Abstract
Molecular genetic analysis of Altai osmans of the genus Oreoleuciscus from two different parts of the range was carried out. In this study, based on the mitochondrial Co-1 gene sequence, a total of 25 fish specimens belonging to four genera were examined: (1) O. humilis, 2 specimens; O. potanini, 13 specimens; (2) Pseudaspius leptocephalus, 1 specimen; (3) Tribolodon brandtii, T. hakonensis, and T. sachalinensis from the GanBank database, 9 speciens; and (4) Leuciscus waleckii, 1 specimen (used as an outgroup). The p-distances were very low both within and between the species: (1) 0.20 ± 0.03%; (2) 0.40 ± 0.12%; and (1–2) 0.80 ± 0.04%. To visualize the relationships among all of the species examined, the neighbor joining (NJ), maximum parsimony (MP), Bayesian (BA), and maximum likelihood (ML) trees were constructed. The results obtained using these methods were very similar. It was demonstrated that species assignment of the individuals (barcoding) with the help Co-1 gene was effective, despite of very low divergence of the two osman taxa, which was comparable with typical intraspecific values in other animal groups. Taxonomic status of O. potanini and O. humilis requires further investigation with paying attention to low genetic distances between these species along with the lack of material from sympatric parts of the ranges.
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References
Abramson, N.I., Phylogeography: Results, Problems, Perspectives, Vestn. VOGiS, 2007, vol. 11, no. 2, pp. 307–331.
Lukashov, V.V., Molekulyarnaya evolyutsiya i filogeneticheskii analiz (Molecular Evolution and Phylogenetic Analysis), Moscow: BINOM, 2009.
Avise, J.C., Phylogeography: The History and Formation of Species, Cambridge: Harvard Univ. Press, 2001.
Miya, M., Saitoh, K., Wood, R., et al., New Primers for Amplifying and Sequencing the Mitochondrial ND4/ND5 Gene Region of the Cypriniformes (Actinopterygii: Ostariophysi), Ichthyol. Soc. Jap., 2006, vol. 53, pp. 75–81.
Kartavtsev, Yu.Ph. and Li, Zh.-S., Analysis of Nucleotide Diversity at Genes Cyt-b and Co-1 on the Population, Species and Genus Levels, Genetika (Moscow), 2006, vol. 42, no. 4, pp. 341–362.
Kartavtsev, Y.Ph., Analysis of Sequence Diversity at Two Mitochondrial Genes on Different Taxonomic Levels: Applicability of DNA Based Distance Data in Genetics of Speciation and Phylogenetics, Genetic Diversity, Mahoney C.L. and Springer, D.A., Eds., New York: Nova Sci. Publ., 2009, pp. l–50.
Heber, P.D., Stoeckle, M.Y., Zemlak, T.S., and Francis, C.M., Identification of Birds through DNA Barcodes, PLoS Biol., 2004, vol. 2, p. 312.
Kim, I.-C., Jung, S.-O., Lee, Y.M., et al., The Complete Mitochondrial Genome of the Ray Fish Raja porosa (Chondrichthyes, Rajidae), DNA Seq., 2005, vol. 16, pp. 187–194.
Ward, R.D., Zemlak, T.S., Ihnes, B.H., et al., DNA Barcoding Australia Fish Species, Philos. Trans. R. Soc. London, Ser. B, 2005, vol. 360, pp. 1847–1857.
Kartavtsev, Yu.F., Molekulyarnaya evolyutsiya i populyatsionnaya genetika (Molecular Evolution and Population Genetics), Vladivostok: Izd. Dal’nevostochnogo Univ., 2005.
Johns, G.C. and Avise, J.C., A Comparative Summary of Genetic Distances in the Vertebrates from the Mitochondrial Cytochrome b Gene, Mol. Biol. Evol., 1998, vol. 15, pp. 1481–1490.
Kartavtsev, Y.P., Park, T.-J., Vinnikov, K.A., et al., Cytochrome b (Cyt-b) Gene Sequence Analysis in Six Flatfish Species (Teleostei, Pleuronectidae), with Phylogenetic and Taxonomic Insights, Mar. Biol. (Berlin), 2007, vol. 152, pp. 757–773.
