Collapse transition of a hydrophobic self-avoiding random walk in a coarse-grained model solvent

Mathieu Gaudreault and Jorge Viñals
Phys. Rev. E 80, 021916 – Published 17 August 2009

Abstract

In order to study solvation effects on protein folding, we analyze the collapse transition of a self-avoiding random walk composed of hydrophobic segments that is embedded in a lattice model of a solvent. As expected, hydrophobic interactions lead to an attractive potential of mean force among chain segments. As a consequence, the random walk in solvent undergoes a collapse transition at a higher temperature than in its absence. Chain collapse is accompanied by the formation of a region depleted of solvent around the chain. In our simulation, the depleted region at collapse is as large as our computational domain.

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  • Received 11 May 2009

DOI:https://doi.org/10.1103/PhysRevE.80.021916

©2009 American Physical Society

Authors & Affiliations

Mathieu Gaudreault and Jorge Viñals

  • Department of Physics, McGill University, Montreal, Quebec, Canada H3A 2T8

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Issue

Vol. 80, Iss. 2 — August 2009

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