Skip to main content
Advertisement
Browse Subject Areas
?

Click through the PLOS taxonomy to find articles in your field.

For more information about PLOS Subject Areas, click here.

  • Loading metrics

Profiling and Identification of Novel Immunogenic Proteins of Staphylococcus hyicus ZC-4 by Immunoproteomic Assay

  • Lei Wang ,

    Contributed equally to this work with: Lei Wang, Zhi-wei Wu, Yan Li

    Affiliation College of Animal Science & National Engineering Center for Swine Breeding Industry, South China Agriculture University, Guangzhou, China

  • Zhi-wei Wu ,

    Contributed equally to this work with: Lei Wang, Zhi-wei Wu, Yan Li

    Affiliation College of Animal Science & National Engineering Center for Swine Breeding Industry, South China Agriculture University, Guangzhou, China

  • Yan Li ,

    Contributed equally to this work with: Lei Wang, Zhi-wei Wu, Yan Li

    Affiliation Institute of Animal Health, Guangdong Academy of Agriculture Sciences, Guangzhou, China

  • Jian-guo Dong,

    Affiliations College of Animal Science & National Engineering Center for Swine Breeding Industry, South China Agriculture University, Guangzhou, China, Xinyang Animal Disease Prevention and Control Engineering Research Center, Xinyang College of Agriculture and Forestry, Xinyang, China

  • Le-yi Zhang,

    Affiliation College of Animal Science & National Engineering Center for Swine Breeding Industry, South China Agriculture University, Guangzhou, China

  • Peng-shuai Liang,

    Affiliation College of Animal Science & National Engineering Center for Swine Breeding Industry, South China Agriculture University, Guangzhou, China

  • Yan-ling Liu,

    Affiliation College of Animal Science & National Engineering Center for Swine Breeding Industry, South China Agriculture University, Guangzhou, China

  • Ya-hua Zhao ,

    cxsong2004@163.com, cxsong@scau.edu.cn (CXS); Yahuazhao@yeah.net (YHZ)

    Affiliation College of Animal Science & National Engineering Center for Swine Breeding Industry, South China Agriculture University, Guangzhou, China

  • Chang-xu Song

    cxsong2004@163.com, cxsong@scau.edu.cn (CXS); Yahuazhao@yeah.net (YHZ)

    Affiliations College of Animal Science & National Engineering Center for Swine Breeding Industry, South China Agriculture University, Guangzhou, China, Institute of Animal Health, Guangdong Academy of Agriculture Sciences, Guangzhou, China

Abstract

Staphylococcus hyicus has caused great losses in the swine industry by inducing piglet exudative epidermitis (EE), sow mastitis, metritis, and other diseases and is a threat to human health. The pathogenesis of EE, sow mastitis, and metritis involves the interaction between the host and virulent protein factors of S. hyicus, however, the proteins that interact with the host, especially the host immune system, are unclear. In the present study, immunoproteomics was used to screen the immunogenic proteins of S. hyicus strain ZC-4. The cellular and secreted proteins of S. hyicus strain ZC-4 were obtained, separated by 2D gel electrophoresis, and further analyzed by western blot with S. hyicus strain ZC-4-infected swine serum. Finally, 28 specific immunogenic proteins including 15 cellular proteins and 13 secreted proteins, 26 of which were novel immunogenic proteins from S. hyicus, were identified by matrix-assisted laser desorption ionization time-of-flight mass spectrometry. To further verify their immunogenicity, two representative proteins (acetate kinase [cellular] and enolase [secreted]) were chosen for expression, and the resultant recombinant proteins could react with S. hyicus ZC-4-infected swine serum. In mice, both acetate kinase and enolase activated the immune response by increasing G-CSF and MCP-5 expression, and acetate kinase further activated the immune response by increasing IL-12 expression. Enolase can confer better protection against S.hycius than acetate kinase in mice. For the first time to our knowledge, our results provide detailed descriptions of the cellular and secreted proteins of S. hyicus strain ZC-4. These immunogenic proteins may contribute to investigation and elucidation of the pathogenesis of S. hyicus and provide new candidates for subunit vaccines in the future.

Introduction

S. hyicus is the major pathogen causing piglet exudative epidermitis (EE), sow mastitis, and metritis, among other diseases [1,2]. EE generally occurs as an acute infection in suckling and newly weaned piglets [3] and is characterized by greasy exudation, exfoliation, and vesicle formation [4]. We previously observed that EE led to 70%–100% mortality in non-immune farms (data not shown).

The pathogenicity of virulent bacteria is caused by the expression of numerous virulence factors [5]. Previous studies indicated that exfoliative toxin is the most important virulence factor of S. hyicus [6,7], as it can induce exfoliation or blister formation in diseased skin lesions by selectively digesting porcine desmoglein 1 directly in the porcine epidermis [8]. Staphylococcal protein A is another important virulence factor in S. hyicus [9]; in S. aureus, protein A binds the Fc region of immunoglobulin G [10,11] thereby inhibiting phagocytes and damaging platelets [12]. However, the pathogenic molecular mechanism of S. hyicus has not been fully clarified.

Bacterial cellular proteins [13,14] and secreted proteins [15] are necessary for cell adhesion, invasion, and pathogenicity. These proteins are all synthesized intracellularly and thereafter transported across the bacterial membrane to the bacterial cell wall or the host tissues, leading to colonization, invasion, spread, and immune responses.

Given the important role of cellular proteins and secreted proteins in bacterial pathogenicity, we employed two-dimensional gel electrophoresis (2-DE) coupled with matrix-assisted laser desorption ionization time-of-flight mass spectrometry (MALDI-TOF/TOF MS) and bioinformatics analysis to explore and identify new proteins involved in adhesion, infection, and pathogenicity of S. hyicus. Furthermore, we examined the immunogenicity of two representative proteins in vivo for a deeper understanding of the mechanism of S. hyicus infection.