Kartavtsev, Y.P., Park, T.-J., Lee, J.-S., et al., Phylogenetic Inferences Introduced on Cytochrome b Gene Sequences Data for Six Flatfish Species (Teleostei, Pleuronectidae) and Species Synonymy between Representatives of Genera Pseudopleuronectes and Hippoglossoides from Far Eastern Seas, Russ. J. Genet., 2008, vol. 44, no. 4, pp. 451–458.
Nei, M. and Kumar, S., Molecular Evolution and Phylogenetics, New York: Oxford Univ. Press, 2000.
Bannikova, A.A., Molecular Markers and the Modern Phylogenetics of Mammals, Zh. Obshch. Biol., 2004, vol. 65, no. 4, pp. 278–305.
Bogutskaya, N.G., Morphological Bases of the System of the Subfamily Leusiscinae, (Cyprinidae), Vopr. Ikhtiol., 1990, vol. 30, no. 6, pp. 920–933.
Kartavtsev, Yu.Ph., Chiba Satoru, N., Takayuki Uematsu, et al., Genetic Divergence and Phylogenetic Independence of Far Eastern Species in Subfamily Leuciscinae (Pisces: Cyprinidae) Inferred from Mitochondrial DNA Analyses, Genes Genet. Syst., 2007, vol. 82, pp. 329–340.
Bogutskaya, N.G. and Naseka, A.M., Katalog beschelyustnykh i ryb presnykh i solonovatykh vod Rossii s nomenklaturnymi i taksonomicheskimi kommentariyami (Catalog of Agnatha and Fish of Fresh and Brackish Waters of Russia with Nomenclatural and Taxonomic Commentaries), Moscow: KMK, 2004.
Kartavtsev, Yu.F., Sviridov, V.V., Khanzava, N., and Sazaki, T., Genetic Divergence of Far Eastern Dace Species of the Genus Tribolodon (Pisces: Cyprinidae) and Closely Related Taxa, Russ. J. Genet., 2002, vol. 38, no. 11, pp. 1518–1531.
Manchin, E. and Dgebuadze, Yu.Yu., Alien Fish Species in the Mongolian Part of the Selenga River Basin, Ross. Zh. Biol. Invaziy, 2010, no. 2, pp. 89–96.
Slyn’ko, Yu.V. and Dgebuadze, Yu.Yu., Population Genetic Analysis of Altai Osmans (Oreoleuciscus, Cyprinidae) from Mongolia Basins, Vopr. Ikhtiol., 2009, vol. 49, no. 5, pp. 632–645.
Bogutskaya, N.G., A Revision of Altai Osmans of the Genus Oreoleuciscus (Cyprinidae: Leuciscinae) with a Description of a New Species, O. angusticephalus, from River Kobdo (Hovd) System, West Mongolia, New Contributions to Freshwater Fish Research (Proc. Zool. Inst. Russ. Akad. Sci.), St. Petersburg, 2001, vol. 287, pp. 5–44.
Kottelat, M., Fishes of Mongolia: A Check-List of the Fishes Known to Occur in Mongolia with Comments on Systematics and Nomenclature. The World Bank, Washington DC, 2006.
Gundrizer, A.H., Study of Altai Osmans of the Genus Oreoleuciscus Warp., Problemy Ekol., 1976, no. 4, pp. 157–166.
Hulsenbeck, J.P. and Rondquist, F., Mr., BAYES: Bayesian Inference of Phylogenetic Trees, Bioinformatics, 2001, vol. 17, no. 8, pp. 754–755.
Golubtsov, A.S., Berendzen, P.B., and Annet, C.A., Morphological Variation and Taxonomic Status of Altai Osmans, Oreoleuciscus, from the Upper Reaches of the Ob River System, J. Fish. Biol., 1999, vol. 54, pp. 878–899.
Sharina, S.N. and Kartavtsev, Yu.F., Flatfish (Teleostei, Pleuronectiformes) Phylogenetic Analysis Based on the Study of Nucleotide Sequences of the Cytochromoxidase 1 Gene (Co-1), Russ. J. Genet., 2010, vol. 46, no. 3, pp. 401–406.
