Skip to main content
Log in

Phylogenetic analysis of Altai osmans of the genus Oreoleuciscus (Pisces, Cyprinidae, Leuciscinae), based on the analysis of the cytochrome oxidase 1 gene (Co-1) sequence

  • Animal Genetics
  • Published:
Russian Journal of Genetics Aims and scope Submit manuscript

Abstract

Molecular genetic analysis of Altai osmans of the genus Oreoleuciscus from two different parts of the range was carried out. In this study, based on the mitochondrial Co-1 gene sequence, a total of 25 fish specimens belonging to four genera were examined: (1) O. humilis, 2 specimens; O. potanini, 13 specimens; (2) Pseudaspius leptocephalus, 1 specimen; (3) Tribolodon brandtii, T. hakonensis, and T. sachalinensis from the GanBank database, 9 speciens; and (4) Leuciscus waleckii, 1 specimen (used as an outgroup). The p-distances were very low both within and between the species: (1) 0.20 ± 0.03%; (2) 0.40 ± 0.12%; and (1–2) 0.80 ± 0.04%. To visualize the relationships among all of the species examined, the neighbor joining (NJ), maximum parsimony (MP), Bayesian (BA), and maximum likelihood (ML) trees were constructed. The results obtained using these methods were very similar. It was demonstrated that species assignment of the individuals (barcoding) with the help Co-1 gene was effective, despite of very low divergence of the two osman taxa, which was comparable with typical intraspecific values in other animal groups. Taxonomic status of O. potanini and O. humilis requires further investigation with paying attention to low genetic distances between these species along with the lack of material from sympatric parts of the ranges.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  1. Abramson, N.I., Phylogeography: Results, Problems, Perspectives, Vestn. VOGiS, 2007, vol. 11, no. 2, pp. 307–331.

    Google Scholar 

  2. Lukashov, V.V., Molekulyarnaya evolyutsiya i filogeneticheskii analiz (Molecular Evolution and Phylogenetic Analysis), Moscow: BINOM, 2009.

    Google Scholar 

  3. Avise, J.C., Phylogeography: The History and Formation of Species, Cambridge: Harvard Univ. Press, 2001.

    Google Scholar 

  4. Miya, M., Saitoh, K., Wood, R., et al., New Primers for Amplifying and Sequencing the Mitochondrial ND4/ND5 Gene Region of the Cypriniformes (Actinopterygii: Ostariophysi), Ichthyol. Soc. Jap., 2006, vol. 53, pp. 75–81.

    Article  Google Scholar 

  5. Kartavtsev, Yu.Ph. and Li, Zh.-S., Analysis of Nucleotide Diversity at Genes Cyt-b and Co-1 on the Population, Species and Genus Levels, Genetika (Moscow), 2006, vol. 42, no. 4, pp. 341–362.

    CAS  Google Scholar 

  6. Kartavtsev, Y.Ph., Analysis of Sequence Diversity at Two Mitochondrial Genes on Different Taxonomic Levels: Applicability of DNA Based Distance Data in Genetics of Speciation and Phylogenetics, Genetic Diversity, Mahoney C.L. and Springer, D.A., Eds., New York: Nova Sci. Publ., 2009, pp. l–50.

    Google Scholar 

  7. Heber, P.D., Stoeckle, M.Y., Zemlak, T.S., and Francis, C.M., Identification of Birds through DNA Barcodes, PLoS Biol., 2004, vol. 2, p. 312.

  8. Kim, I.-C., Jung, S.-O., Lee, Y.M., et al., The Complete Mitochondrial Genome of the Ray Fish Raja porosa (Chondrichthyes, Rajidae), DNA Seq., 2005, vol. 16, pp. 187–194.

    Article  PubMed  CAS  Google Scholar 

  9. Ward, R.D., Zemlak, T.S., Ihnes, B.H., et al., DNA Barcoding Australia Fish Species, Philos. Trans. R. Soc. London, Ser. B, 2005, vol. 360, pp. 1847–1857.

