.358). And the heterogeneity decreased from 78.4% to 57.5% and 61.9%, respectively. When grouped according to the follow-up period, the association between high lncRNAs expression and poor OS was found only for studies of shorter follow-up period (≤60 months) (HR = 2.29, 95% CI: 1.50–3.51, P<0.001, Table 2). When grouped according to the expression level of lncRNAs in BC patients, there were no association between lncRNAs expression and OS (Table 2).
Association between lncRNAs expression and RFS
The prognostic value of lncRNAs in RFS was evaluated in two studies with 134 patients. lncRNAs expression were not significantly associated with RFS (HR = 1.54, 95%CI: 0.84–2.82, P = 0.162, random-effects; Fig 3), while a significant heterogeneity existed between studies (I2 = 64.6%, P = 0.037). Meta regression analysis, sensitivity analysis, and assessment of publication bias were not performed due to the limited number of included articles.
Correlation of lncRNAs with clinicopathological characteristics of BC
We conducted a meta-analysis to evaluate the association between lncRNAs expression and clinical characteristics in BC patients. High lncRNAs expression levels were significantly associated with histological grade (G2-G3 vs. G1: OR = 3.857, 95%CI: 1.293–11.502, P = 0.015, random-effect), while a significant heterogeneity existed between studies (I2 = 70.2%, P = 0.035) (Table 3). Unfortunately, no significant correlation was found with gender (male vs. female: OR = 1.291, 95%CI: 0.782–2.129, P = 0.318, fixed-effect), multifocality (multifocal vs. unifocal: OR = 1.109, 95%CI: 0.660–1.861, P = 0.696, fixed-effect), tumor size (>3cm vs. ≤3cm: OR = 0.964, 95%CI: 0.519–1.790, P = 0.907, fixed-effect), and tumor stage (Ta,T1 vs. T2-T4: OR = 0.502, 95%CI: 0.199–1.265, P = 0.144, random-effect).
Publication bias
Egger’s publication bias plot and Bgger’s funnel plot were performed to analyze the publication bias. Both the two tests indicated there were no publication bias, due to both the values of P>0.05. And the shape of funnel plots was approximately symmetrical (Fig 4).
(A) Funnel plot of the publication bias for overall survival. (B) Funnel plot of the publication bias for recurrence-free survival. (C) Funnel plot of the publication bias for gender. (D) Funnel plot of the publication bias for histological classifcation; (E) Funnel plot of the publication bias for multifocality.
Sensitivity analysis
Sensitivity analysis was performed to detect the influence of the individual study on the pooled results by removing one single study each time from the overall pooled analysis. The results verified that no individual study could change the pooled HRs significantly (Fig 5) and demonstrated that our analysis was relatively stable and credible.
Discussion
Up to now, numerous researches have showed that lncRNAs are involved in various cell biological processes, including cellular differentiation, gene expression, protein localization, and DNA damage response. An increasing number of evidence revealed that aberrant expression of multiple lncRNAs was related to clinical outcomes for cancer patients. In order to find some prognostic biomarkers for BC, we conducted this comprehensive systematic meta-analysis of the current studies. The present meta-analysis is the first to systematically analyze the association between the expression of lncRNAs and BC prognosis.
In the present meta-analysis, we examined the prognostic role of lncRNAs in BC and the association between lncRNAs and clinicopathological characteristics. A total of 9 recently published articles comprising 13 lncRNAs and 666 BC patients were included into this meta-analysis. The combined HRs suggested that high lncRNAs transcription levels represent an independent OS factor among Asian patients with BC and their high expressions were associated with shorter OS. However, no obvious association was found in Caucasians. Racial classification and regional factors might be crucial in the prognosis of patients with BC. This might be related to the variations in life styles, ethnic genetic heterogeneity, etc. When grouped according to the follow-up period, we found that the association was significant for studies with follow-up period ≤ 60 months, indicating that the lncRNAs expression might be more valuable on predicting short-term outcome of BC. In addition, we explored the relation between lncRNAs expression and clinicopathological characteristics. We found that high lncRNAs expression was only significantly associated with Histological grade (G2-G3 vs. G1: OR = 3.857, 95%CI: 1.293–11.502, P = 0.015, random-effect).
Several researches have showed that the increased expression of 6 lncRNAs (H19[31], UCA1[32], TUG1 [33], MALAT1 [34], SPRY4-IT1 [35], and HOTAIR [36]) was correlated to poor prognostic outcome of cancers, those findings in consist with our results. And it has been reported that the lncRNAs were aberrantly expressed in a variety of cancers (Table 4), leading to lack of specific BC-related lncRNA. Therefore, identification of BC related lncRNAs that are vital in tumorigenesis are promising biomarkers for BC prognosis.
In the present study, lncRNAs(UNMIBC, MEG3, SNHG16, and Malat1) expression were not significantly associated with RFS. Unexpectedly, previous studies have found that low level of MEG3 lncRNA expression correlates with poor survival in multiple cancers[37] and patients with low MEG3 level had shorter recurrence-free survival (RFS) in bladder cancer[24]. Our meta-analysis has a obvious heterogeneity existed between studies. It is likely that the heterogeneity affect the pooled results. The sources of heterogeneity were diverse, such as tumour stages, molecular subtypes, analysis method and so on. However, due to the limited number of included articles, meta regression analysis, sensitivity analysis, and assessment of publication bias were not performed. So the results need to be confirmed by future studies with larger samples.
It should be stressed that there are several limitations in our meta-analysis. Firstly, we only included the studies that measured survival outcomes with OS and RFS, and the articles reporting other prognostic indicators were thus excluded; secondly, the number of studies included in our meta-analysis was inadequate and the sample size was limited; thirdly, age is a very important predictor of OS and RFS in bladder cancer[38]. Because of the included studies provided insufficient data and grouped according to different criteria, age of the BC patients could not be considered when evaluating the association of lncRNA expression with overall survival or clinical characteristics. To reach a definitive conclusion, further well-designed meta-analysis and high-quality studies are needed to confirm the association between the expression of lncRNAs and BC prognosis.
Conclusion
In general, our meta-analysis for the first time evaluated the prognostic value of lncRNAs and the association between lncRNAs and clinical characteristics of patients with BC. Despite the existence of limitations, the present analysis showed that lncRNAs could be used as potential prognostic markers for BC and high lncRNAs expression could predict poor prognosis among Asian BC patients. We also found that lncRNAs could be developed as predictive biomarkers for Histological grade. However, in view of the limitation of individual studies about lncRNAs, good quality and large-scale investigations should be still warranted to further validate the clinical utilities of lncRNAs in evaluating BC patients’ prognosis.
Supporting information
S1 Checklist. PRISMA checklist.
Each section was localized in the paper.
https://doi.org/10.1371/journal.pone.0198602.s001
(DOC)
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