Materials and Methods

Bacterial strains, culture conditions, plasmid, and animals

The highly pathogenic S. hyicus strain ZC-4 used in this study was isolated from a diseased piglet with acute EE in Guangdong province of China by our laboratory and stored at -80°C. Two types of media were used to culture ZC-4 cells at 37°C for 12h: the first was normal nutrient broth (10 g peptone, 3 g beef extract, 5 g NaCl, pH 7.4), and the second was a peptide-free medium (2.46 g MgSO4·7H2O, 17 g Na3PO4, 3 g KH2PO4, 0.5 g NaCl, 1 g NH4Cl, 4 g glucose) designed to avoid any interference by foreign proteins. Escherichia coli strains DH5α and BL21 and plasmid pET32a were used for cloning and prokaryotic expression. SPF mice (female and four week-old) in our study were purchased from the Experimental Animal Center of Southern Medical University, GZ, China. Twenty-five-day-old piglets were obtained from a commercial source herd negative for main pathogen (PRRSV, PRV, Streptococcus). After experiment finished, euthanasia was used for pigs and mice following the requirements of the animal experimental ethics.

Preparation of swine immune serum against ZC-4

The cultured S. hyicus strain ZC-4 was centrifuged at 10,000× g for 3 min, washed three times, and resuspended in PBS. Twenty-five-day-old piglets were challenged with S. hyicus strain ZC-4 suspension (1011 CFU/mL, 3 mL/piglet) via intramuscular injection, and swine sera were collected at 15 days post-challenge and stored at -80°C for western blotting, after experiment finished, euthanasia was used for pigs.

Animal experiments were conducted in keeping with the recommendations in the Guide for the Care and Use of Laboratory Animals of the Ministry of Science and Technology of the People’s Republic of China. The present animal study was approved by the Animal Experimental Ethics Committee of the Institute of Animal Health, Guangdong Academy of Agricultural Sciences (Approval number 2012–003).

2-DE and western blot analysis

Precipitation of cellular proteins for 2-DE.

Precipitation of cellular proteins from S. hyicus was performed with some modifications as described previously [16]. Briefly, S. hyicus ZC-4 was cultured to exponential-phase, centrifuged at 11,700× g for 20 min at 4°C, washed twice in pre-cooled PBS, and resuspended in 5 mL protein extraction buffer (40 mM Tris, 6 M urea, 2 M thiourea, 2% CHAPS (3-[(3-cholamidopropyl) dimethylammonio]-1-propanesulfonate), 50 mM DTT, 1% immobilized pH gradient [IPG] buffer, pH 3–10) with protease inhibitor mixture (2 mM EDTA, 1 mM PMSF). The suspension was incubated on ice and sonicated for 60 cycles (250 W, 2 s on, 3 s off). Cellular debris was removed by centrifugation at 15,000× g for 30 min at 4°C. The supernatants were cleaned using a 2-D Clean Up kit (GE Healthcare, Piscataway, NJ, USA). The concentration was determined with a 2-D Quant kit (GE Healthcare) according to the manufacturer’s instructions, and the clear supernatants were stored at -80°C for use.

Precipitation of secreted proteins for 2-DE.

Secreted bacterial proteins were precipitated using a modified ammonium sulfate (APS) method [17]. The bacteria were cultured in nutrient broth or peptide-free medium. At exponential growth, cultures were centrifuged for 20 min at 11,700× g and 4°C. The supernatants were filtered through a 0.22-μm pore-size membrane filter to remove residual bacteria, APS was added to a concentration of 70% m/v, and the mixtures were incubated at 4°C overnight. After precipitation, the mixtures were centrifuged, and the pellets were resuspended in 0.01 mM PBS, dialyzed for 48 h at 4°C, and finally freeze dried. A simple cleanup and concentration step was done using the 2-D Clean Up kit and 2-D Quant kit (GE Healthcare).

2-DE separation of cellular and secreted proteins.

To achieve better separation, pH 3–10 IPG strips (11 cm; GE Healthcare) were used for isoelectric focusing analysis. The precipitated proteins were first treated with the 2-DE Clean-up kit and then rehydrated overnight at room temperature with rehydration solution (7 M urea, 2 M thiourea, 4% CHAPS, 50 mM DTT, 0.2% IPG buffer [pH 3–10], and 0.002% bromophenol blue). Each strip was loaded with 450 μg proteins, and 2-DE analysis was performed as described previously with modifications [18]. The samples were used to rehydrate an 11-cm IPG strip for 12 h at 20°C. The following IEF (isoelectric focusing electrophoresis)protocol was applied: 1 h at 300 V; 1 h at 600 V; 1 h at 1000 V; 1 h at 8000 V; hold at 8000 V (65,000 Vh total). After focusing was completed, IPG strips were equilibrated with 1% (w/v) DTT in equilibration base buffer containing 50 mM Tris-HCl (pH 8.8), 6 M urea, 30% glycerol, and 2% SDS for 15 min and thereafter equilibrated with 2.5% (w/v) iodeacetamide in the same buffer for 15 min. Equilibrated IPG strips were placed onto 12.5% SDS polyacrylamide gels for the second dimensional separation [16]. Two replicate 2-DE gels were used for each sample: one for Coomassie blue stain and the other for western blot analysis. Image analysis was performed with PDQuest 2-D Advance.

2-DE immunoblot assays.