    Article  PubMed  CAS  Google Scholar 

  10. Kartavtsev, Yu.F., Molekulyarnaya evolyutsiya i populyatsionnaya genetika (Molecular Evolution and Population Genetics), Vladivostok: Izd. Dal’nevostochnogo Univ., 2005.

    Google Scholar 

  11. Johns, G.C. and Avise, J.C., A Comparative Summary of Genetic Distances in the Vertebrates from the Mitochondrial Cytochrome b Gene, Mol. Biol. Evol., 1998, vol. 15, pp. 1481–1490.

    PubMed  CAS  Google Scholar 

  12. Kartavtsev, Y.P., Park, T.-J., Vinnikov, K.A., et al., Cytochrome b (Cyt-b) Gene Sequence Analysis in Six Flatfish Species (Teleostei, Pleuronectidae), with Phylogenetic and Taxonomic Insights, Mar. Biol. (Berlin), 2007, vol. 152, pp. 757–773.

    Article  CAS  Google Scholar 

  13. Kartavtsev, Y.P., Park, T.-J., Lee, J.-S., et al., Phylogenetic Inferences Introduced on Cytochrome b Gene Sequences Data for Six Flatfish Species (Teleostei, Pleuronectidae) and Species Synonymy between Representatives of Genera Pseudopleuronectes and Hippoglossoides from Far Eastern Seas, Russ. J. Genet., 2008, vol. 44, no. 4, pp. 451–458.

    Article  CAS  Google Scholar 

  14. Nei, M. and Kumar, S., Molecular Evolution and Phylogenetics, New York: Oxford Univ. Press, 2000.

    Google Scholar 

  15. Bannikova, A.A., Molecular Markers and the Modern Phylogenetics of Mammals, Zh. Obshch. Biol., 2004, vol. 65, no. 4, pp. 278–305.

    PubMed  CAS  Google Scholar 

  16. Bogutskaya, N.G., Morphological Bases of the System of the Subfamily Leusiscinae, (Cyprinidae), Vopr. Ikhtiol., 1990, vol. 30, no. 6, pp. 920–933.

    Google Scholar 

  17. Kartavtsev, Yu.Ph., Chiba Satoru, N., Takayuki Uematsu, et al., Genetic Divergence and Phylogenetic Independence of Far Eastern Species in Subfamily Leuciscinae (Pisces: Cyprinidae) Inferred from Mitochondrial DNA Analyses, Genes Genet. Syst., 2007, vol. 82, pp. 329–340.

    Article  PubMed  Google Scholar 

  18. Bogutskaya, N.G. and Naseka, A.M., Katalog beschelyustnykh i ryb presnykh i solonovatykh vod Rossii s nomenklaturnymi i taksonomicheskimi kommentariyami (Catalog of Agnatha and Fish of Fresh and Brackish Waters of Russia with Nomenclatural and Taxonomic Commentaries), Moscow: KMK, 2004.

    Google Scholar 

  19. Kartavtsev, Yu.F., Sviridov, V.V., Khanzava, N., and Sazaki, T., Genetic Divergence of Far Eastern Dace Species of the Genus Tribolodon (Pisces: Cyprinidae) and Closely Related Taxa, Russ. J. Genet., 2002, vol. 38, no. 11, pp. 1518–1531.

    Article  Google Scholar 

  20. Manchin, E. and Dgebuadze, Yu.Yu., Alien Fish Species in the Mongolian Part of the Selenga River Basin, Ross. Zh. Biol. Invaziy, 2010, no. 2, pp. 89–96.

  21. Slyn’ko, Yu.V. and Dgebuadze, Yu.Yu., Population Genetic Analysis of Altai Osmans (Oreoleuciscus, Cyprinidae) from Mongolia Basins, Vopr. Ikhtiol., 2009, vol. 49, no. 5, pp. 632–645.

