Abstract
The phylogenetic position of the genera Rossithidium and Psammothidium was studied using the plastid gene rbcL. The genus Rossithidium is not an independent taxon and should be transferred to Psammothidium. Taxa from Psammothidium genus formed a sister, but independent clade to taxa with Achnanthidium. Our data has shown that the order Achnathales was not the natural taxon and should be reduced, but the three families included in it were natural. Genera like Psammothidium (including Rossithidium) and Lemnicola should be included into the family Achnanthidiaceae. Therefore, raphe does not play an important role in diatom taxonomy and its loss occurred many times during the evolution of diatoms.
Similar content being viewed by others
References
Abarca, N., Jahn, R., Zimmermann, J., and Enke, N., Does the cosmopolitan diatom Gomphonema parvulum (Kutzing) Kutzing have a biogeography?, PLoS One, 2014, vol. 9, no. 1, pp. 1–18.
Bazinet, A.L., Zwickl, D.J., and Cummings, M.P., A gateway for phylogenetic analysis powered by grid computing featuring GARLI 2.0, Systemat. Biol., 2014, vol. 63, no. 5, pp. 812–818.
Benhke, A., Friedl, T., Chepurnov, V.A., and Mann, D.G., Reproductive compatibility and rDNA sequence analysis in the Sellaphora pupula species complex (Bacillariophyta), J. Phycol., 2004, vol. 40, no. 1, pp. 193–208.
Bory de Saint-Vincent, J.B.M., Dictionnaire classique d’histoire naturelle, Paris, Paris: Rey & Gravier, 1822.
Bruder, K. and Medlin, L.K., Molecular assessment of phylogenetic relationships in selected species/genera in the naviculoid diatoms (Bacillariophyta). I. The genus Placoneis, Nova Hedwigia, 2007, vol. 85, nos. 3–4, pp. 331–352.
Bruder, K. and Medlin, L.K., Morphological and molecular investigations of naviculoid diatoms. II. Selected genera and families, Diatom Res., 2008a, vol. 23, no. 2, pp. 283–329.
Bruder, K. and Medlin, L.K., Morphological and molecular investigations of naviculoid diatoms. III. Hippodonta and Navicula s.s., Diatom Res., 2008b, vol. 23, no. 2, pp. 331–347.
Bruder, K., Sato, S., and Medlin, L.K., Morphological and molecular investigations of naviculoid diatoms. IV. Pinnularia vs. Caloneis, Diatom, 2008, vol. 24, pp. 8–24.
Bukhtiyarova, L.N., Additional data on the diatom genus Karayevia and a proposal to reject the genus Kolbesia, Nova Hedwigia, Beiheft, 2006, vol. 130, pp. 85–96.
Bukhtiyarova, L.N., Revision of the genus Achnanthes Bory s. lato (Bacillariophyta). 1. A historical essay. Genera Achnanthes Bory s. str. and Achnanthidium Kutzing s. str., Algologiya, 2007a, vol. 17, no. 1, pp. 112–122.
Bukhtiyarova, L.N., Revision of the genus Achnanthes Bory s. lato (Bacillariophyta). 2. New monoraphid genera and the key to their identification, Algologiya, 2007b, vol. 17, no. 4, pp. 492–508.
Bukhtiyarova, L.N. and Round, F.E., Revision of the genus Achnanthes sensu lato. Psammothidium, a new genus based on A. marginulatum, Diatom Res., 1996, vol. 11, pp. 1–30.
Cleve, P.T., Synopsis of the naviculoid diatoms, pt. II, Kongliga Svenska-Vetenskaps Akad. Handlingar, 1895, vol. 27, no. 3, pp. 1–219.
Cox, E.J., Pore occlusions in raphid diatoms—a reassessment of their structure and terminology, with particular reference to members of the cymbellales, Diatom, 2004, vol. 20, pp. 33–46.
Cox, E.J., Achnanthes sensu stricto belongs with genera of the Mastogloiales rather than with other monoraphid diatoms (Bacillariophyta), Eur. J. Phycol., 2006a, vol. 41, pp. 67–81.
Cox, E.J., Raphe loss and spine formation in Diadesmis gallica (Bacillariophyta)—an intriguing example of phenotypic polymorphism in a diatom, Nova Hedwigia, Beiheft, 2006b, vol. 130, pp. 163–176.
Cox, E.J., Ontogeny, homology, and terminology—wall morphogenesis as an aid to character recognition and character state definition for pennate diatom systematics, J. Phycol., 2012, vol. 48, pp. 1–31.
Desrosiers, C., Witkowski, A., Riaux-Gobin, C., Zglobicka, Z., Kurzydlowski, K.J., Eulin, A., Leflaive, J., and Ten-Hage, L., Madinithidium gen. nov. (Bacillariophyceae), a new monoraphid diatom genus from the tropical marine coastal zone, Phycologia, 2014, vol. 53, no. 6, pp. 583–592.
