Abstract
The nucleotide sequence of a gene fragment of cytochrome b (cytb) was determined, and data on the variability of this mtDNA region in chum salmon from certain populations on the northern coast of the Sea of Okhotsk and eastern Kamchatka populations were obtained. It was shown that the Kamchatka chum salmon population is characterized by the lowest values of nucleotide (π) and haplotype (h) diversity. The higher level of genetic diversity of the Sea of Okhotsk population is most likely due to the history of formation and distribution. Statistically significant (p < 0.001) genetic differences (Fst) between the studied groups of populations were found. The Okhotsk and Kamchatka chum salmon populations differ from the Canada chum salmon population in the structure of the cytb gene and the amino acid sequence of the studied fragment of this enzyme.
Similar content being viewed by others
References
Avise, J.C., Walker, D., and Johns, G.C., Speciation Durations and Pleistocene Effect on Vertebrate Phylogeography, Proc. Roy. Soc. Lond. B, 1998, vol. 265, pp. 1707–1712.
Avise, J.C., Molecular Markers, Natural History and Evolution, New York: London: Chapman and Hall, 1994.
Bachevskaya, L.T. and Pereverzeva, V.V., GU391990, GenBank, 2010.
Bandelt, H.-J., Forster, P., and Röhl, A., Median-Joining Networks for Inferring Intraspecific Phylogenies, Mol. Biol. Evol., 1999, vol. 16, pp. 37–48.
Brykov, V.A., Polyakova, N.E., and Prokhorova, A.V., Phylogeographic Analysis of Chum Salmon Oncorhynchus keta (Walbaum) in Asian Populations Based on mtDNA Variation, Genetika, 2003, vol. 39, no. 1, pp. 75–82 [Russ. J. Genet. (Engl. Transl.), 2003, vol. 39, no. 1, pp. 61–67].
Brykov, V.A., Kirilova, O.N., Kukhlevskii, A.D., et al., A Study of Mitochondrial DNA Variation in Populations of Chum Salmon Oncorhynchus keta (Walbaum) from Rivers of Primorye and the Sakhalin Island, Genetika, 2000, vol. 36, no. 10, pp. 1388–1393 [Russ. J. Genet. (Engl. Transl.), 2000, vol. 36, no. 10, pp. 1166–1176].
The Genetic Variability of Populations of the Chum Salmon Oncorhynchus keta (Walbaum) in the Ola River (the Mainland Coast of the Sea of Okhotsk), in Chteniya pamyati akademika K.V. Simakova: Tez. dokl. Vseros. nauch. konf. Magadan, 25–27 noyabrya 2009 (Academician K.V. Simakov Memorial Readings, Abstr. All-Russia Sci. Conf., Magadan, November 25–27, 2009), Magadan, 2009, pp. 156–157.
Chang, H.-W., Tan, K.-Y., and Chou, Y.C., EF105341, GenBank, 2007.
Cronin, M.A., Spearman, W.J., Wilmot, R.L., et al., Mitochondrial DNA Variation in Chinook Salmon and Chum Salmon Detected by Restriction Enzyme Analysis of Polymerase Chain Reaction (PCR) Product, Can. J. Fish. Aquat. Sci., 1993, vol. 50, no. 4, pp. 708–715.
Excoffier, L., Laval, G., and Schneider, S., Arlequin ver. 3.0: An Integrated Software Package for Population Genetics Data Analysis, Evol. Bioinformatics Online, 2005, vol. 1, pp. 47–50.
Fleming, M.A. and Cook, J.A., Phylogeography of Endemic Ermine (Mustela erminea) in Southeast Alaska, Mol. Ecol., 2002, no. 11, pp. 795–807.
Ginatulina, L.K. and Mashkin, S.A., The Study of Intraspecific Polymorphism of Mitochondrial DNA of Oncorhynchus keta (Walbaum) from Primorye and Sakhalin, Genetika, 1990, vol. 26, no. 4, pp. 729–738.
Nei, M., Molecular Evolutionary Genetics, New York: Columbia Univ. Press, 1987.
Oleinik, A.G. and Polyakova, N.E., Restriction Analysis of the Mitochondrial Genome of Fishes of the Family Salmonidae, Genetika, 1994, vol. 30, no. 9, pp. 1202–1214.