    Google Scholar 

  22. http://sib-fisher.ru/fish/12-karpov/57-osman.html.

  23. Bogutskaya, N.G., A Revision of Altai Osmans of the Genus Oreoleuciscus (Cyprinidae: Leuciscinae) with a Description of a New Species, O. angusticephalus, from River Kobdo (Hovd) System, West Mongolia, New Contributions to Freshwater Fish Research (Proc. Zool. Inst. Russ. Akad. Sci.), St. Petersburg, 2001, vol. 287, pp. 5–44.

    Google Scholar 

  24. Kottelat, M., Fishes of Mongolia: A Check-List of the Fishes Known to Occur in Mongolia with Comments on Systematics and Nomenclature. The World Bank, Washington DC, 2006.

  25. Gundrizer, A.H., Study of Altai Osmans of the Genus Oreoleuciscus Warp., Problemy Ekol., 1976, no. 4, pp. 157–166.

  26. Hulsenbeck, J.P. and Rondquist, F., Mr., BAYES: Bayesian Inference of Phylogenetic Trees, Bioinformatics, 2001, vol. 17, no. 8, pp. 754–755.

    Article  Google Scholar 

  27. Golubtsov, A.S., Berendzen, P.B., and Annet, C.A., Morphological Variation and Taxonomic Status of Altai Osmans, Oreoleuciscus, from the Upper Reaches of the Ob River System, J. Fish. Biol., 1999, vol. 54, pp. 878–899.

    Google Scholar 

  28. Sharina, S.N. and Kartavtsev, Yu.F., Flatfish (Teleostei, Pleuronectiformes) Phylogenetic Analysis Based on the Study of Nucleotide Sequences of the Cytochromoxidase 1 Gene (Co-1), Russ. J. Genet., 2010, vol. 46, no. 3, pp. 401–406.

    Article  CAS  Google Scholar 

  29. Gafurov, Yu.M., Dezoksiribonukleazy: Metody issledovaniya i svoistva (Deoxiribonucleases: Methods of Study and Properties), Vladivostok: Dal’nauka, 1999.

    Google Scholar 

  30. Sambrook, J., Fritsch, E.F., and Maniatis, T., Molecular Cloning: A Laboratory Manual, Cold Spring Harbor: Cold Spring Harbor Lab., 1989.

    Google Scholar 

  31. http://www.technelysium.com.au/chromas.html.

  32. http://www.ncbi.nlm.nih.gov/.

  33. Thompson, J.D., Higgins, D.G., and Gibson, T.J., Clustal W: Improving the Sensitivity of Progressive Multiple Sequence Alignment through Sequence Weighting, Position, Specific Gap Penalties, and Weight Matrix Choice, Nucleic Acids Res., 1994, vol. 22, pp. 4673–4680.

    Article  PubMed  CAS  Google Scholar 

  34. Kumar, S., Tamura, K., and Nei, M., MEGA3: Integrated Software for Molecular Evolutionary Genetics Analysis and Sequence Alignment, Briefings Bioinform., 2004, vol. 5, no. 2, pp. 150–163.

    Article  CAS  Google Scholar 

  35. Hall, B., Phylogenetic Trees Made Easy: A How-To Manual for Molecular Biologists, Sunderland: Sinauer Associates, 2001.

    Google Scholar 

  36. Posada, D. and Grandal, K.A., MODELTEST: Testing the Model DNA Substitution, Bioinformatics, 1998, vol. 14, pp. 817–818.

    Article  PubMed  CAS  Google Scholar 

  37. Swofford, D.L., PAUP* Phylogenetic Analysis Using Parsinomy (and Other Methods): Beta Version 10, Sunderland: Sinauer Associates, 2002.

    Google Scholar 

  38. Page, R.D.M., TREEVIEW: An Application to Display Phylogenetic Trees on Personal Computers, Cabios Appl. Note, 1996, vol. 12, no. 4, pp. 357–358.