Díaz, C.A. and Maidana, N.I., A new monoraphid diatom genus: Haloroundia Díaz & Maidana, Nova Hedwigia. Beiheft, 2006, vol. 130, pp. 177–184.
Furey, P.C., Mayama, S., Lowe, R.L., and Catenazzi, A., Frankophila wayqechae sp. nov., a new aerophilic diatom species from the Peruvian Andes, South America, Diatom Res., 2012, vol. 27, pp. 165–175.
Granetti, B., Struttura di alcune valve teratologische di Navicula gallica (W. Smith) Van Heurck, Giornale Botanico Italiano, 1978, vol. 112, pp. 1–12.
Hall, T.A., BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT, Nucl. Acids Symp. Ser., 1999, vol. 41, pp. 95–98.
Hustedt, F., Die Kieselalgen Deutschlands, Österreichs und der Schweiz unter Berücksichtigung der übrigen Länder Europas sowie der angrenzenden Meeresgebiete, Kryptogamen Flora Deutsch., Österreich Schweiz, 1928, vol. 7, no. 1, pp. 273–464.
Hustedt, F., Die Kieselalgen Deutschlands, Österreichs und der Schweiz unter Berücksichtigung der übrigen Länder Europas sowie der angrenzenden Meeresgebiete, Kryptogamen Flora Deutsch., Österreich Schweiz, 1929, vol. 7, no. 1, pp. 465–608.
Hustedt, F., Kryptogamen-Flora von Deutschland, Österreich und der Schweiz, Band VII, Die Kieselalgen, Leipzig: Akademische, 1933, Bd. VII, S. 321–432.
Katoh, K. and Toh, H., Parallelization of the MAFFT multiple sequence alignment program, Bioinformatics, 2010, vol. 26, pp. 1899–1900.
Kermarrec, L., Ector, L., Bouchez, A., Rimet, F., and Hoffmann, L., A preliminary phylogenetic analysis of the Cymbellales based on 18s rDNA gene sequencing, Diatom Res., 2011, vol. 26, no. 3, pp. 305–315.
Kociolek, J.P. and Rhode, K., Raphe vestiges in “Asterionella” species from Madagascar: evidence for a polyphyletic origin of the araphid diatoms?, Cryptogamie, Algologie, 1998, vol. 19, pp. 57–74.
Kociolek, J.P., Stepanek, J.G., Lowe, R.L., Johansen, J.R., and Sherwood, A.R., Molecular data show the enigmatic cave-dwelling diatom Diprora (Bacillariophyceae) to be a raphid diatom, Eur. J. Phycol., 2013, vol. 48, no. 4, pp. 474–484.
Kulikovskiy, M.S., Lange-Bertalot, H., and Witkowski, A., Nupela matrioschka spec. nov., Nupela thurstonensis comb. nov. and Nupela neogracillima comb. et nom. nov. (Bacillariophyceae): a critical analysis of their morphology, Pol. Bot. J., 2009, vol. 54, no. 1, pp. 13–20.
Kulikovskiy, M.S., Lange-Bertalot, H., Witkowski, A., and Khursevich, G.K., Achnanthidium sibiricum (Bacillariophyta), a new species from bottom sediments in Lake Baikal, Algological Studies, 2011, vols. 136/137, pp. 77–87.
Kulikovskiy, M.S., Lange-Bertalot, H., Metzeltin, D., and Witkowski, A., Lake Baikal: hotspot of endemic diatoms. I, Iconographia Diatomologica, 2012, vol. 23, pp. 7–608.
Kulikovskiy, M., Lange-Bertalot, H., and Witkowski, A., Gliwiczia gen. nov., a new achananthoid diatom genus with description of four species new for science, Phytotaxa, 2013, vol. 109, no. 1, pp. 1–16.
Kulikovskiy, M., Gusev, E., Andreeva, S., and Annenkova, N., Phylogenetic position of the diatom genus Geissleria Lange- Bertalot & Metzeltin and description of two new species from Siberian mountain lakes, Phytotaxa, 2014, vol. 177, no. 5, pp. 249–260.
Kützing, F.T., Die Kieselschaligen. Bacillarien oder Diatomeen, Nordhausen, 1844.
Lange-Bertalot, H., Frankophila, Mayamaea und Fistulifera: drei neue Gattung der Klasse Bacillariophyceae, Arc. Protistenk, 1997, vol. 148, pp. 65–75.
Main, S.P., Diprora haenaensis gen. et sp. nov., a filamentous, pseudoaerial, araphid diatom from Kaua’i (Hawaiian Islands), Diatom Res., 2003, vol. 18, no. 2, pp. 259–272.
Mann, D.G., Sieves and flaps: siliceous minutiae in the pores of raphid diatoms, in Proc. 6th Diatom Sympos., Frankfurt: Koeltz Sci. Books, 1981, pp. 279–300.