Gafurov, Yu.M., Dezoksiribonukleazy: Metody issledovaniya i svoistva (Deoxiribonucleases: Methods of Study and Properties), Vladivostok: Dal’nauka, 1999.
Sambrook, J., Fritsch, E.F., and Maniatis, T., Molecular Cloning: A Laboratory Manual, Cold Spring Harbor: Cold Spring Harbor Lab., 1989.
Thompson, J.D., Higgins, D.G., and Gibson, T.J., Clustal W: Improving the Sensitivity of Progressive Multiple Sequence Alignment through Sequence Weighting, Position, Specific Gap Penalties, and Weight Matrix Choice, Nucleic Acids Res., 1994, vol. 22, pp. 4673–4680.
Kumar, S., Tamura, K., and Nei, M., MEGA3: Integrated Software for Molecular Evolutionary Genetics Analysis and Sequence Alignment, Briefings Bioinform., 2004, vol. 5, no. 2, pp. 150–163.
Hall, B., Phylogenetic Trees Made Easy: A How-To Manual for Molecular Biologists, Sunderland: Sinauer Associates, 2001.
Posada, D. and Grandal, K.A., MODELTEST: Testing the Model DNA Substitution, Bioinformatics, 1998, vol. 14, pp. 817–818.
Swofford, D.L., PAUP* Phylogenetic Analysis Using Parsinomy (and Other Methods): Beta Version 10, Sunderland: Sinauer Associates, 2002.
Page, R.D.M., TREEVIEW: An Application to Display Phylogenetic Trees on Personal Computers, Cabios Appl. Note, 1996, vol. 12, no. 4, pp. 357–358.
STATISTICA for Windows (Data Analysis Software System), Version 7.1, Tulsa: StatSoft, 2006.
He, Sh., Richard, L. Mayden, Xuzheng Wang, et al., Molecular Phylogenetics of the Family Cyprinidae (Actinopterygii: Cypriniformes) as Evidenced by Sequence Variation in the First Intron of S7 Ribosomal Protein-Coding Gene: Further Evidence from a Nuclear Gene of the Systematic Chaos in the Family, Mol. Phylogenet. Evol., 2008, vol. 46, pp. 818–829.
Sasaki, T., Kartavtsev Yu.P., Chiba Satoru, N., et al., Genetic Divergence and Phylogenetic Independence of Far Eastern Species in Subfamily Leuciscinae (Pisces: Cyprinidae) Inferred from Mitochondrial DNA Analyses, Genes Genet. Syst., 2007, vol. 82, no. 4, pp. 329–340.
Varpakhovskii, N.A., Monografiya novogo roda karpovykh ryb (Oreoleuciscus) (Monograph of the New Cyprinid Fish Genus (Oreoleuciscus)), St. Petersburg: Izd. Imperatorskoy Akad. Nauk, 1889.
Berg, L.S., Fauna Rossii i sopredel’nykh stran: Ryby (Marsipobranchii i Pisces) (Fauna of Russia and Adjacent Countries: Fishes (Marsipobranchii and Pisces)), St. Petersburg: Izd. Imperatorskoy Akad. Nauk, 1912, vol. 3, no. 1.
Berg, L.S., Ryby presnykh vod SSSR i sopredel’nykh stran (Freshwater Fishes of the Soviet Union and Adjacent Countries), Moscow: Izd. Akad. Nauk SSSR, 1949, part 2, 4th ed.
Dashdorzh, A., Dulmaa, A., and Pivinicka, K., Contribution to the Systematics of the Genus Oreoleuciscus Warpachowski, 1889 (Cyprinidae), Vestn. Cheskoslov. Spol. Zool., 1969, vol. 33, no. 4, pp. 289–299.
Ocock, J., Bassanjav, J.J., Baillie, E.M., et al., Mongolian Red List of Fishes: Regional Red List Series, Zool. Soc. London, 2006, vol. 3, pp. 21–68.
Dgebuadze, Yu.Yu. and Ryabov, I.N., Biology of Altai Osmans, in Geografiya i dinamika zhivotnogo i rastitel’nogo mira MNR (Geography and Dynamics of Animal and Plant World of Mongolian People’s Republic), Moscow: Nauka, 1978, pp. 174–182.
