Skip to main content
Log in

Feature selection in the task of medical diagnostics on microarray data

  • Published:
Russian Journal of Genetics: Applied Research

Abstract

In view of the active use of DNA microarrays in solving various problems in medicine, bioinformatics, and molecular biology, there is a growing need of data mining algorithms capable of handling tasks in which the number of analyzed objects is smaller than the number of attributes by orders of magnitude. However, most of the currently existing algorithms were originally not intended to solving such complex, ill-conditioned problems. We have developed an approach based on the idea of rival similarity, which makes it possible to develop algorithms better suited for this purpose. We proposed one such algorithm, FRiS-GRAD, which simultaneously solves the problem of recognizing and selecting the system of informative features. Its efficiency is illustrated in a variety of medical problems compared to the most popular algorithms for the selection of informative features and recognition.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Institutional subscriptions

Similar content being viewed by others

References

  • Guyon, I., Weston, J., Barnhill, S., and Vapnik, V., Gene selection for cancer classification using support vector machines, Machine Learning, 2002, vol. 46, nos. 1–3, pp. 389–422.

    Article  Google Scholar 

  • Jeffery, I., Higgins, D., and Culhane, A., Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data, BMC Bioinformatics, 2006, vol. 7, p. 359.

    Article  PubMed Central  PubMed  Google Scholar 

  • Vapnik, V.N., Statistical Learning Theory, Wiley-Interscience, 1998.

    Google Scholar 

  • Zagoruiko, N.G., Borisova, I.A., Dyubanov, V.V., and Kutnenko, O.A., Methods of recognition based on the function of rival similarity, Pattern Recognition Image Analysis, 2008, vol. 18, no. 1, p. 1.

    Article  Google Scholar 

  • Zagoruiko, N.G., Borisova, I.A., Dyubanov, V.V., and Kutnenko, O.A., A quantitative measure of compactness and similarity in competitive space, Sib. Zh. Ind. Matem., Novosibirsk, 2010, vol. 13, no. 1 (141), pp. 59–71.

    Google Scholar 

  • Zagoruiko, N.G., Kognitivnyi analiz dannykh (Cognitive Data Analysis), Novosibirsk: Akadem. Izdat. GEO, 2013.

    Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to N. G. Zagoruiko.

Additional information

Original Russian Text © N.G. Zagoruiko, O.A. Kutnenko, I.A. Borisova, V.V. Dyubanov, D.A. Levanov, O.A. Zyranov, 2014, published in Vavilovskii Zhurnal Genetiki i Selektsii, 2014, Vol. 18, No. 4/2, pp. 898–903.

Rights and permissions

Reprints and permissions

About this article

Check for updates. Verify currency and authenticity via CrossMark

Cite this article

Zagoruiko, N.G., Kutnenko, O.A., Borisova, I.A. et al. Feature selection in the task of medical diagnostics on microarray data. Russ J Genet Appl Res 5, 330–334 (2015). https://doi.org/10.1134/S2079059715040164

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1134/S2079059715040164

Keywords

Navigation