Immunoblotting was conducted as described previously [19]. Proteins from one of the replicate 2D gels were transferred to nitrocellulose membranes (Pall, NY, USA) using transfer buffer (25 mM Tris, 192 mM glycine, 20% methanol, pH 8.3) at 250 mA for 3 h. Thereafter, the nitrocellulose membranes were washed with TBST (50 mM Tris, 150 mM NaCl, 0.05% Tween 20, pH 7.6) and blocked with 5% (w/v) bovine serum albumin (BSA) in TBST for 1 h at room temperature. Membranes were washed five times with TBST for 10 min, incubated overnight at 4°C with the anti-S. hyicus serum (1:100) in TBST containing 1% (w/v) BSA, washed another five times, and incubated with rabbit anti-swine IgG/HRP (1:8000; Invitrogen, Carlsbad, CA, USA) in TBST containing 1% (w/v) BSA for 1 h at RT. Finally the membranes were developed using an Enhanced Chemiluminescence (ECL) kit (Tiandz, Beijing, China), and images were captured by a GS800 Scanning Densitometer (Bio-Rad, CA, USA).

MALDI-TOF/TOF MS and bioinformatics analysis.

2-DE gels and their immunoblot profiles were compared by PDQuest 2-D Advance (Bio-Rad). The immunoreactive spots were excised, and in-gel protein digestion was performed as described previously [18]. Tryptic peptides were solubilized in 0.5% trifluoroacetic acid and subjected to MALDI-TOF/TOF MS with a Bruker UltraReflexTM III MALDI-TOF/TOF mass spectrometer (Bruker Daltonics, Karlsruhe, Germany). Peptide mass fingerprints were analyzed and searched against the theoretical spectra of S. hyicus. Peptide mass fingerprinting (PMF) data were analyzed using MASCOT (Matrix Science, London, UK). MASCOT searches were used to determine the possibility of each peptide and used for the combined peptide scores. The extent of sequence coverage, number of matched peptides, and the score probability obtained from the PMF data were all used to identify proteins. Low-scoring proteins were either verified manually or rejected [20].

Plasmid construction, protein expression and purification.

Two proteins, acetate kinase (ACK) and enolase (ENO), representing two categories of identified immunogenic proteins were chosen for prokaryotic expression. The gene fragments encoding ACK and ENO were amplified by PCR with designed primers, digested with restriction enzymes, and ligated into vector pET32a to obtain the resultant plasmids pET32a-ACK and pET32a-ENO. The constructed plasmids were transformed into E. coli strain BL21 cells, the cells were cultured at 37°C, and protein expression was induced by adding 1 mM IPTG when the OD600 value was 0.6–1.0. Six hours after induction, the cells were harvested, and the recombinant proteins were subjected to western Blot analysis as described above. ACK and ENO were purified with a commercial purification kit (CW Biotech, Beijing, China) according to instructions of the manufacturer, while, HIS was purified by gel electrophoresis (data not show).

Mouse experiments.

To validate the immunogenicity of identified proteins, The BALB/c mice were injected at multiple sites intramuscularly and subcutaneously with the 200 μg purified proteins, blood samples were collected at 3 h and 24 h post injection [21,22], and cytokine concentrations were determined using the Ray Biotech mouse cytokine antibody array G2 (AAM-CYT-G2-4, Ray Biotech, Norcross, GA, USA).

Animal experiments were conducted in keeping with the recommendations in the Guide for the Care and Use of Laboratory Animals of the Ministry of Science and Technology of the People’s Republic of China. The present animal study was approved by the Animal Experimental Ethics Committee of the Institute of Animal Health, Guangdong Academy of Agricultural Sciences (Approval number 2014–010).

Epitope analysis of identified proteins.

B-cell epitopes play a vital role in the development of peptide vaccines and in diagnosis of diseases. To map linear B-cell epitopes of the ZC-4 immunoreactive proteins screened by immunoproteomic assay [23], we used ABCPred (http://www.imtech.res.in/raghava/abcpred/) and BCPreds (http://ailab.cs.iastate.edu/bcpreds/). We employed PSORTb v.3.0.0 (http://www.psort.org/) and GposmPLoc (http://www.csbio.sjtu.edu.cn/bioinf/Gpos-multi/) to predict the subcellular localization of the proteins [24,25].

Immune protection test.

Experiments were performed on female BALB/c mice, 26 mice were randomly divided into four groups, A: ENO (n = 5); B: ACK (n = 5); C: HIS (n = 5); D: PBS (n = 6); E: Control (n = 5). Mice were injected with 80ug of purified in complete Freund’s adjuvant, and then boosted twice, at 7 days intervals with 80ug in Freund’s incomplete adjuvant. At 7 days after the final booter injection, the blood were collected from tail vein, and then the mice were challenged with 300uL 2.8×109 CFU/mL S.hycius via intramuscular and subcutaneous injection. Their percent of survival were monitored at 0, 6, 12, 20, 48, 60, and 72 h after challenge, the blood from dying mice infected by ZC-4 were collected, and incubated on blood agar plate for 20 h (HKM, GZ, China) to recovery S.hycius.

Animal experiments were conducted in keeping with the recommendations in the Guide for the Care and Use of Laboratory Animals of the Ministry of Science and Technology of the People’s Republic of China. The present animal study was approved by the Animal Experimental Ethics Committee of the South China Agricultural University (Approval number 2016–013).

ELISA analysis.

ELISA was performed to test the antibody level, 0.25 ug purified proteins including ACK, ENO and HIS, were coated in 96 well plates (JET, GZ, China). The plates were incubates for overnight at 4°C, washed by PBST five times, and then blocked by 5% milk at 37°C for 2 h, washed by PBST five times again. After that, 100 uL of 1:10 diluted mouse anti-ACK serum, mouse anti-ENO serum or mouse anti-His serum were added to 96-well plates and incubated at 37°C for 30 min, washed by PBST five times, added 100 uL HRP-conjugated goat anti-swine IgG(H+L) as the secondary antibody, incubated at 37°C for 30 min, washed by PBST five times, added 100uL TMB (Solarbio, Beijing, China), incubated at 25°C for 10 min, added 50 uL 2M H2SO4 to stop the reaction, the absorbance was measured at 450 nm in a microplate ELISA reader (Bio-Tek, Vermont, USA).

