Influence of Polymer-Pore Interactions on Translocation

Kaifu Luo, Tapio Ala-Nissila, See-Chen Ying, and Aniket Bhattacharya
Phys. Rev. Lett. 99, 148102 – Published 1 October 2007

Abstract

We investigate the influence of polymer-pore interactions on the translocation dynamics using Langevin dynamics simulations. An attractive interaction can greatly improve the translocation probability. At the same time, it also increases the translocation time slowly for a weak attraction while an exponential dependence is observed for a strong attraction. For fixed driving force and chain length the histogram of translocation time has a transition from Gaussian distribution to long-tailed distribution with increasing attraction. Under a weak driving force and a strong attractive force, both the translocation time and the residence time in the pore show a nonmonotonic behavior as a function of the chain length. Our simulations results are in good agreement with recent experimental data.

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  • Received 17 May 2007

DOI:https://doi.org/10.1103/PhysRevLett.99.148102

©2007 American Physical Society

Authors & Affiliations

Kaifu Luo1,*, Tapio Ala-Nissila1,2, See-Chen Ying2, and Aniket Bhattacharya3

  • 1Laboratory of Physics, Helsinki University of Technology, P.O. Box 1100, FIN-02015 TKK, Espoo, Finland
  • 2Department of Physics, Box 1843, Brown University, Providence, Rhode Island 02912-1843, USA
  • 3Department of Physics, University of Central Florida, Orlando, Florida 32816-2385, USA

  • *Author to whom all correspondence should be addressed. luokaifu@yahoo.com

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Issue

Vol. 99, Iss. 14 — 5 October 2007

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