Kafanova, V.V., Materials on the Systematics of Altai Osmans of the Genus Oreoleuciscus Warpachowski, Vopr. Ikhtiol., 1961, vol. 1, pp. 9–18.
Svetovidova, A.A., Revision of Altai Osmans of the Genus Oreoleuciscus Warp. (Pisces, Cyprinidae), Vopr. Ikhtiol., 1965, vol. 5, no. 2, pp. 245–261.
Baasanoyuav, G., Dgebuadze, Yu.Yu., Demin, A.K., et al., Species Review of Ichthyofauna of Mongolian People’s Republic, in Ryby Mongol’skoi Narodnoi Respubliki (Fishes of Mongolian People’s Republic), Moscow: Nauka, 1983, pp. 102–224.
Baasanoyuav, G., Dgebuadze, Yu.Yu., Demin, A.N., et al., Ryby Mongol’skoi Narodnoi Respubliki: Ekologiya i khozyaistvennoe znachenie ryb MNR (Fishes of Mongolian People’s Republic: Ecology and Economic Value), Moscow: Nauka, 1985.
Borisovets, E.E., Dgebuadze, Yu.Yu., and Ermokhin, V.Ya., Morphometric Analysis of Altai Osmans (Oreoleuciscus; Pisces, Cyprinidae) from Mongolian People’s Republic Basins: Multidimentional Approach, Zool. Zh., 1985, vol. 64, no. 8, pp. 1199–1212.
Dgebuadze, Yu.Yu., The Land/Inland-Water Ecotones and Fish Population of Lake Valley (West Mongolia), Hydrobiologia, 1995, vol. 303, pp. 235–245.
Egorov, A.G. and Zhamsaran, M., Dwarf Altai Osman Oreoleuciscus potanini (Kessler) from Ubsu-Nuur Lake, Dokl. Vyssh. Shkoly, Biol. Nauki, 1961, vol. 2, pp. 42–43.
Bogutskaya, K G., Some Traits Variation among Altai Osmans in Relation to Species Diagnostics in the Genus Oreoleuciscus (Cyprinidae), Tr. Zool. Inst., 1990, vol. 222, pp. 110–132.
Vasil’eva, E.D., About the Taxonomic Status of Some Forms of the Genus Oreoleuciscus (Cyprinidae), Vopr. Ikhtiol., 1985, vol. 26, pp. 196–211.
Semina, A.V., Polyakova, N.E., and Brykov, Vl.A., Analysis of Mitochondrial DNA: Taxonomic and Phylogenetic Relationships in Two Fish Taxa (Pisces: Mugilidae, Cyprinidae), Biochemistry (Moscow), 2007, vol. 72, no. 12, pp. 1666–1673.
Imoto, J., Saitoh, K., Adachi, J., et al., Phylogenetic Position of the Altaic Fish, Genus Oreoleuciscus in Leuciscinae Based on Mitogenome Sequences, Modern Achievements in Population, Evolutionary, and Ecological Genetics (Proc. Int. Symp.), Vladivostok, 2009, p. 23.
Kartavtsev, Y.P. and Hanzawa, N., Inferences in Leuciscinae (Pisces, Cyprinidae) Phylogeny and Taxonomy Based on Cytochrome b Sequence Distances and on Enzyme Loci Diversity, Korean J. Genet., 2007, vol. 29, no. 4, pp. 427–435.
Ratnasingham, S. and Hebert, P.D.N., BOLD: The Barcode of Life Data System (www.barcodinglife.org), Mol. Ecol. Notes, 2007, vol. 7, no. 3, pp. 355–364.
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Original Russian Text © N.M. Batishcheva, Yu.Ph. Kartavtsev, N.G. Bogutskaya, 2011, published in Genetika, 2011, Vol. 47, No.10, pp. 1335–1345.
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Batishcheva, N.M., Kartavtsev, Y.P. & Bogutskaya, N.G. Phylogenetic analysis of Altai osmans of the genus Oreoleuciscus (Pisces, Cyprinidae, Leuciscinae), based on the analysis of the cytochrome oxidase 1 gene (Co-1) sequence. Russ J Genet 47, 1188–1197 (2011). https://doi.org/10.1134/S1022795411100036
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DOI: https://doi.org/10.1134/S1022795411100036