Statistical analysis

The significance of different groups was analyzed statistically with the Student’s t-test. The data were expressed as the mean ± standard deviation (SD), p values < 0.05 were considered to be significant.

Results

Identification of immunogenic proteins of S. hyicus ZC-4

To identify immunogenic proteins, samples of cellular and secreted proteins were subjected to immunoproteomics analysis, and the proteins that reacted with swine immune sera against S. hyicus ZC-4 were selected as the immunogenic proteins. We identified 24 spots from the bacterial cellular protein samples and 21 and 12 spots from bacterial secreted protein samples with normal broth and peptide-free medium, respectively, by 2-DE immunoblotting. Further analysis with MALDI-TOF/TOF MS, identified 15 cellular immunogenic proteins, seven secreted immunogenic proteins from normal broth, and nine secreted immunogenic proteins from peptide-free medium. S. hyicus lipase and phosphopyruvate hydratase (enolase) were identified from both media (Fig 1). Thus, 28 different immunogenic proteins were isolated from the S. hyicus cellular and secreted fractions; lipase and metalloprotease were identified previously [26,27], and the remaining 26 proteins were novel in this study (Tables 1 and 2).

thumbnail
Fig 1. Identification of immunogenic proteins of S. hyicus ZC-4 by one or two-dimensional gel electrophoresis and western blot.

Left panels: Proteins were analyzed by one-dimensional gel electrophoresis, (M) Protein marker, 20 kDa–170 kDa. (1) Proteins were analyzed by one-dimensional gel electrophoresis. Middle and Right panels: Proteins were analyzed by two-dimensional gel electrophoresis and immunoblot, all samples at 450 μg per gel were loaded onto pH 3–10 strips for electrophoresis. Middle panels: images of 2-DE gel stained with Coomassie blue (a); right panels: 2-DE gel immunostained using pig sera against ZC-4 (b). The upper to lower panels are 2-DE maps for cellular proteins (A) and secreted proteins cultured with nutrient broth (B) or with peptide-free medium (C).

https://doi.org/10.1371/journal.pone.0167686.g001

thumbnail
Table 1. Cellular immunogenic proteins of S. hyicus ZC-4 identified by immunoproteomic assay.

https://doi.org/10.1371/journal.pone.0167686.t001

thumbnail
Table 2. Secreted immunogenic proteins of S. hyicus ZC-4 identified by immunoproteomic assay.

https://doi.org/10.1371/journal.pone.0167686.t002

Functional analyses of identified immunogenic proteins

The functions of the identified immunogenic proteins of S. hyicus are summarized in Fig 2. The data demonstrated that most of the proteins were involved in amino acid transport and metabolism or energy production and conversion, and some were involved in translation, post-translational modification, protein turnover, and as chaperones.

thumbnail
Fig 2. Graphical representations of immunogenic proteins categorized according to cellular function.

(A) Cellular proteins. (B) Secreted proteins.

https://doi.org/10.1371/journal.pone.0167686.g002

Immunogenicity validation of identified proteins

To verify the immunogenicity of identified proteins obtained by immunoproteomic assay, ACK from cellular proteins and ENO from secreted proteins were chosen for biological function validation. The ACK and ENO proteins were expressed in E. coli and analyzed by SDS-PAGE, which confirmed that the proteins were correctly expressed with high abundance (Fig 3A). Western blot analysis of recombinant ACK and ENO demonstrated that both proteins could react with pig sera against ZC-4 (Fig 3A), suggesting that the two proteins exhibit immunogenicity. The recombinant proteins were purified on a Ni2+ Sepharose column for further use (Fig 3B).

thumbnail
Fig 3. Prokaryotic expression and immunogenicity analysis of acetate kinase (ACK) and enolase (ENO).

(A) Heterologous expression and western blot analysis of ACK and ENO. Lanes: M, prestained protein molecular weight marker, 10 kDa–170 kDa; 1, recombinant ACK induced by 1 mM IPTG; 2, recombinant ENO induced by 1 mM IPTG; 3, western blot analysis of recombinant ACK using ZC-4 antiserum; 4, western blot analysis of purified recombinant ENO. (B) Purification of recombinant proteins. Lanes: M, prestained protein molecular weight marker, 25 kDa–120 kDa; 1, purified recombinant ENO; 2, purified recombinant ACK.

https://doi.org/10.1371/journal.pone.0167686.g003

Function validation of ACK and ENO in mice

To determine the biological function of ACK and ENO, BALB/c mice were treated with purified ACK and ENO, and the levels of 32 serum cytokines including interleukin (IL)-6, IL-8, IL-12, and INF-γ were determined by protein chip at 3 h and 24 h. The levels of both G-CSF and MCP-5 increased significantly (p < 0.001) at 3 h and 24 h in ACK and ENO treated groups, and that the level of IL-12p40p70 increased significantly (p < 0.001) at 3 h and 24 h in the ACK-treated group (Fig 4).

thumbnail
Fig 4. Plasma cytokine levels of BALB/c mice treated with acetate kinase (ACK) and enolase (ENO).