    CAS  Google Scholar 

  39. STATISTICA for Windows (Data Analysis Software System), Version 7.1, Tulsa: StatSoft, 2006.

  40. He, Sh., Richard, L. Mayden, Xuzheng Wang, et al., Molecular Phylogenetics of the Family Cyprinidae (Actinopterygii: Cypriniformes) as Evidenced by Sequence Variation in the First Intron of S7 Ribosomal Protein-Coding Gene: Further Evidence from a Nuclear Gene of the Systematic Chaos in the Family, Mol. Phylogenet. Evol., 2008, vol. 46, pp. 818–829.

    Article  PubMed  CAS  Google Scholar 

  41. Sasaki, T., Kartavtsev Yu.P., Chiba Satoru, N., et al., Genetic Divergence and Phylogenetic Independence of Far Eastern Species in Subfamily Leuciscinae (Pisces: Cyprinidae) Inferred from Mitochondrial DNA Analyses, Genes Genet. Syst., 2007, vol. 82, no. 4, pp. 329–340.

    Article  PubMed  CAS  Google Scholar 

  42. Varpakhovskii, N.A., Monografiya novogo roda karpovykh ryb (Oreoleuciscus) (Monograph of the New Cyprinid Fish Genus (Oreoleuciscus)), St. Petersburg: Izd. Imperatorskoy Akad. Nauk, 1889.

    Google Scholar 

  43. Berg, L.S., Fauna Rossii i sopredel’nykh stran: Ryby (Marsipobranchii i Pisces) (Fauna of Russia and Adjacent Countries: Fishes (Marsipobranchii and Pisces)), St. Petersburg: Izd. Imperatorskoy Akad. Nauk, 1912, vol. 3, no. 1.

    Google Scholar 

  44. Berg, L.S., Ryby presnykh vod SSSR i sopredel’nykh stran (Freshwater Fishes of the Soviet Union and Adjacent Countries), Moscow: Izd. Akad. Nauk SSSR, 1949, part 2, 4th ed.

    Google Scholar 

  45. Dashdorzh, A., Dulmaa, A., and Pivinicka, K., Contribution to the Systematics of the Genus Oreoleuciscus Warpachowski, 1889 (Cyprinidae), Vestn. Cheskoslov. Spol. Zool., 1969, vol. 33, no. 4, pp. 289–299.

    Google Scholar 

  46. Ocock, J., Bassanjav, J.J., Baillie, E.M., et al., Mongolian Red List of Fishes: Regional Red List Series, Zool. Soc. London, 2006, vol. 3, pp. 21–68.

    Google Scholar 

  47. Dgebuadze, Yu.Yu. and Ryabov, I.N., Biology of Altai Osmans, in Geografiya i dinamika zhivotnogo i rastitel’nogo mira MNR (Geography and Dynamics of Animal and Plant World of Mongolian People’s Republic), Moscow: Nauka, 1978, pp. 174–182.

    Google Scholar 

  48. Kafanova, V.V., Materials on the Systematics of Altai Osmans of the Genus Oreoleuciscus Warpachowski, Vopr. Ikhtiol., 1961, vol. 1, pp. 9–18.

    Google Scholar 

  49. Svetovidova, A.A., Revision of Altai Osmans of the Genus Oreoleuciscus Warp. (Pisces, Cyprinidae), Vopr. Ikhtiol., 1965, vol. 5, no. 2, pp. 245–261.

    Google Scholar 

  50. Baasanoyuav, G., Dgebuadze, Yu.Yu., Demin, A.K., et al., Species Review of Ichthyofauna of Mongolian People’s Republic, in Ryby Mongol’skoi Narodnoi Respubliki (Fishes of Mongolian People’s Republic), Moscow: Nauka, 1983, pp. 102–224.