Polyakova, N.E., Semina, V.A., and Brykov, V.A., The Variability in Chum Salmon Oncorhynchus keta (Walbaum) Mitochondrial DNA and Its Connection with the Paleogeological Events in the Northwest Pacific, Genetika, 2006, vol. 42, no. 10, pp. 1388–1396 [Russ. J. Genet. (Engl. Transl.), 2006, vol. 42, no. 10, pp. 1164–1171].
Radchenko, O.A., Malyarchuk, B.A., and Solovenchuk, L.L., Comparative Restriction Enzyme Analysis of a Fragment of the Cytochrome b Gene in Pink, Chum, and Coho Salmon, Genetika, 1997, vol. 33, no. 4, pp. 471–474 [Russ. J. Genet. (Engl. Transl.), 1997, vol. 33, no. 4, pp. 383–386].
Russell, V.J., Hold, G.L., Pryde, S.E., et al., Use of Restriction Fragment Length Polymorphism to Distinguish between Salmon Species, J. Agric. Food Chem., 2000, no. 48, pp. 2184–2188.
Saitou, N. and Imanishi, T., Relative Efficiencies of the Fitch-Margoliash, Maximum-Parsimony, Maximum-Likelihood, Maximum-Evolution, and Neighbor-Joining Methods of Phylogenetic Tree Construction in Obtaining the Correct Tree, Mol. Biol. Evol., 1989, vol. 6, pp. 514–525.
Sato, S., Ando, J., Urawa, S., et al., Genetic Variation among Japanese Populations of Chum Salmon Inferred from Nucleotide Sequences of the Mitochondrial DNA Control Region, Zool. Sci., 2001, vol. 18, pp. 99–106.
Savin, V.A., Shpigal’skaya, N.Yu., and Varnavskaya, N.V., Interregional and Interpopulation Variability of Mitochondrial DNA Haplotypes of Chum Salmon Oncorhynchus keta (Walbaum) of Asia, in Issledovaniya vodnykh biologicheskikh resursov Kamchatki i severozapadnoi chasti Tikhogo okeana: Sb. nauch. tr. Kamchat. NII. ryb. khoz. i okeanografii (Studies of Marine Biological Resources of the Kamchatka Peninsula and the Northwestern Pacific Ocean: Collected Papers of Kamchatka Res. Inst. Fishery Oceanography), Petropavlovsk-Kamchatskii: KamchatNIRO, 2009, issue 12, pp. 16–32.
Shpigal’skaya, N.Yu., Brykov, V.A., and Kukhlevskii, A.D., Polymorphism of mtDNA of the Humpback Salmon of Kamchatka Peninsula and Sakhalin Island, in Issledovaniya vodnykh biologicheskikh resursov Kamchatki i severo-zapadnoi chasti Tikhogo okeana: Sb. nauch. tr. Kamchat. NII. ryb. khoz. i okeanografii (Studies of Marine Biological Resources of the Kamchatka Peninsula and the Northwestern Pacific Ocean: Collected Papers of Kamchatka Res. Inst. Fishery Oceanography), Petropavlovsk-Kamchatskii: KamchatNIRO, 2009, issue 13, pp. 74–87.
Tajima, F., Statistical Method for Testing the Neutral Mutation Hypothesis by DNA Polymorphism, Gen. Soc. Amer., 1989, pp. 585–595.
Tamura, K., Dudley, J., Nei, M., et al., MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0, Mol. Biol. Evol., 2007, vol. 24, pp. 1596–1599.
Yoon, M., Sato, S., Seeb, J.E., et al., Genetic Variation among Chum Salmon Population in Pacific Rim Inferred from Mitochondrial and Microsatellite DNA Analyses, NPAFS Doc., 2005, no. 898.
Author information
Authors and Affiliations
Corresponding author
Additional information
Original Russian Text © L.T. Bachevskaya, V.V. Pereverzeva, 2010, published in Informatsionnyi Vestnik Vavilovskogo Obshchestva Genetikov i Selektsionerov, 2010, Vol. 14, No. 3, pp. 537–545.
Rights and permissions
About this article
Cite this article
Bachevskaya, L.T., Pereverzeva, V.V. Intraspecific polymorphism of mitochondrial cytochrome b gene fragment of the chum salmon (Oncorhynchus Keta Walbaum) from the rivers of eastern Kamchatka and the northern coast of the Sea of Okhotsk. Russ J Genet Appl Res 1, 204–210 (2011). https://doi.org/10.1134/S2079059711030026
Published:
Issue Date:
DOI: https://doi.org/10.1134/S2079059711030026