Cytokine levels in blood samples from mice treated with recombinant ENO (A, B) or ACK (C, D). BALB/c mice were injected with the purified proteins, and blood samples were collected at 3 h and 24 h post injection for determination of cytokine levels. The significance of values were tested by GraphPad Software, “****” indicating p<0.001, “*” indicating p<0.05.

https://doi.org/10.1371/journal.pone.0167686.g004

Epitope prediction of identified proteins

B-cell epitopes play a vital role in the antibacterial immune response and are widely used to develop peptide vaccines and diagnose diseases. We analyzed the B-cell epitopes of identified proteins, including ACK and ENO, using ABCPred and BCPreds. We identified 100 B-cell epitope antigen sequences for the cellular immunogenic proteins and 136 B-cell epitope antigen sequences for the secretory immunogenic proteins (Tables 1 and 2).

Immunoprotection of ENO and ACK as a subunit vaccine against S. hycius in mice.

Blood was collected from the tail vein of immune and control mice at 0, 7, 14, 21 and 28 days after the first immunization, and antibodies in the serum were assessed by ELISA. We wanted to screen the antibody level at 0, 7, 14, 21 and 28 days, to observe the curves of antibody, but unfortunately, the blood were too little to measure the level of antibody at these time, by ELISA(data not show), we only got the value at 28 days after first immunization (Fig 5A). The results showed that the level of antibody of treated groups were higher than that of PBS, while there was no significance between HIS treated group and PBS group, this might be because of the blood were too little, and were diluted much.

thumbnail
Fig 5. Protective immunity of ACK and ENO in mice.

(A) The levels of antibody of ACK, ENO and HIS at 28 days after first immunization, measured by ELISA, the serum of PBS group was as negative control. The differences were significant between the ACK and ENO treated groups and control group, p<0.05 (“*”). (B) The survival percentage of ACK and ENO immuned mice. ACK, ENO, HIS and control groups had 5 mice, respectively, PBS group had 6 mice, the control group did not challenge with S.hycius. At 0, 6, 20, 48. 60. 72 post challenge hours, we observed the life-or-death situation.

https://doi.org/10.1371/journal.pone.0167686.g005

In order to evaluate the efficacy of the ENO and ACK proteins vaccine against S.hycius ZC-4 infection, the ACK and ENO immuned mice were challenged with 300uL 2.8×109 CFU/mL S.hycius. The PBS and His groups mice began to die at 12 h after the challenge, after 24h, the two groups had 83.3%(5/6) and 80%(4/5) mortality. Whereas the mice in the ACK and ENO immunized groups began to die after 12 or 24 hours after the challenge, and after 24 or 36h, they had 60% (3/5) and 40% (2/5) mortality (Fig 5B), these results confirmed that the ACK and ENO immuned mice protected mice against infection by S. hycius ZC-4(Fig 5B).

Discussion

S. hyicus is the causative agent of EE, which mainly occurs in piglets [28] with long-term clinical indicators. In particularly, because of the high temperatures and humidity in south China, there are frequent disease outbreaks that seriously damage pig farms. However, the mechanism of S. hyicus infection remains incompletely elucidated, and there is no effective vaccine for EE. Therefore, identification of the immunogenic proteins of S. hyicus and clarification of their effects on the immune response are needed for exploring the pathogenicity of pathogenic bacteria and the host antibacterial response.

Although there is no database with sufficient information about proteins in S. hyicus, we identified 28 specific immunogenic proteins from S. hyicus strain ZC-4, including 15 structure proteins and 13 secreted proteins. Of the 28 proteins, some were previously reported in other bacteria, several were subunits of multissubunitproteins, and others such as ABC transporter ATP binding protein, ENO, and ACK were novel immunogenic proteins for S. hyicus.

Among the identified bacterial cellular proteins, phosphoenolpyruvate carboxykinase, 23S rRNA (uracil-5)-methyltransferase (RumA), ornithine carbamoyl transferase, lysyl-tRNA synthetase, and ACK are appealing candidates for further study. Phosphoenolpyruvate carboxykinase can effectively induce the cell-mediated immune response by increasing CD4 T cells and cytokines such as IFN-γ, IL-12, and TNF-α, thus displaying high immunogenicity[29], and might be a promising new subunit vaccine candidate. RumA has contributed to the spread of bacterial drug resistance by interfering with initiation factor IF2 and blocking antibiotic drug binding to rRNA through the site-specific methylation of 23 rRNA by RumA [30]. Ornithine carbamoyl transferase was first discovered by Winierhoff [31] and catalyzes the carbamoylation of ornithine to form citrulline in the urea cycle. Deficiency of ornithine carbamoyl transferase leads to an X-linked aminoacidopathy characterized by hyperammonemia, neurologic abnormalities, and orotic aciduria [32]. Hughes et al. demonstrated that the major outer surface phosphoenolpyruvate carboxykinase of Streptococcus agalactiae could trigger the host immune response[33], our data showed that phosphoenolpyruvate carboxykinase from S. hyicus had a similar immune regulation function in pigs.

Another important protein identified in the current study was ACK. S. hyicus predominantly accumulates acetate in the culture medium, suggesting that the phosphor-transacetylase (Pta)-ACK pathway plays a crucial role in bacterial fitness. The Pta-ACK pathway in S. aureus plays an indispensable role for maintaining energetic and metabolic homeostasis during overflow metabolism [34]. Our results indicated that the recombinant ACK exhibited good immunogenicity and could react with S. hyicus antiserum. The in vivo mouse experiments also indicated that ACK can stimulate G-CSF, MCP-5, and IL-12 expression. IL-12 comprises covalently linked p40 and p35 subunits [35] and is an important regulator of T-helper 1 (Th1) cell responses[36]. G-CSF displays a function of enhance survival and antiapoptotic activity [37]. Mindy et al suggested that the expression of MCP-5 is involved in inflammation and the host response to pathogens [38], these proteins were upregulated in our results suggested that the S. hyicus ACK might be related to disease development. The immuneprotection test suggested that ACK can confer the week protection against S.hycius ZC-4 strain

The pathogeneses of bacteria are remarkably diverse; nevertheless, all mechanisms of bacterial incursion might be classified in three principal strategies: microbial adhesion, secretion of toxins into the extracellular milieu, and injection of virulence factors into host cells [15]. Thus, the identification of secreted proteins was of crucial importance to understanding the pathogenesis of S. hyicus.

