Abstract
We describe the preparation and properties of lipodisc nanoparticles–lipid membrane fragments with a diameter of about 10 nm, stabilized by amphiphilic synthetic polymer molecules. We used the lipodisc nanoparticles made of Escherichia coli polar lipids and compared lipodisc nanoparticles that contained the photosensitive protein complex of the sensory rhodopsin with its cognate transducer from the halobacterium Natronomonas pharaonis with empty lipodisc nanoparticles that contained no protein. The lipodisc nanoparticles were characterized by dynamic light scattering, transmission electron microscopy and atomic force microscopy. We found that the diameter of lipodisc nanoparticles was not affected by incorporation of the protein complexes, which makes them a prospective platform for single-molecule studies of membrane proteins.
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References
M. M. Waldrop, Nature 505, 604 (2014).
J. Hajdu, Curr. Opin. Struct. Biol. 10, 569 (2000).
H. N. Chapman, P. Fromme, A. Barty, et al., Nature 470, 73 (2011).
K. V. Shaitan, M. P. Kirpichnikov, V. S. Lamsin, et al., Vastn. RFFI 4, 38 (2014).
A. Deniaud, E. Moiseeva, V. Gordeliy, et al., in Membrane Protein Structure Determination, Ed. by J.-J. Lacapere (Humana Press, 2010), pp. 79–103.
V. Cherezov, Curr. Opin. Struct. Biol. 21, 559 (2011).
U. Weierstall, J. C. Spence, and R. B. Doak, Rev. Sci. Instrum. 83, 035108 (2012).
R. Fung, V. Shneerson, D. K. Saldin, et al., Nat. Phys. 5, 64 (2009).
A. Barty, J. Kupper, and H. N. Chapman, Annu. Rev. Phys. Chem. 64, 415 (2013).
K. V. Shaitan, G. A. Armeev and A. K. Shaitan, Biophysics (Moscow) 61 (2), 177 (2016).
J. A. Whiles, R. Deems, R. R. Vold, et al., Bioorg. Chem. 30, 431 (2002).
M. Jamshad, Y. P. Lin, T. J. Knowles, et al., Biochem. Soc. Trans. 39, 813 (2011).
J. Borch and T. Hamann, Biol. Chem. 390, 805 (2009).
T. H. Bayburt and S. G. Sligar, FEBS Lett. 584, 1721 (2010).
M. C. Orwick, P. J. Judge, J. Procek, et al., Angew. Chem. Int. Ed. 51, 4653 (2012).
R. F. Zhang, I. D. Sahu, L. S. Liu, et al., Biochim. Biophys. Acta–Biomembranes 1848, 329 (2015).
D. Li, J. Li, Y. L. Zhuang, et al., Protein Cell 6, 229 (2015).
M. Orwick-Rydmark, J. E. Lovett, A. Graziadei, et al., Nano Lett. 12, 4687 (2012).
D. Yu, Honors Scholar Theses 316 (2013).
A. R. Long, C. C. O’Brien, K. Malhotra, et al., BMC Biotechnol. 13 (2013).
J. M. Dorr, M. C. Koorengevel, M. Schafer, et al., Proc. Natl. Acad. Sci. U. S. A. 111, 18607 (2014).
T. J. Knowles, R. Finka, C. Smith, et al., J. Am. Chem. Soc. 131, 7484 (2009).
M. Jamshad, V. Grimard, I. Idini, et al., Nano Res. 8, 774 (2015).
E. N. Lyukmanova, Z. O. Shenkarev, A. S. Paramonov, et al., J. Am. Chem. Soc. 130, 2140 (2008).
Z. O. Shenkarev, E. N. Lyukmanova, A. S. Paramonov, et al., J. Am. Chem. Soc. 132, 5628 (2010).
A. Z. Kijac, Y. Li, S. G. Sligar, et al., Biochemistry 46, 13696 (2007).
E. P. Gogol, N. Akkaladevi, L. Szerszen, et al., Prot. Sci. 22, 586 (2013).
I. Orban-Glass, N. Voskoboynikova, K. B. Busch, et al., Biochemistry 54, 349 (2015).
A. Royant, P. Nollert, K. Edman, et al., Proc. Natl. Acad. Sci. U. S. A. 98, 10131 (2001).
H. Luecke, B. Schobert, J. K. Lanyi, et al., Science 293, 1499 (2001).
V. I. Gordeliy, J. Labahn, R. Moukhametzianov, et al., Nature 419, 484 (2002).
J. P. Klare, I. Chizhov, and M. Engelhard, Results Probl. Cell Differ. 45, 73 (2008).
A. A. Wegener, I. Chizhov, M. Engelhard, et al., J. Mol. Biol. 301, 881 (2000).
V. D. Trivedi and J. L. Spudich, Biochemistry 42, 13887 (2003).
I. P. Hohenfeld, A. A. Wegener, and M. Engelhard, FEBS Lett. 442, 198 (1999).
N. Mennes, J. P. Klare, I. Chizhov, et al., FEBS Lett. 581, 1487 (2007).
K. Shimono, M. Iwamoto, M. Sumi, et al., FEBS Lett. 420, 54 (1997).
C. A. Schneider, W. S. Rasband, and K. W. Eliceiri, Nat. Methods 9, 671 (2012).
J. Kriegsmann, M. Brehs, J. P. Klare, et al., Biochim. Biophys. Acta 1788, 522 (2009).
C. D. Blanchette, J. A. Cappuccio, E. A. Kuhn, et al., Biochim. Biophys. Acta–Biomembranes 1788, 724 (2009).
T. H. Bayburt, J. W. Carlson, and S. G. Sligar, Langmuir 16, 5993 (2000).
T. H. Bayburt and S. G. Sligar, Proc. Natl. Acad. Sci. USA. 99, 6725 (2002).
H. G. Yuk and D. L. Marshall, Appl. Environ. Microbiol. 69, 5115 (2003).
B. A. Lewis and D. M. Engelman, J. Mol. Biol. 166, 211 (1983).
S. Marchesini, H. He, H. N. Chapman, et al., Phys. Rev. B 68 (2003).
S. Gulati, M. Jamshad, T. J. Knowles, et al., Biochem. J. 461, 269 (2014).
V. Postis, S. Rawson, J. K. Mitchell, et al., Biochim. Biophys. Acta–Biomembranes. 1848, 496 (2015).
T. H. Bayburt and S. G. Sligar, Prot. Sci. 12, 2476 (2003).
B. A. Chromy, E. Arroyo, C. D. Blanchette, et al., J. Am. Chem. Soc. 129, 14348 (2007).
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Original Russian Text © D.V. Bagrov, N. Voskoboynikova, G.A. Armeev, W. Mosslehy, G.S. Gluhov, T.T. Ismagulova, A.Y. Mulkidjanian, M.P. Kirpichnikov, H.-J. Steinhoff, K.V. Shaitan, 2016, published in Biofizika, 2016, Vol. 61, No. 6, pp. 1139–1148.
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Bagrov, D.V., Voskoboynikova, N., Armeev, G.A. et al. Characterization of lipodisc nanoparticles containing sensory rhodopsin II and its cognate transducer from Natronomonas pharaonis . BIOPHYSICS 61, 942–949 (2016). https://doi.org/10.1134/S0006350916060063
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DOI: https://doi.org/10.1134/S0006350916060063