    Google Scholar 

  51. Baasanoyuav, G., Dgebuadze, Yu.Yu., Demin, A.N., et al., Ryby Mongol’skoi Narodnoi Respubliki: Ekologiya i khozyaistvennoe znachenie ryb MNR (Fishes of Mongolian People’s Republic: Ecology and Economic Value), Moscow: Nauka, 1985.

    Google Scholar 

  52. Borisovets, E.E., Dgebuadze, Yu.Yu., and Ermokhin, V.Ya., Morphometric Analysis of Altai Osmans (Oreoleuciscus; Pisces, Cyprinidae) from Mongolian People’s Republic Basins: Multidimentional Approach, Zool. Zh., 1985, vol. 64, no. 8, pp. 1199–1212.

    Google Scholar 

  53. Dgebuadze, Yu.Yu., The Land/Inland-Water Ecotones and Fish Population of Lake Valley (West Mongolia), Hydrobiologia, 1995, vol. 303, pp. 235–245.

    Article  Google Scholar 

  54. Egorov, A.G. and Zhamsaran, M., Dwarf Altai Osman Oreoleuciscus potanini (Kessler) from Ubsu-Nuur Lake, Dokl. Vyssh. Shkoly, Biol. Nauki, 1961, vol. 2, pp. 42–43.

    Google Scholar 

  55. Bogutskaya, K G., Some Traits Variation among Altai Osmans in Relation to Species Diagnostics in the Genus Oreoleuciscus (Cyprinidae), Tr. Zool. Inst., 1990, vol. 222, pp. 110–132.

    Google Scholar 

  56. Vasil’eva, E.D., About the Taxonomic Status of Some Forms of the Genus Oreoleuciscus (Cyprinidae), Vopr. Ikhtiol., 1985, vol. 26, pp. 196–211.

    Google Scholar 

  57. Semina, A.V., Polyakova, N.E., and Brykov, Vl.A., Analysis of Mitochondrial DNA: Taxonomic and Phylogenetic Relationships in Two Fish Taxa (Pisces: Mugilidae, Cyprinidae), Biochemistry (Moscow), 2007, vol. 72, no. 12, pp. 1666–1673.

    Article  Google Scholar 

  58. Imoto, J., Saitoh, K., Adachi, J., et al., Phylogenetic Position of the Altaic Fish, Genus Oreoleuciscus in Leuciscinae Based on Mitogenome Sequences, Modern Achievements in Population, Evolutionary, and Ecological Genetics (Proc. Int. Symp.), Vladivostok, 2009, p. 23.

  59. Kartavtsev, Y.P. and Hanzawa, N., Inferences in Leuciscinae (Pisces, Cyprinidae) Phylogeny and Taxonomy Based on Cytochrome b Sequence Distances and on Enzyme Loci Diversity, Korean J. Genet., 2007, vol. 29, no. 4, pp. 427–435.

    CAS  Google Scholar 

  60. Ratnasingham, S. and Hebert, P.D.N., BOLD: The Barcode of Life Data System (www.barcodinglife.org), Mol. Ecol. Notes, 2007, vol. 7, no. 3, pp. 355–364.

    Article  PubMed  CAS  Google Scholar 

Download references

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Yu. Ph. Kartavtsev.

Additional information

Original Russian Text © N.M. Batishcheva, Yu.Ph. Kartavtsev, N.G. Bogutskaya, 2011, published in Genetika, 2011, Vol. 47, No.10, pp. 1335–1345.

Rights and permissions

Reprints and permissions

About this article

Cite this article

Batishcheva, N.M., Kartavtsev, Y.P. & Bogutskaya, N.G. Phylogenetic analysis of Altai osmans of the genus Oreoleuciscus (Pisces, Cyprinidae, Leuciscinae), based on the analysis of the cytochrome oxidase 1 gene (Co-1) sequence. Russ J Genet 47, 1188–1197 (2011). https://doi.org/10.1134/S1022795411100036

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1134/S1022795411100036

Keywords

Navigation