In the present study, we identified several important secreted proteins with implications for future research. Among these, ENO has been identified several times [18,21]in other bacteria including Staphylococcus species, but this was the first report in S. hyicus to our knowledge. ENO has several auxiliary functions, e.g., as a cell-surface plasminogen receptor, as a secreted protein for a variety of pathogenic microorganisms, and as a factor in bacteria adhesion [39]. Our results showed that S. hyicus ENO can increase the cytokine levels of G-CSF and MCP-5 in mice; however, whether it is an important factor that induces IL-10 expression, as demonstrated for Streptococcus sobrinus ENO [21], whether or how enolase involved in S.hycius infection, all requires further study. In our study, we found that similar to enolase of Streptococcus iniae and Plasmodium spp (just enolase specific peptide sequence) [40, 41], enolase of S.hycius would confer effective protection in mice against S.hycius infection. We analyzed the homology of enolase between S.hycius and S. iniae and found that their similarity was up to 84% and higher than that betwwen S.hycius and S. sobrinus (76%). These results suggested the enolase had multifunction in different species, and in S.hycius, would be a good protective antigen. S. hyicus also secreted lipase, which was reported in many bacterial species as a potential contributor to colonization and persistence on the skin and is produced during bacterial infection [4244]; Thus, lipase has been suggested as an important bacterial virulence factor and might play important role in the pathogenesis of S. hyicus. Bacterial ABC transporters are essential in cell viability, virulence, and pathogenicity. In addition to their function in transport, some bacterial ABC proteins are involved in regulation of several physiological processes. Basavanna et al. and Mei et al. provided more evidence that functioning ABC transporters were required for the full virulence of bacterial pathogens Streptococcus pneumoniae and S. aureus [45,46]. To the best of our knowledge, our study was the first to identify ABC transporters as secreted proteins of S. hyicus, and their function will be explored in subsequent studies. Serine/threonine protein phosphatase is involved in the DNA damage response by regulating dephosphorylation and mediating cell apoptosis[47,48]. Whether, this protease plays a role similar to that of ENO in S. hyicus invasion of host cells remains to be studied.

In addition to those discussed above, seven structural proteins and five secreted proteins reacted with antisera. So far, studies about these proteins are very limited, and the biological functions of these proteins in immune-regulation during S. hyicus infection remain unclear and require further investigation. Additional studies are necessary to elucidate the biological functions of these unknown proteins.

Interestingly, S. hyicus lipase and phosphopyruvate hydratase (ENO) were identified in both normal broth and peptide-free medium, whereas the other proteins were only secreted in one condition, indicating lipase and ENO might be essential for bacteria growth in either condition, next step, we hoped to express lipase to explore its function.

Conclusions

In summary, we identified 28 proteins, including 15 structural and 13 secreted proteins, as specific immunogenic proteins of S. hyicus ZC-4 by immunoproteomic analysis. Two of these were identified previously, and the remaining 26 were novel for S. hyicus. Furthermore, two of these proteins, ACK and ENO from the cellular and secreted fractions, respectively, were chosen for verification by western blotting and in mouse models, which indicated that ACK and ENO had some level of immune protection against S.hycius in mice. Moreover, we analyzed the important B-cell epitopes and subcellular localizations of these proteins. This study contributes to the current understanding of the map of cellular and secreted proteins of the virulent S. hyicus ZC-4 strain and provides important information about S. hyicus proteins that can help reveal the molecular mechanisms of S. hyicus pathogenicity and develop efficient subunit vaccines.

Acknowledgments

The authors would like to sincerely thank Baiyuan Cui from the Mass Spectrometry unit of the Innovation Center of GDAAS for the mass spectrometeric analysis.

Author Contributions

  1. Conceptualization: CXS.
  2. Data curation: LW ZWW YL.
  3. Formal analysis: LW ZWW.
  4. Funding acquisition: CXS.
  5. Investigation: CXS LW ZWW.
  6. Methodology: YL LW ZWW.
  7. Project administration: CXS YHZ.
  8. Resources: LW ZWW YLL PSL LYZ.
  9. Software: LW ZWW YL.
  10. Supervision: CXS.
  11. Validation: LW ZWW YL.
  12. Visualization: LW CXS.
  13. Writing – original draft: LW.
  14. Writing – review & editing: CXS LW JGD.

