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Intermediate states of apomyoglobin: Are they parts of the same area of conformations diagram?

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Abstract

Several research teams have reported detection and characterization of various apomyoglobin intermediate states different in their accumulation mode, thus putting a natural question as to proportions of these intermediates. The current report presents spectral properties of sperm whale apomyoglobin studied over a wide range of conditions with the use of circular dichroism and fluorescence techniques. Based on the experimental data, a diagram of apomyoglobin conformational states has been constructed. It shows that though induced by various denaturants, all the observed intermediates belong to one and the same area in the diagram.

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Abbreviations

ApoMb:

apomyoglobin

CD:

circular dichroism

DSC:

differential scanning calorimetry

I:

protein intermediate state

N:

protein native state

U:

protein unfolded state

References

  1. Sarkar, S. S., Udgaonkar, J. B., and Krishnamoorthy, G. (2013) Unfolding of a small protein proceeds via dry and wet globules and a solvated transition state, Biophys. J., 105, 2392–2402.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  2. Bonetti, D., Camilloni, C., Visconti, L., Longhi, S., Brunori, M., Vendruscolo, M., and Gianni, S. (2016) Identification and structural characterization of an intermediate in the folding of the measles virus X domain, J. Biol. Chem., 291, 10886–10892.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  3. Ptitsyn, O. B. (1995) Molten globule and protein folding, Adv. Protein Chem., 47, 83–229.

    Article  CAS  PubMed  Google Scholar 

  4. Barrick, D., and Baldwin, R. L. (1993) The molten globule intermediate of apomyoglobin and the process of protein folding, Protein Sci., 2, 869–876.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  5. Kay, M. S., and Baldwin, R. L. (1996) Packing interactions in the apomyoglobin folding intermediate, Nature Struct. Biol., 3, 439–445.

    Article  CAS  PubMed  Google Scholar 

  6. Kay, M. S., and Baldwin, R. L. (1998) Alternative models for describing the acid unfolding of the apomyoglobin folding intermediate, Biochemistry, 37, 7859–7868.

    Article  CAS  PubMed  Google Scholar 

  7. Eliezer, D., Yao, J., Dyson, H. J., and Wright, P. E. (1998) Structural and dynamic characterization of partially folded states of apomyoglobin and implications for protein folding, Nature Struct. Biol., 5, 148–155.

    Article  CAS  PubMed  Google Scholar 

  8. Bertagna, A. M., and Barrick, D. (2004) Nonspecific hydrophobic interactions stabilize an equilibrium intermediate of apomyoglobin at a key position within the AGH region, Proc. Natl. Acad. Sci. USA, 101, 12514–12519.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  9. Nishiguchi, S., Goto, Y., and Takahashi, S. (2007) Solvation and desolvation dynamics in apomyoglobin folding monitored by timeresolved infrared spectroscopy, J. Mol. Biol., 373, 491–502.

    Article  CAS  PubMed  Google Scholar 

  10. Samatova, E. N., Katina, N. S., Balobanov, V. A., Melnik, B. S., Dolgikh, D. A., Bychkova, V. E., and Finkelstein, A. V. (2009) How strong are side chain interactions in the folding intermediate? Protein Sci., 18, 2152–2159.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  11. Griko, Y. V., Privalov, P. L., Veniaminov, V. P., and Kutyshenko, V. P. (1988) Thermodynamic study of the apomyoglobin structure, J. Mol. Biol., 202, 27–35.

    Article  Google Scholar 

  12. Singh, N., Kumar, R., Jagannadham, M. V., and Kayastha, A. M. (2013) Evidence for a molten globule state in Cicer α-galactosidase induced by pH, temperature, and guanidine hydrochloride, Appl. Biochem. Biotechnol., 169, 2315–2325.

    Article  CAS  PubMed  Google Scholar 

  13. Tanford, C. (1968) Protein denaturation, Adv. Protein Chem., 23, 121–282.

    Article  CAS  PubMed  Google Scholar 

  14. Goto, Y., and Fink, A. L. (1990) Phase diagram for acidic conformational states of apomyoglobin, J. Mol. Biol., 20, 803–805.

