Abstract
Using microsatellite markers, the genetic diversity, family ties, and genetic drift were studied in three breeds and seven populations of wool (fleece-bearing) goats of Central and Middle Asia. The parameters of allelic and genetic diversity of indigenous populations of Mongolian goats (Gurvan Egch, Darkhat, Burakh Zavkhan, Ulgiy Uulan, Altai Uulan), two populations of local Tuvan goats, Soviet and Tajik wool breeds of goat, and Orenburg fleece-bearing goat were obtained. Using a principal component analysis, two main groups of goats were detected, in one of which mainly Mongolian native populations are united, while in the other are Middle Asian breeds of goats. The populations of Tuvan local goat were divided between the appropriate groups. At the same time, Mongolian goats were characterized by a high intrapopulation diversity and a fairly low level of genetic differences between the populations. Data obtained indicate the existence of a correlation of genetic relations between the considered populations and breeds of fleece-bearing goats and their geographical distribution.
Similar content being viewed by others
REFERENCES
Mahmoudi, B., Bayat, M., Sadeghi, R., et al., Genetic diversity among three goat populations assessed by microsatellite DNA markers in Iran, Global Vet., 2010, vol. 4, no. 2, pp. 118—124.
Nomura, K., Ishii, K., Dadi, H., et al., Microsatellite DNA markers indicate three genetic lineages in East Asian indigenous goat populations, Anim. Genet., 2012, vol. 43, pp. 760—767. https://doi.org/10.1111/j.1365-2052.2012.02334.x
Elzarei, M.F. and Mousa, E.F., Molecular and morphological characteristics of Aradi goats with prediction equation of growth pattern, Int. J. Biol., 2017, vol. 9, no. 2, pp. 29—38. https://doi.org/10.5539/ijb.v9n2p29
Wagner, R.P., Understanding inheritance: an introduction to classical and molecular genetics, Los Alamos Sci. LANL, 1992, no. 20, pp. 3—67.
Dakin, E.E. and Avise, J.C., Microsatellite null alleles in parentage analysis, Heredity, 2004, vol. 93, pp. 504—509. https://doi.org/10.1038/sj.hdy.6800545
Zelenskii, G.G. and Misharev, S.S., Orenburgskaya pukhovaya koza (Orenburg Downy Goat), Chkalov: Chkalov. Kn. Izd., 1949.
Kharzinova, V.R., Petrov, S.N., Dotsev, A.V., et al., Population-genetic characteristics of some goat breeds based on the analysis of microsatellites, Ovtsy, Kozy, Sherst. Delo, 2019, no. 3, pp. 7—12.
Kosimov, M.A. and Kosimov, F.F., Tajik wool breed of goats, Zootekhniya, 2015, no. 3, pp. 5—7.
Al’kov, G.V., Downy goat breeding in the Altai mountain region, in Sbornik Nauchnekh Trudov Vserossiiskogo Nauchno-Issledovatel’skogo Instituta Ovtsevodstva i Kozovodstva, Stavropol’, 2007, vol. 3, pp. 142—146.
Nyamsamba, D., Nomura Nozawa, K., Yokohama, M., et al., Genetic relationship among Mongolian native goat populations estimated by blood protein polymorphism, Small Ruminant Res., 2003, vol. 47, pp. 3171—3181.
Bolormaa, S., Ruvinsky, A., Walkden-Brown, S., and van der Werf, J., Genetic relationships among Australian and Mongolian fleece-bearing goats, Asian-Aust. J. Anim. Sci., 2008, vol. 21, no. 11, pp. 1535—1543. https://doi.org/10.5713/ajas.2008.70635
Takahashi, H., Nyamsamba, D., Mandakh, B., et al., Genetic structure of Mongolian goat populations using microsatellite loci analysis, Asian-Aust. J. Anim. Sci., 2008, vol. 21, no. 7, pp. 947—953. https://doi.org/10.5713/ajas.2008.70285
Sambu-Khoo, Ch.S., Productive and biological features of goats of different origin in the Republic of Tyva, Cand. Sci. (Agric.) Dissertation, Moscow: L.K. Ernst Federal Research Center for Animal Husbandry, 2016.
Nei, M., Estimation of average heterozygosity and genetic distance from a small number of individuals, Genetics, 1978, vol. 89, pp. 583—590.
Kalinowski, S.T., Counting alleles with rarefaction: private alleles and hierarchical sampling designs, Conserv. Genet., 2004, no. 5, pp. 539—543. https://doi.org/10.1023/B:COGE.0000041021.91777.1a
Weir, B.S. and Cockerham, C.C., Estimating F-statistics for the analysis of population structure, Evolution, 1984, vol. 38, pp. 1358—1370. https://doi.org/10.2307/2408641
Jost, L., GST and its relatives do not measure differentiation, Mol. Ecol., 2008, vol. 17, no. 18, pp. 4015—4026. https://doi.org/10.1111/j.1365-294X.2008.03887.x
Huson, D.H. and Bryant, D., Application of phylogenetic networks in evolutionary studies, Mol. Biol. Evol., 2006, vol. 23, no. 2, pp. 254—267. https://doi.org/10.1093/molbev/msj030
R Core Team, R: a language and environment for statistical computing, Vienna: R Foundation for Statistical Computing, 2018. https://www.R-project.org.
Peakall, R. and Smouse, P.E., GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update, Bioinformatics, 2012, vol. 28, no. 19, pp. 2537—2539. https://doi.org/10.1093/bioinformatics/bts460
Pritchard, J.K., Stephens, M., and Donnelly, P., Inference of population structure using multilocus genotype data, Genetics, 2000, vol. 155, no. 2, pp. 945—959.
Keenan, K., McGinnity, P., Cross, T.F., et al., DiveRsity: an R package for the estimation and exploration of population genetics parameters and their associated errors, Methods Ecol. Evol., 2013, no. 4, pp. 782—788. https://doi.org/10.1111/2041-210X.12067
Jombart, T., Adegenet: a R package for the multivariate analysis of genetic markers, Bioinformatics, 2008, vol. 24, no. 11, pp. 1403—1405. https://doi.org/10.1093/bioinformatics/btn129
Wickham, H., Ggplot2: Elegant Graphics for Data Analysis, Springer-Verlag, 2009. https://doi.org/10.1007/978-3-319-24277-4.
Gombozhapov, A., The problem of nomadism in modern Mongolia, Vlast’, 2009, no. 10, pp. 129—132.
Hedrick, P.W., Genetics of Populations, Boston: Jones and Bartlett, 2003.
Funding
The studies were supported by the Russian Science Foundation (project nos. 19-76-20061 and 19-76-20006).
Author information
Authors and Affiliations
Corresponding author
Ethics declarations
Conflict of interest. The authors declare that they have no conflict of interest.
Statement on the welfare of animals. All applicable international, national, and/or institutional guidelines for the care and use of animals were followed.
Additional information
Translated by A. Barkhash
Rights and permissions
About this article
Cite this article
Beketov, S.V., Piskunov, A.K., Voronkova, V.N. et al. Genetic Diversity and Phylogeny of Fleece-Bearing Goats of Central and Middle Asia. Russ J Genet 57, 816–824 (2021). https://doi.org/10.1134/S1022795421070036
Received:
Revised:
Accepted:
Published:
Issue Date:
DOI: https://doi.org/10.1134/S1022795421070036