References

  1. 1. Sato H, Tanabe T, Nakanowatari M, Oyama J, Yamazaki N, Yoshikawa H, et al. Isolation of Staphylococcus hyicus subsp. hyicus from pigs affected with exudative epidermitis and experimental infection of piglets with isolates. Kitasato Arch Exp Med. 1990;63(2–3):119–130. pmid:2096257
  2. 2. Schulz W. [Etiology of exudative epidermitis in young pigs with special reference to Staphylococcus hyicus]. Arch Exp Veterinarmed. 1969;23(2):415–418. pmid:5393802
  3. 3. Wegener HC, Schwarz S. Antibiotic-resistance and plasmids in Staphylococcus hyicus isolated from pigs with exudative epidermitis and from healthy pigs. Vet Microbiol. 1993;34(4):363–372. pmid:8506609
  4. 4. Jones LD. Observation of exudative epidermitis. Vet Med. 1961;14:1028–1033.
  5. 5. Alverdy J, Holbrook C, Rocha F, Seiden L, Wu RL, Musch M, et al. Gut-derived sepsis occurs when the right pathogen with the right virulence genes meets the right host: evidence for in vivo virulence expression in Pseudomonas aeruginosa. Annals Surg. 2000; 232(4):480–489.
  6. 6. Andresen LO, Bille-Hansen V, Wegener HC. Staphylococcus hyicus exfoliative toxin: purification and demonstration of antigenic diversity among toxins from virulent strains. Microb Pathog. 1997;22(2):113–122. pmid:9050000
  7. 7. Wegener HC, Andresen LO, Bille-Hansen V. Staphylococcus hyicus virulence in relation to exudative epidermitis in pigs. Can J Vet Res. 1993;57(2):119–125. pmid:8490806
  8. 8. Fudaba Y, Nishifuji K, Andresen LO, Yamaguchi T, Komatsuzawa H, Amagai M, et al. Staphylococcus hyicus exfoliative toxins selectively digest porcine desmoglein 1. Microb Pathog. 2005;39(5–6):171–176. pmid:16257503
  9. 9. Rosander A, Guss B, Pringle MAR. An IgG-binding protein A homolog in Staphylococcus hyicus. Vet Microbiol. 2011; 149(1):273–276.
  10. 10. Lindmark R, Thorén-Tolling K, Sjöquist J. Binding of immunoglobulins to protein A and immunoglobulin levels in mammalian sera. J Immunol Methods. 1983; 62(1):1–13. pmid:6348168
  11. 11. Yang L, Biswas ME, Chen P. Study of binding between protein A and immunoglobulin G using a surface tension probe. Biophys J. 2003; 84(1):509–522. pmid:12524303
  12. 12. Claro T, Widaa A, O’Seaghdha M, Miajlovic H, Foster TJ, O’Brien FJ, et al. Staphylococcus aureus protein A binds to osteoblasts and triggers signals that weaken bone in osteomyelitis. PloS One. 2011;6(4):e18748. pmid:21525984
  13. 13. Foster TJ, Geoghegan JA, Ganesh VK, Höök M. Adhesion, invasion and evasion: the many functions of the surface proteins of Staphylococcus aureus. Nat Rev Microbiol. 2014;12(1):49–62. pmid:24336184
  14. 14. Langan KJ, Nothnagel EA. Cell surface arabinogalactan-proteins and their relation to cell proliferation and viability. Protoplasma. 1997;196(1–2):87–98.
  15. 15. Lee VT, Schneewind O. Protein secretion and the pathogenesis of bacterial infections. Genes Dev. 2001;15(14):1725–1752. pmid:11459823
  16. 16. Görg A, Weiss W, Dunn MJ. Current two-dimensional electrophoresis technology for proteomics. Proteomics. 2004;4(12):3665–3685. pmid:15543535
  17. 17. Gupta MK, Subramanian V, Yadav JS. Immunoproteomic identification of secretory and subcellular protein antigens and functional evaluation of the secretome fraction of Mycobacterium immunogenum, a newly recognized species of the Mycobacterium chelonae-Mycobacterium abscessus group. J Proteome Res. 2009;8(5):2319–2330. pmid:19209886
  18. 18. Liu X, Wang D, Ren J, Tong C, Feng E, Wang X, et al. Identification of the immunogenic spore and vegetative proteins of Bacillus anthracis vaccine strain A16R. PLoS One. 2013;8(3):e57959. pmid:23516421
  19. 19. Kurien BT, Dorri Y, Dillon S, Dsouza A, Scofield RH. An overview of Western blotting for determining antibody specificities for immunohistochemistry. Methods Mol Biol. 2011;717:55–67. pmid:21370024
  20. 20. Shao C, Tian Y, Dong Z, Gao J, Gao Y, Jia X, et al. The use of principal component analysis in MALDI-TOF MS: a powerful tool for establishing a mini-optimized proteomic profile. Am J Biomed Sci. 2012;4(1):85–101. pmid:22229059
  21. 21. Veiga-Malta I, Duarte M, Dinis M, Tavares D, Videira A, Ferreira P. Enolase from Streptococcus sobrinus is an immunosuppressive protein. Cell Microbiol. 2004;6(1):79–88. pmid:14678332
  22. 22. Mitchell RA, Liao H, Chesney J, Fingerle-Rowson G, Baugh J, David J, et al. Macrophage migration inhibitory factor (MIF) sustains macrophage proinflammatory function by inhibiting p53: regulatory role in the innate immune response. Proc Natl Acad Sci U S A. 2002;99(1):345–350. pmid:11756671
  23. 23. Saha S, Raghava GP. Prediction of continuous B-cell epitopes in an antigen using recurrent neural network. Proteins. 2006;65(1):40–48. pmid:16894596
  24. 24. Shen HB, Chou KC. Gpos-mPLoc: a top-down approach to improve the quality of predicting subcellular localization of Gram-positive bacterial proteins. Protein Pept Lett. 2009;16(12):1478–1484. pmid:20001911
  25. 25. Yu NY, Wagner JR, Laird MR, Melli G, Rey S, Lo R, et al. PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics. 2010; 26(13):1608–1615. pmid:20472543