    Article  Google Scholar 

  15. Kamatari, Y. O., Ohji, S., Konno, T., Seki, Y., Soda, K., Kataoka, M., and Akasaka, K. (1999) The compact and expanded denatured conformations of apomyoglobin in the methanol–water solvent, Protein Sci., 8, 873–882.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  16. Bychkova, V. E., Dujsekina, A. E., Klenin, S. I., Tiktopulo, E. I., Uversky, V. N., and Ptitsyn, O. B. (1996) Molten globulelike state of cytochrome c under conditions simulating those near the membrane surface, Biochemistry, 35, 6058–6063.

    Article  CAS  PubMed  Google Scholar 

  17. Cocco, M. J., and Lecomte, J. T. (1996) The native state of apomyoglobin described by proton NMR spectroscopy: the A-B-G-H interface of wildtype sperm whale apomyoglobin, Proteins, 25, 267–285.

    Article  PubMed  Google Scholar 

  18. Eliezer, D., and Wright, P. E. (1996) Is apomyoglobin a molten globule? Structural characterization by NMR, J. Mol. Biol., 263, 531–538.

    Article  CAS  PubMed  Google Scholar 

  19. Griko, Y. V., and Privalov, P. L. (1994) Thermodynamic puzzle of apomyoglobin unfolding, J. Mol. Biol., 235, 1318–1325.

    Article  CAS  PubMed  Google Scholar 

  20. Harrison, S. C., and Blout, E. R. (1965) Reversible conformational changes of myoglobin and apomyoglobin, J. Biol. Chem., 61, 623–627.

    Google Scholar 

  21. Yao, J., Chung, J., Eliezer, D., Wright, P. E., and Dyson, H. J. (2001) NMR structural and dynamic characterization of the acidunfolded state of apomyoglobin provides insights into the early events in protein folding, Biochemistry, 27, 3561–3571.

    Article  Google Scholar 

  22. Mohana-Borges, R., Goto, N. K., Kroon, G. J., Dyson, H. J., and Wright, P. E. (2004) Structural characterization of unfolded states of apomyoglobin using residual dipolar couplings, J. Mol. Biol., 340, 1131–1142.

    Article  CAS  PubMed  Google Scholar 

  23. Schwarzinger, S., Wright, P. E., and Dyson, H. J. (2002) Molecular hinges in protein folding: the ureadenatured state of apomyoglobin, Biochemistry, 41, 12681–12686.

    Article  CAS  PubMed  Google Scholar 

  24. Jennings, P. A., Stone, M. J., and Wright, P. E. (1995) Overexpression of myoglobin and assignment of the amid, Cα and Cβ resonances, J. Biomol. NMR, 6, 271–276.

    Article  CAS  PubMed  Google Scholar 

  25. Tischer, A., and Auton, M. (2013) Urea–temperature phase diagrams capture the thermodynamics of denatured state expansion that accompany protein unfolding, Protein Sci., 22, 1147–1160.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  26. Serrano, A. L., Waegele, M. M., and Gai, F. (2012) Spectroscopic studies of protein folding: linear and nonlinear methods, Protein Sci., 21, 157–170.

    Article  CAS  PubMed  Google Scholar 

  27. Baryshnikova, E. N., Melnik, B. S., Finkelstein, A. V., Semisotnov, G. V., and Bychkova, V. E. (2005) Threestate protein folding: experimental determination of freeenergy profile, Protein Sci., 14, 2658–2667.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

  28. Uzawa, T., Nishimura, C., Akiyama, S., Ishimori, K., Takahashi, S., Dyson, H. J., and Wright, P. E. (2008) Hierarchical folding mechanism of apomyoglobin revealed by ultrafast H/D exchange coupled with 2D NMR, Proc. Natl. Acad. Sci. USA, 105, 13859–13864.

    Article  CAS  PubMed  PubMed Central  Google Scholar 

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Correspondence to V. A. Balobanov.

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Published in Russian in Biokhimiya, 2017, Vol. 82, No. 5, pp. 832-840.

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Balobanov, V.A., Katina, N.S., Finkelstein, A.V. et al. Intermediate states of apomyoglobin: Are they parts of the same area of conformations diagram?. Biochemistry Moscow 82, 625–631 (2017). https://doi.org/10.1134/S0006297917050108

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  • DOI: https://doi.org/10.1134/S0006297917050108

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