Mayama, S. and Idei, M., Fine structure of two Hygropetra species, Hygropetra gelasina sp. nov. and Hygropetra balfouriana (Bacillariophyta), and the taxonomic position of the genus with special reference to Frankophila, Phycol. Res., 2009, vol. 57, pp. 290–298.
Medlin, L.K. and Kaczmarska, I., Evolution of the diatoms: V. Morphological and cytological support for the major clades and a taxonomic revision, Phycologia, 2004, vol. 43, no. 3, pp. 245–270.
Monnier, O., Lange-Bertalot, H., Hoffmann, L., and Ector, L., The genera Achnanthidium Kützing and Psammothidium Bukhtiyarova et Round in the family Achnanthidiaceae (Bacillariophyceae): a reappraisal of the different criteria, Cryptogamie, Algol., 2007, vol. 28, no. 2, pp. 141–158.
Nakov, T., Ruck, E., Galachyants, Y., Spaulding, S.A., and Theriot, E.C., Molecular phylogeny of the Cymbellales (Bacillariophyceae, Heterokontophyta) with a comparison of models for accommodating rate variation across sites, Phycologia, 2014, vol. 53, no. 4, pp. 359–373.
Potapova, M. and Hamilton, P., Morphological and ecological variation within the Achnanthidium minutissimum (Bacillariophyceae) species complex, J. Phycol., 2007, vol. 43, pp. 561–575.
Potapova, M.G., New species and combinations in monoraphid diatoms (family Achnanthidiaceae) from North America, Diatom Res., 2012, vol. 27, no. 1, pp. 29–42.
Riaux-Gobin, C., Witkowski, A., and Ruppel, M., Scalariella a new genus of monoraphid diatom (Bacillariophyta) with a bipolar distribution, Fottea, 2012, vol. 12, pp. 13–25.
Rimet, F., Kermarrec, L., Bouchez, A., Hoffmann, L., Ector, L., and Medlin, L.K., Molecular phylogeny of the family Bacillariaceae based on 18S rDNA sequences: focus on freshwater Nitzschia of the section Lanceolatae, Diatom Res., 2011, vol. 26, no. 3, pp. 273–291.
Ronquist, F. and Huelsenbeck, J.P., MrBayes 3: Bayesian phylogenetic inference under mixed models, Bioinformatics, 2003, vol. 19, pp. 1572–1574.
Round, F.E., Crawford, R.M., and Mann, D.G., The Diatoms. Biology and Morphology of the Genera, Cambridge: Camb. Univ. Press, 1990.
Round, F.E. and Bukhtiyarova, L.N., Four new genera based on Achnanthes (Achnanthidium) together with a redefinition of Achnanthidium, Diatom Res., 1996, vol. 11, pp. 345–361.
Ruck, E.C. and Theriot, E.C., Origin and evolution of the canal raphe system in diatoms, Protist, 2011, vol. 162, pp. 723–737.
Sims, P.A., Mann, D.G., and Medlin, L.K., Evolution of the diatoms: insights from fossil, biological and molecular data, Phycologia, 2006, vol. 45, no. 4, pp. 361–402.
Sorhannus, U., Diatom phylogenetics inferred based on direct optimization of nuclear-encoded SSU rRNA sequences, Cladistics, 2004, vol. 20, no. 5, pp. 487–497.
Vyverman, W. and Compère, P., Nupela giluwensis gen. & spec. nov. A new genus of naviculoid diatoms, Diatom Res., 1991, vol. 6, no. 1, pp. 175–179.
Wetzel, E.C., Lange-Bertalot, H., Morales, E., Bicudo, D.C., Hoffmann, L., and Ector, L., Bicudoa amazonica gen. nov. et sp. nov. (Bacillariophyta) a new freshwater diatom from the Amazon basin with a complete raphe loss in the Eunotioid lineage, Phytotaxa, 2012, vol. 75, pp. 1–18.
Wojtal, A.Z., Species composition and distribution of diatom assemblages in spring waters from various geological formations in southern Poland, Bibl. Diatom., 2013, vol. 59, pp. 1–436.
Author information
Authors and Affiliations
Corresponding author
Additional information
Original Russian Text © M.S. Kulikovskiy, S.A. Andreeva, E.S. Gusev, I.V. Kuznetsova, N.V. Annenkova, 2016, published in Izvestiya Akademii Nauk, Seriya Biologicheskaya, 2016, No. 5, pp. 468–478.
Rights and permissions
About this article
Cite this article
Kulikovskiy, M.S., Andreeva, S.A., Gusev, E.S. et al. Molecular phylogeny of monoraphid diatoms and raphe significance in evolution and taxonomy. Biol Bull Russ Acad Sci 43, 398–407 (2016). https://doi.org/10.1134/S1062359016050046
Received:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S1062359016050046