  26. 26. Demleitner G, Gotz F. Evidence for importance of the Staphylococcus hyicus lipase pro-peptide in lipase secretion, stability and activity. FEMS Microbiol Lett. 1994;12:189–197.
  27. 27. Takeuchi S, Murase K, Kaidoh T, Maeda T, et al. A metalloprotease is common to swine, avian and bovine isolates of Staphylococcus hyicus. Veterinary microbiology 2000;71:169–174. pmid:10665544
  28. 28. Devriese LA, Hájek V, Oeding P, Meyer SA, Schleifer KH. Staphylococcus hyicus (Sompolinsky 1953) comb. nov. and Staphylococcus hyicus subsp. chromogenes subsp. nov. Int J Syst Evol Microbiol. 1978;28(4):482–490.
  29. 29. Liu K, Ba X, Yu J, Li J, Wei Q, Han G, et al. The phosphoenolpyruvate carboxykinase of Mycobacterium tuberculosis induces strong cell-mediated immune responses in mice. Mol Cell Biochem. 2006; 288(1–2):65–71. pmid:16691317
  30. 30. Kofoed CB, Vester B. Interaction of avilamycin with ribosomes and resistance caused by mutations in 23S rRNA. Antimicrob Agents Chemother. 2002;46(11):3339–3342. pmid:12384333
  31. 31. Winterhoff N, Goethe R, Gruening P, Rohde M, Kalisz H, Smith HE, et al. Identification and characterization of two temperature-induced surface-associated proteins of Streptococcus suis with high homologies to members of the Arginine Deiminase system of Streptococcus pyogenes. J Bacteriol. 2002;184(24):6768–6776. pmid:12446626
  32. 32. Farriaux JP, Dhondt JL, Cathelineau L, Ratel J, Fontaine G. Hyperammonemia through deficiency of ornithine carbamyl transferase. Z Kinderheilkd. 1974; 118(3):231–247. pmid:4446691
  33. 33. Hughes MJ, Moore JC, Lane JD, Wilson R, Pribul PK, Younes ZN, et al. Identification of major outer surface proteins of Streptococcus agalactiae. Infect Immun. 2002; 70(3):1254–1259. pmid:11854208
  34. 34. Sadykov MR, Thomas VC, Marshall DD, Wenstrom CJ, Moormeier DE, Widhelm TJ, et al. Inactivation of the Pta-AckA pathway causes cell death in Staphylococcus aureus. J Bacteriol. 2013; 195(13):3035–3044. pmid:23625849
  35. 35. Kobayashi M, Fitz L, Ryan M, Hewick RM, Clark SC, Chan S, et al. Identification and purification of natural killer cell stimulatory factor (NKSF), a cytokine with multiple biologic effects on human lymphocytes. J Exp Med. 1989;170(3):827–845. pmid:2504877
  36. 36. Trinchieri G, Wysocka M, D'Andrea A, Rengaraju M, Aste-Amezaga M, Kubin M, et al. Natural killer cell stimulatory factor (NKSF) or interleukin-12 is a key regulator of immune response and inflammation. Prog Growth Factor Res. 1992;4(4):355–368. pmid:1364096
  37. 37. Schneider A, Krüger C, Steigleder T, Weber D, Pitzer C, Laage R, et al. The hematopoietic factor G-CSF is a neuronal ligand that counteracts programmed cell death and drives neurogenesis. J Clin Invest. 2005;115(8):2083–2098. pmid:16007267
  38. 38. Tsou CL, Peters W, Si Y, Slaymaker S, Aslanian AM, Weisberg SP, et al. Critical roles for CCR2 and MCP-3 in monocyte mobilization from bone marrow and recruitment to inflammatory sites. J Clin Invest. 2007;117(4):902–909. pmid:17364026
  39. 39. Avilán L, Gualdrón-López M, Quiñones W, González-González L, Hannaert V, Michels PA, et al. Enolase: a key player in the metabolism and a probable virulence factor of trypanosomatid parasites-perspectives for its use as a therapeutic target. Enzyme Res. 2011;2011:932549. pmid:21603223
  40. 40. Wang J., et al., Cloning and Characterization of Surface-Localized α-Enolase of Streptococcus iniae, an Effective Protective Antigen in Mice. IJMS,2015. 16(7): p. 14490–14510. pmid:26121302
  41. 41. Dutta S., et al., Immunogenicity and protective potential of a Plasmodium spp. enolase peptide displayed on archaeal gas vesicle nanoparticles. MALARIA J, 2015. 14(1).
  42. 42. Hu C, Xiong N, Zhang Y, Rayner S, Chen S. Functional characterization of lipase in the pathogenesis of Staphylococcus aureus. Biochem Biophys Res Commun. 2012;419(4):617–620. pmid:22369949
  43. 43. Casas-Godoy L, Duquesne S, Bordes F, Sandoval G, Marty A. Lipases: an overview. Methods Mol Biol. 2012;861:3–30. pmid:22426709
  44. 44. Cadieux B, Vijayakumaran V, Bernards MA, McGavin MJ, Heinrichs DE. Role of lipase from community-associated methicillin-resistant Staphylococcus aureus strain USA300 in hydrolyzing triglycerides into growth-inhibitory free fatty acids. J Bacteriol. 2014;196(23):4044–4056. pmid:25225262
  45. 45. Mei JM, Nourbakhsh F, Ford CW, Holden DW. Identification of Staphylococcus aureus virulence genes in a murine model of bacteraemia using signature-tagged mutagenesis. Mol Microbiol. 1997;26(2):399–407. pmid:9383163
  46. 46. Basavanna S, Khandavilli S, Yuste J, Cohen JM, Hosie AH, Webb AJ, et al. Screening of Streptococcus pneumoniae ABC Transporter Mutants Demonstrates that LivJHMGF, a branched-chain amino acid ABC transporter, is necessary for disease pathogenesis. Infect Immun. 2009;77(8):3412–3423. pmid:19470745
  47. 47. Krucher NA, Rubin E, Tedesco VC, Roberts MH, Sherry TC, De Leon G. Dephosphorylation of Rb (Thr-821) in response to cell stress. Exp Cell Res. 2006;312(15):2757–2763. pmid:16764854
  48. 48. De Leon G, Sherry TC, Krucher NA. Reduced expression of PNUTS leads to activation of Rb-phosphatase and caspase-mediated apoptosis. Cancer Biol Ther. 2008;7(6):833–841 pmid:18360108