Theory of a Systematic Computational Error in Free Energy Differences

Daniel M. Zuckerman and Thomas B. Woolf
Phys. Rev. Lett. 89, 180602 – Published 15 October 2002

Abstract

Systematic inaccuracy is inherent in any computational estimate of a nonlinear average, due to the availability of only a finite number of data values, N. Free energy differences ΔF between two states or systems are critically important examples of such averages. Previous work has demonstrated, empirically, that the “finite-sampling error” can be very large—many times kBT—in ΔF estimates for simple molecular systems. Here we present a theoretical description of the inaccuracy, including the exact solution of a sample problem, the precise asymptotic behavior in terms of 1/N for large N, the identification of a universal law, and numerical illustrations. The theory relies on corrections to the central and other limit theorems.

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  • Received 12 March 2002

DOI:https://doi.org/10.1103/PhysRevLett.89.180602

©2002 American Physical Society

Authors & Affiliations

Daniel M. Zuckerman1,* and Thomas B. Woolf2,†

  • 1Department of Physiology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205
  • 2Department of Physiology and Department of Biophysics, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205

  • *Email address: dzuckerman@ceoh.pitt.edu Present address: Center for Computational Biology and Bioinformatics, University of Pittsburgh, Pittsburgh, PA 15213.
  • Email address: woolf@groucho.med.jhmi.edu

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Issue

Vol. 89, Iss. 18 — 28 October 2002

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